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Merge pull request #1954 from lesserwhirls/links

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Update links related to netCDF-Java and the TDS
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Ward Fisher 2021-02-26 16:16:10 -07:00 committed by GitHub
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2
README.md
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@ -47,7 +47,7 @@ software for various languages:
* [C library and utilities](http://github.com/Unidata/netcdf-c)
* [Fortran](http://github.com/Unidata/netcdf-fortran)
* [Java](http://www.unidata.ucar.edu/downloads/netcdf/netcdf-java-4/)
* [Java](https://www.unidata.ucar.edu/downloads/netcdf-java/
* [Python](http://github.com/Unidata/netcdf4-python)
* [C++](http://github.com/Unidata/netcdf-cxx4)

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docs/FAQ.md
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@ -1655,8 +1655,8 @@ experimental version is available now in the snapshot distributions.
Other clients and servers support access through a netCDF interface to
netCDF and other kinds of data, including clients written using the
[netCDF-Java library](http://www.unidata.ucar.edu/software/netcdf-java/) and servers that use the
[THREDDS Data Server](/software/thredds/current/tds/TDS.html).
[netCDF-Java library](https://www.unidata.ucar.edu/software/netcdf-java/) and servers that use the
[THREDDS Data Server](https://www.unidata.ucar.edu/software/tds/).
The [GrADS Data Server](http://grads.iges.org/grads/gds/) provides
subsetting and analysis services across the Internet for any
@ -1677,7 +1677,7 @@ Several programs and packages have been developed that convert between
[GDAL](http://www.gdal.org/), [GrADS](software.html#GrADS), and
[wgrib2](http://www.cpc.noaa.gov/products/wesley/wgrib2/).
The Unidata [netCDF Java Library](http://www.unidata.ucar.edu/software/netcdf-java/index.html) can
The Unidata [netCDF Java Library](https://www.unidata.ucar.edu/software/netcdf-java/) can
read GRIB1 and GRIB2 data (and many other data formats) through a netCDF
interface. As a command-line example, you could convert *fileIn.grib* to
*fileOut.nc* as follows:
@ -1987,8 +1987,6 @@ What other future work on netCDF is planned? {#What-other-future-work-on-netCDF-
Issues, bugs, and plans for netCDF are maintained in the Unidata issue
tracker sites for
[netCDF-C](https://www.unidata.ucar.edu/jira/browse/NCF), [Common Data Model / NetCDF-Java](https://www.unidata.ucar.edu/jira/browse/CDM),
[netCDF-Fortran](https://www.unidata.ucar.edu/jira/browse/NCFORTRAN),
and [netCDF-CXX4](https://www.unidata.ucar.edu/jira/browse/NCXXF), and
[old netCDF-C++
(deprecated)](https://www.unidata.ucar.edu/jira/browse/NCCPP).
[netCDF-C](https://github.com/Unidata/netcdf-c/issues), [Common Data Model / NetCDF-Java](https://github.com/Unidata/netcdf-java/issues),
[netCDF-Fortran](https://github.com/Unidata/netcdf-fortran/issues),
and [netCDF-CXX4](https://github.com/Unidata/netcdf-cxx4/issues), and

