mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-27 07:30:33 +08:00
Fix szip handling
This commit is contained in:
parent
e667afad36
commit
f897b458ea
2
.github/workflows/run_tests_osx.yml
vendored
2
.github/workflows/run_tests_osx.yml
vendored
@ -7,7 +7,7 @@
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name: Run macOS-based netCDF Tests
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on: [pull_request]
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on: [pull_request,push]
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jobs:
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2
.github/workflows/run_tests_ubuntu.yml
vendored
2
.github/workflows/run_tests_ubuntu.yml
vendored
@ -4,7 +4,7 @@
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name: Run Ubuntu/Linux netCDF Tests
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on: [pull_request]
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on: [pull_request,push]
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jobs:
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2
.github/workflows/run_tests_win_mingw.yml
vendored
2
.github/workflows/run_tests_win_mingw.yml
vendored
@ -7,7 +7,7 @@
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name: Run MSYS2, MinGW64-based Tests
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on: [pull_request]
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on: [pull_request,push]
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jobs:
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@ -623,26 +623,6 @@ ENDIF(ENABLE_STRICT_NULL_BYTE_HEADER_PADDING)
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# 3. is nczarr enabled?
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# We need separate flags for cases 1 and 2
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# We need to determine if libsz is available both for HDF5 and NCZarr
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# If user has specified the `SZIP_LIBRARY`, use it; otherwise try to find...
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IF(NOT SZIP_LIBRARY)
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FIND_LIBRARY(SZIP PATH NAMES szip sz sz2)
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IF(SZIP)
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SET(SZIP_LIBRARY ${SZIP})
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ELSE()
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UNSET(SZIP_LIBRARY)
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UNSET(SZIP)
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ENDIF()
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ENDIF()
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IF(SZIP_LIBRARY)
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SET(SZIP_FOUND yes)
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SET(HAVE_SZ yes)
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ELSE()
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SET(SZIP_FOUND no)
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SET(HAVE_SZ no)
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ENDIF()
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##
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# Option to Enable HDF5
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#
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@ -905,15 +885,6 @@ IF(USE_HDF5)
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int x = 1;}" USE_HDF5_SZIP)
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IF(USE_HDF5_SZIP)
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SET(HAVE_H5Z_SZIP yes)
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# If user has specified the `SZIP_LIBRARY`, use it; otherwise try to find...
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IF(SZIP_FOUND)
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SET(CMAKE_REQUIRED_LIBRARIES ${SZIP_LIBRARY} ${CMAKE_REQUIRED_LIBRARIES})
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MESSAGE(STATUS "HDF5 has szip.")
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ELSE()
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MESSAGE(FATAL_ERROR "HDF5 Requires SZIP, but cannot find libszip or libsz.")
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ENDIF()
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ELSE()
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SET(HAVE_H5Z_SZIP no)
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ENDIF()
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####
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@ -1124,13 +1095,15 @@ ENDIF()
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endmacro(set_std_filter)
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# Locate some compressors
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FIND_PACKAGE(Szip)
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FIND_PACKAGE(Bz2)
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FIND_PACKAGE(Blosc)
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FIND_PACKAGE(Zstd)
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# Accumulate standard filters
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set(STD_FILTERS "deflate") # Always have deflate*/
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set_std_filter(SZIP)
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set_std_filter(Szip)
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SET(HAVE_SZ ${Szip_FOUND})
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set_std_filter(Blosc)
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set_std_filter(Zstd)
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IF(Bz2_FOUND)
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@ -1143,6 +1116,7 @@ ELSE()
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set(STD_FILTERS "${STD_FILTERS} bz2")
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ENDIF()
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# If user wants, then install selected plugins
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SET(PLUGIN_INSTALL_DIR "" CACHE STRING "Whether and where we should install plugins")
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SET(ENABLE_PLUGIN_INSTALL OFF)
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@ -1,179 +0,0 @@
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# - Find SZIP library
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# - Derived from the FindTiff.cmake that is included with cmake
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# Find the native SZIP includes and library
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# This module defines
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# SZIP_INCLUDE_DIRS, where to find tiff.h, etc.
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# SZIP_LIBRARIES, libraries to link against to use SZIP.
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# SZIP_FOUND, If false, do not try to use SZIP.
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# also defined, but not for general use are
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# SZIP_LIBRARY, where to find the SZIP library.
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# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
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# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
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# MESSAGE (STATUS "Finding SZIP library and headers..." )
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############################################
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#
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# Check the existence of the libraries.
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#
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############################################
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# This macro was taken directly from the FindQt4.cmake file that is included
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# with the CMake distribution. This is NOT my work. All work was done by the
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# original authors of the FindQt4.cmake file. Only minor modifications were
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# made to remove references to Qt and make this file more generally applicable
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#########################################################################
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MACRO (SZIP_ADJUST_LIB_VARS basename)
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IF (${basename}_INCLUDE_DIR)
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# if only the release version was found, set the debug variable also to the release version
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IF (${basename}_LIBRARY_RELEASE AND NOT ${basename}_LIBRARY_DEBUG)
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SET (${basename}_LIBRARY_DEBUG ${${basename}_LIBRARY_RELEASE})
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SET (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE})
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SET (${basename}_LIBRARIES ${${basename}_LIBRARY_RELEASE})
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ENDIF (${basename}_LIBRARY_RELEASE AND NOT ${basename}_LIBRARY_DEBUG)
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# if only the debug version was found, set the release variable also to the debug version
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IF (${basename}_LIBRARY_DEBUG AND NOT ${basename}_LIBRARY_RELEASE)
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SET (${basename}_LIBRARY_RELEASE ${${basename}_LIBRARY_DEBUG})
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SET (${basename}_LIBRARY ${${basename}_LIBRARY_DEBUG})
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SET (${basename}_LIBRARIES ${${basename}_LIBRARY_DEBUG})
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ENDIF (${basename}_LIBRARY_DEBUG AND NOT ${basename}_LIBRARY_RELEASE)
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IF (${basename}_LIBRARY_DEBUG AND ${basename}_LIBRARY_RELEASE)
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# if the generator supports configuration types then set
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# optimized and debug libraries, or if the CMAKE_BUILD_TYPE has a value
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IF (CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE)
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SET (${basename}_LIBRARY optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
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ELSE(CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE)
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# if there are no configuration types and CMAKE_BUILD_TYPE has no value
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# then just use the release libraries
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SET (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE} )
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ENDIF (CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE)
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SET (${basename}_LIBRARIES optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
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ENDIF (${basename}_LIBRARY_DEBUG AND ${basename}_LIBRARY_RELEASE)
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SET (${basename}_LIBRARY ${${basename}_LIBRARY} CACHE FILEPATH "The ${basename} library")
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IF (${basename}_LIBRARY)
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SET (${basename}_FOUND 1)
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ENDIF (${basename}_LIBRARY)
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ENDIF (${basename}_INCLUDE_DIR )
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# Make variables changeble to the advanced user
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MARK_AS_ADVANCED (${basename}_LIBRARY ${basename}_LIBRARY_RELEASE ${basename}_LIBRARY_DEBUG ${basename}_INCLUDE_DIR )
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ENDMACRO (SZIP_ADJUST_LIB_VARS)
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# Look for the header file.
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SET (SZIP_INCLUDE_SEARCH_DIRS
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$ENV{SZIP_INSTALL}/include
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$ENV{SZIP_INSTALL}/include/szip
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/usr/include
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/usr/include/szip
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)
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SET (SZIP_LIB_SEARCH_DIRS
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$ENV{SZIP_INSTALL}/lib
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/usr/lib
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)
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SET (SZIP_BIN_SEARCH_DIRS
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$ENV{SZIP_INSTALL}/bin
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/usr/bin
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)
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FIND_PATH (SZIP_INCLUDE_DIR
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NAMES szlib.h
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PATHS ${SZIP_INCLUDE_SEARCH_DIRS}
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NO_DEFAULT_PATH
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)
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IF (WIN32 AND NOT MINGW)
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SET (SZIP_SEARCH_DEBUG_NAMES "sz_d;libsz_d")
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SET (SZIP_SEARCH_RELEASE_NAMES "sz;libsz;szip")
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ELSE (WIN32 AND NOT MINGW)
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SET (SZIP_SEARCH_DEBUG_NAMES "sz_d")
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SET (SZIP_SEARCH_RELEASE_NAMES "sz")
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ENDIF (WIN32 AND NOT MINGW)
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# Look for the library.