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docs/static-pages/software.html
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@ -1212,7 +1212,7 @@ or using ECMWF reanalysis on a reduced grid
</li>
<li>
Support for non-gridded data through the <a
href="/software/netcdf-java/CDM/" >Common Data Model (CDM)</a>
href="https://docs.unidata.ucar.edu/netcdf-java/current/userguide/common_data_model_overview.html">Common Data Model (CDM)</a>
</li>
</ul>
The IDV uses the <a href="http://www.ssec.wisc.edu/~billh/visad.html"
@ -1377,23 +1377,25 @@ or using ECMWF reanalysis on a reduced grid
<h2><a id="Java interface" name="Java interface">Java interface</a></h2>
<p>
The <a href="/software/netcdf-java/"
>NetCDF-Java 4.2 Library</a> is a Java interface to netCDF files,
>NetCDF-Java Library</a> is a Java interface to netCDF files,
as well as to many other types of scientific data formats. It
is freely available and the source code is released under the
(MIT-style) netCDF C library license. Previous versions use the GNU
Lesser General Public License (LGPL).
BSD-3 license. Previous versions used the (MIT-style) netCDF C
library license, and prior to that, the GNU Lesser General
Public License (LGPL).
</p>
<p>
The library implements a Common Data Model (<a
href="/software/netcdf-java/CDM/" >CDM</a>), a generalization
href="https://docs.unidata.ucar.edu/netcdf-java/current/userguide/common_data_model_overview.html" >CDM</a>), a generalization
of the netCDF, OpenDAP and HDF5 data models. The library is a
prototype for the netCDF-4 project, which provides a C language API
for the "data access layer" of the CDM, on top of the HDF5 file
format. The NetCDF-Java library is a 100% Java framework for <em>reading</em> netCDF
and other file formats into the CDM, as well as <em>writing</em> to the
netCDF-3 file format.
netCDF-3 file format. Write support for the netCDF-4 is provided by
native calls to the netCDF-C library.
The library also implements <a
href="http://www.unidata.ucar.edu/software/netcdf/ncml/">NcML</a>,
href="https://docs.unidata.ucar.edu/netcdf-java/current/userguide/ncml_overview.html">NcML</a>,
which allows you to add metadata to CDM datasets, as well as to create
virtual datasets through aggregation.
</p>
@ -1913,7 +1915,7 @@ or using ECMWF reanalysis on a reduced grid
<a
href="http://nctoolbox.github.io/nctoolbox/" >nctoolbox</a> is a MATLAB
interface that provides read-only access to <a
href="/software/netcdf-java/CDM/index.html" >Common Data Model</a>
href="https://docs.unidata.ucar.edu/netcdf-java/current/userguide/common_data_model_overview.html" >Common Data Model</a>
datasets.
Under the hood, nctoolbox uses Unidata's NetCDF-Java as the data access layer.
This allows nctoolbox to access to netCDF, OPeNDAP, HDF5, GRIB, GRIB2, HDF4,
@ -2964,7 +2966,7 @@ or using ECMWF reanalysis on a reduced grid
</p>
<p>
xray adopts the <a
href="http://www.unidata.ucar.edu/software/thredds/current/netcdf-java/CDM"
href="https://docs.unidata.ucar.edu/netcdf-java/current/userguide/common_data_model_overview.html"
>Common Data Model</a> for self-describing scientific data in
widespread use in the Earth sciences (e.g., netCDF and OPeNDAP):
xray.Dataset is an in-memory representation of a netCDF file.

6
docs/testserver.dox
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@ -13,7 +13,7 @@
The test suite for the DAP2 and DAP4 (aka DAP) protocols optionally
uses a continuously running test server to verify that the
DAP protocols can successfully be used against a remote server such
as a Unidata Thredds server or a OPeNDAP Hyrax server.
as a Unidata THREDDS Data Server or a OPeNDAP Hyrax server.
The way that this is tests is to establish two servlets running
under a Tomcat server on some machine with a known IP address
@ -156,9 +156,9 @@ to verify that the d4ts test server is working.
# Building d4ts.war and dts.war {#remotesvc_buildservlets}
In order to build the servlet (.war) files, you will need to
clone the Thredds directory on github: https://github.com/Unidata/thredds.
clone the Thredds directory on github: https://github.com/Unidata/tds.
Once you have a clone, you will need to enter the thredds directory
Once you have a clone, you will need to enter the tds directory
and build by invoking gradle using this command.
````
./gradlew --info --no-daemon clean assemble

4
docs/tutorial.dox
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@ -116,7 +116,7 @@ support-netcdf@unidata.ucar.edu.
Unidata supports netCDF APIs in C, C++, Fortran 77, Fortran 90, and
Java.
The <a href="http://www.unidata.ucar.edu/software/netcdf-java">netCDF
The <a href="https://www.unidata.ucar.edu/software/netcdf-java/">netCDF
Java</a> API is a complete implementation of netCDF in Java. It is
distributed independently of the other APIs. If you are writing web
server software, you should certainly be doing so in Java.
@ -169,7 +169,7 @@ C, C++, Fortran 77, Fortran 90, and Java APIs:
- C++ - The NetCDF C++ Interface Guide.
- Fortran 77 - The NetCDF Fortran 77 Interface Guide.
- Fortran 90 - The NetCDF Fortran 90 Interface Guide.
- Java <a href="http://www.unidata.ucar.edu/software/netcdf-java/v2.1/NetcdfJavaUserManual.htm">The netCDF-Java Users Guide</a>.
- Java - <a href="https://docs.unidata.ucar.edu/netcdf-java/current/userguide/">The netCDF-Java User Guide</a>.
Man pages for the C, F77, and F90 interfaces, and ncgen and ncdump,
are available on the documentation page of the netCDF web site