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FIND_LIBRARY (SZIP_LIBRARY_DEBUG
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NAMES ${SZIP_SEARCH_DEBUG_NAMES}
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PATHS ${SZIP_LIB_SEARCH_DIRS}
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NO_DEFAULT_PATH
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)
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FIND_LIBRARY (SZIP_LIBRARY_RELEASE
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NAMES ${SZIP_SEARCH_RELEASE_NAMES}
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PATHS ${SZIP_LIB_SEARCH_DIRS}
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NO_DEFAULT_PATH
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)
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SZIP_ADJUST_LIB_VARS (SZIP)
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IF (SZIP_INCLUDE_DIR AND SZIP_LIBRARY)
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SET (SZIP_FOUND 1)
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SET (SZIP_LIBRARIES ${SZIP_LIBRARY})
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SET (SZIP_INCLUDE_DIRS ${SZIP_INCLUDE_DIR})
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IF (SZIP_LIBRARY_DEBUG)
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GET_FILENAME_COMPONENT (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_DEBUG} PATH)
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SET (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
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ELSEIF (SZIP_LIBRARY_RELEASE)
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GET_FILENAME_COMPONENT (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_RELEASE} PATH)
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SET (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
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ENDIF (SZIP_LIBRARY_DEBUG)
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ELSE (SZIP_INCLUDE_DIR AND SZIP_LIBRARY)
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SET (SZIP_FOUND 0)
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SET (SZIP_LIBRARIES)
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SET (SZIP_INCLUDE_DIRS)
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ENDIF (SZIP_INCLUDE_DIR AND SZIP_LIBRARY)
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# Report the results.
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IF (NOT SZIP_FOUND)
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SET (SZIP_DIR_MESSAGE
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"SZip was not found. Make sure SZIP_LIBRARY and SZIP_INCLUDE_DIR are set or set the SZIP_INSTALL environment variable."
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)
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IF (NOT SZIP_FIND_QUIETLY)
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MESSAGE (STATUS "${SZIP_DIR_MESSAGE}")
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ELSE (NOT SZIP_FIND_QUIETLY)
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IF (SZIP_FIND_REQUIRED)
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MESSAGE (FATAL_ERROR "SZip was NOT found and is Required by this project")
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ENDIF (SZIP_FIND_REQUIRED)
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ENDIF (NOT SZIP_FIND_QUIETLY)
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ENDIF (NOT SZIP_FOUND)
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IF (SZIP_FOUND)
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INCLUDE (CheckSymbolExists)
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#############################################
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# Find out if SZIP was build using dll's
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#############################################
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# Save required variable
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SET (CMAKE_REQUIRED_INCLUDES_SAVE ${CMAKE_REQUIRED_INCLUDES})
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SET (CMAKE_REQUIRED_FLAGS_SAVE ${CMAKE_REQUIRED_FLAGS})
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# Add SZIP_INCLUDE_DIR to CMAKE_REQUIRED_INCLUDES
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SET (CMAKE_REQUIRED_INCLUDES "${CMAKE_REQUIRED_INCLUDES};${SZIP_INCLUDE_DIRS}")
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CHECK_SYMBOL_EXISTS (SZIP_BUILT_AS_DYNAMIC_LIB "SZconfig.h" HAVE_SZIP_DLL)
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IF (HAVE_SZIP_DLL STREQUAL "TRUE")
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SET (HAVE_SZIP_DLL "1")
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ENDIF (HAVE_SZIP_DLL STREQUAL "TRUE")
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# Restore CMAKE_REQUIRED_INCLUDES and CMAKE_REQUIRED_FLAGS variables
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SET (CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES_SAVE})
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SET (CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS_SAVE})
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#
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#############################################
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ENDIF (SZIP_FOUND)
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IF (FIND_SZIP_DEBUG)
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MESSAGE (STATUS "SZIP_INCLUDE_DIR: ${SZIP_INCLUDE_DIR}")
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MESSAGE (STATUS "SZIP_INCLUDE_DIRS: ${SZIP_INCLUDE_DIRS}")
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MESSAGE (STATUS "SZIP_LIBRARY_DEBUG: ${SZIP_LIBRARY_DEBUG}")
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MESSAGE (STATUS "SZIP_LIBRARY_RELEASE: ${SZIP_LIBRARY_RELEASE}")
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MESSAGE (STATUS "HAVE_SZIP_DLL: ${HAVE_SZIP_DLL}")
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MESSAGE (STATUS "CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}")
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ENDIF (FIND_SZIP_DEBUG)
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64
cmake/modules/FindSzip.cmake
Normal file
64
cmake/modules/FindSzip.cmake
Normal file
@ -0,0 +1,64 @@
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# Searches for an installation of the szip library. On success, it sets the following variables:
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#
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# Szip_FOUND Set to true to indicate the szip library was found
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# Szip_INCLUDE_DIRS The directory containing the header file szip/szip.h
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# Szip_LIBRARIES The libraries needed to use the szip library
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#
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# To specify an additional directory to search, set Szip_ROOT.
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#
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# Author: Siddhartha Chaudhuri, 2009
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#
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# Look for the header, first in the user-specified location and then in the system locations
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SET(Szip_INCLUDE_DOC "The directory containing the header file szip.h")
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FIND_PATH(Szip_INCLUDE_DIRS NAMES szlib.h szip.h szip/szip.h PATHS ${Szip_ROOT} ${Szip_ROOT}/include DOC ${Szip_INCLUDE_DOC} NO_DEFAULT_PATH)
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IF(NOT Szip_INCLUDE_DIRS) # now look in system locations
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FIND_PATH(Szip_INCLUDE_DIRS NAMES szlib.h szip.h szip/szip.h DOC ${Szip_INCLUDE_DOC})
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ENDIF(NOT Szip_INCLUDE_DIRS)
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SET(Szip_FOUND FALSE)
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IF(Szip_INCLUDE_DIRS)
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SET(Szip_LIBRARY_DIRS ${Szip_INCLUDE_DIRS})
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IF("${Szip_LIBRARY_DIRS}" MATCHES "/include$")
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# Strip off the trailing "/include" in the path.
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GET_FILENAME_COMPONENT(Szip_LIBRARY_DIRS ${Szip_LIBRARY_DIRS} PATH)
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ENDIF("${Szip_LIBRARY_DIRS}" MATCHES "/include$")
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IF(EXISTS "${Szip_LIBRARY_DIRS}/lib")
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SET(Szip_LIBRARY_DIRS ${Szip_LIBRARY_DIRS}/lib)
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ENDIF(EXISTS "${Szip_LIBRARY_DIRS}/lib")
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# Find Szip libraries
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FIND_LIBRARY(Szip_DEBUG_LIBRARY NAMES szipd szip_d libszipd libszip_d szip libszip sz2 libsz2
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PATH_SUFFIXES Debug ${CMAKE_LIBRARY_ARCHITECTURE} ${CMAKE_LIBRARY_ARCHITECTURE}/Debug
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PATHS ${Szip_LIBRARY_DIRS} NO_DEFAULT_PATH)
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FIND_LIBRARY(Szip_RELEASE_LIBRARY NAMES szip libszip sz libsz sz2 libsz2
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PATH_SUFFIXES Release ${CMAKE_LIBRARY_ARCHITECTURE} ${CMAKE_LIBRARY_ARCHITECTURE}/Release
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PATHS ${Szip_LIBRARY_DIRS} NO_DEFAULT_PATH)
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SET(Szip_LIBRARIES )
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IF(Szip_DEBUG_LIBRARY AND Szip_RELEASE_LIBRARY)
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SET(Szip_LIBRARIES debug ${Szip_DEBUG_LIBRARY} optimized ${Szip_RELEASE_LIBRARY})
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ELSEIF(Szip_DEBUG_LIBRARY)
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SET(Szip_LIBRARIES ${Szip_DEBUG_LIBRARY})
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ELSEIF(Szip_RELEASE_LIBRARY)
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SET(Szip_LIBRARIES ${Szip_RELEASE_LIBRARY})
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ENDIF(Szip_DEBUG_LIBRARY AND Szip_RELEASE_LIBRARY)
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IF(Szip_LIBRARIES)
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SET(Szip_FOUND TRUE)
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ENDIF(Szip_LIBRARIES)
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ENDIF(Szip_INCLUDE_DIRS)
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IF(Szip_FOUND)
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# IF(NOT Szip_FIND_QUIETLY)
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MESSAGE(STATUS "Found Szip: headers at ${Szip_INCLUDE_DIRS}, libraries at ${Szip_LIBRARY_DIRS}")
|
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MESSAGE(STATUS " library is ${Szip_LIBRARIES}")
|
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# ENDIF(NOT Szip_FIND_QUIETLY)
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ELSE(Szip_FOUND)
|
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IF(Szip_FIND_REQUIRED)
|
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MESSAGE(FATAL_ERROR "Szip library not found")
|
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ENDIF(Szip_FIND_REQUIRED)
|
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ENDIF(Szip_FOUND)
|
@ -935,10 +935,16 @@ This is for internal use only.
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As part of the overall build process, a number of filters are built as shared libraries in the "plugins" directory
|
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— in that directory or the "plugins/.libs" subdirectory.
|
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|
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An option exists to allow some of those filters to be installed into a user-specified directory.
|
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Presumably this directory is part of the value of the HDF5_PLUGIN_PATH environment variable.
|
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The ./configure option is ````--with-plugin-dir=<absolute-directory-path>````.
|
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The corresponding CMake option is ````-DPLUGIN_INSTALL_DIR=<absolute-directory-path>````.
|
||||
An option exists to allow some of those filters to be installed into a user-specified directory. The relevant options are as follows:
|
||||
````
|
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./configure: --with-plugin-dir=<absolute-directory-path>
|
||||
cmake: -DPLUGIN_INSTALL_DIR=<absolute-directory-path>
|
||||
````
|
||||
If the value of the environment variable "HDF5_PLUGIN_PATH" is a single directory, then
|
||||
a good value for the install directory is "$HDF5_PLUGIN_PATH", so for example:
|
||||
````
|
||||
./configure ... --with-plugin-dir="$HDF5_PLUGIN_DIR"
|
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````
|
||||
|
||||
If this option is specified, then as part of the "install" build action,
|
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a specified set of filter shared libraries will be copied into the specified directory.
|
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|
@ -8,6 +8,7 @@
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if test "x$srcdir" = x ; then srcdir=`pwd`; fi
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. ../test_common.sh
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set -x
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set -e
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if test "x$TESTNCZARR" = x1 ; then
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@ -96,6 +97,12 @@ rm -f $file
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fi
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setfilter $zfilt ref_any.cdl "tmp_filt_${zfilt}.cdl" "$zparams" "$zcodec"
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if test "x$TESTNCZARR" = x1 ; then
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if test "x$zfilt" = xszip ; then
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echo "@@@"
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find /usr -name 'libsz*'
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||||
find ${HDF5_PLUGIN_DIR} -name '*sz*.so'
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||||
ldd ${HDF5_PLUGIN_DIR}/libh5szip.so
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fi
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${NCGEN} -4 -lb -o $fileurl "tmp_filt_${zfilt}.cdl"
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||||
${NCDUMP} -n $zfilt -sF $fileurl > "tmp_filt_${zfilt}.tmp"
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else
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||||
|
@ -8,7 +8,9 @@
|
||||
if test "x$srcdir" = x ; then srcdir=`pwd`; fi
|
||||
. ../test_common.sh
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||||
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||||
set -x
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||||
set -e
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||||
|
||||
echo ""
|
||||
|
||||
# get some config.h parameters
|
||||
|
@ -4,6 +4,7 @@ if test "x$srcdir" = x ; then srcdir=`pwd`; fi
|
||||
. ../test_common.sh
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||||
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||||
# This shell script tests the output from several previous tests.
|
||||
set -x
|
||||
set -e
|
||||
|
||||
echo ""
|
||||
|
@ -10,10 +10,10 @@ TESTS_ENVIRONMENT =
|
||||
|
||||
#TEST_EXTENSIONS = .sh
|
||||
|
||||
#SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
||||
#sh_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
||||
#LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
||||
#TESTS_ENVIRONMENT += export SETX=1;
|
||||
SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
||||
sh_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
||||
LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
||||
TESTS_ENVIRONMENT += export SETX=1;
|
||||
|
||||
AM_CPPFLAGS += -I${top_srcdir} -I${top_srcdir}/libnczarr
|
||||
AM_LDFLAGS += ${top_builddir}/liblib/libnetcdf.la
|
||||
|
Loading…
Reference in New Issue
Block a user