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cleanup of whitespace in include directory

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This commit is contained in:
Ed Hartnett 2019-02-19 06:10:30 -07:00
parent 58a801c91a
commit a22e895c10
7 changed files with 572 additions and 572 deletions
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168
include/nc3dispatch.h
View File

@ -50,138 +50,138 @@ extern "C" {
*/
/* WARNING: this signature differs from external nc_create API*/
extern int
NC3_create(const char *path, int cmode,
size_t initialsz, int basepe, size_t *chunksizehintp,
void* mpidata, struct NC_Dispatch*, NC* ncp);
extern int
NC3_create(const char *path, int cmode,
size_t initialsz, int basepe, size_t *chunksizehintp,
void* mpidata, struct NC_Dispatch*, NC* ncp);
/* WARNING: this signature differs from external nc_open API*/
extern int
NC3_open(const char *path, int mode,
int basepe, size_t *chunksizehintp,
void* mpidata, NC_Dispatch*, NC* ncp);
extern int
NC3_open(const char *path, int mode,
int basepe, size_t *chunksizehintp,
void* mpidata, NC_Dispatch*, NC* ncp);
extern int
NC3_new_nc(NC**);
extern int
NC3_new_nc(NC**);
extern int
NC3_redef(int ncid);
extern int
NC3_redef(int ncid);
extern int
NC3__enddef(int ncid, size_t h_minfree, size_t v_align,
size_t v_minfree, size_t r_align);
extern int
NC3__enddef(int ncid, size_t h_minfree, size_t v_align,
size_t v_minfree, size_t r_align);
extern int
NC3_sync(int ncid);
extern int
NC3_sync(int ncid);
extern int
NC3_abort(int ncid);
extern int
NC3_abort(int ncid);
extern int
NC3_close(int ncid,void*);
extern int
NC3_close(int ncid,void*);
extern int
NC3_set_fill(int ncid, int fillmode, int *old_modep);
extern int
NC3_set_fill(int ncid, int fillmode, int *old_modep);
extern int
NC3_set_base_pe(int ncid, int pe);
extern int
NC3_set_base_pe(int ncid, int pe);
extern int
NC3_inq_base_pe(int ncid, int *pe);
extern int
NC3_inq_base_pe(int ncid, int *pe);
extern int
NC3_inq_format(int ncid, int *formatp);
extern int
NC3_inq_format(int ncid, int *formatp);
extern int
NC3_inq_format_extended(int ncid, int *formatp, int *modep);
extern int
NC3_inq_format_extended(int ncid, int *formatp, int *modep);
extern int
NC3_inq(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimidp);
extern int
NC3_inq(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimidp);
extern int
NC3_inq_type(int, nc_type, char *, size_t *);
extern int
NC3_inq_type(int, nc_type, char *, size_t *);
/* Begin _dim */
extern int
NC3_def_dim(int ncid, const char *name, size_t len, int *idp);
extern int
NC3_def_dim(int ncid, const char *name, size_t len, int *idp);
extern int
NC3_inq_dimid(int ncid, const char *name, int *idp);
extern int
NC3_inq_dimid(int ncid, const char *name, int *idp);
extern int
NC3_inq_dim(int ncid, int dimid, char *name, size_t *lenp);
extern int
NC3_inq_dim(int ncid, int dimid, char *name, size_t *lenp);
extern int
NC3_inq_unlimdim(int ncid, int *unlimdimidp);
extern int
NC3_inq_unlimdim(int ncid, int *unlimdimidp);
extern int
NC3_rename_dim(int ncid, int dimid, const char *name);
extern int
NC3_rename_dim(int ncid, int dimid, const char *name);
/* End _dim */
/* Begin _att */
extern int
NC3_inq_att(int ncid, int varid, const char *name,
nc_type *xtypep, size_t *lenp);
extern int
NC3_inq_att(int ncid, int varid, const char *name,
nc_type *xtypep, size_t *lenp);
extern int
NC3_inq_attid(int ncid, int varid, const char *name, int *idp);
extern int
NC3_inq_attid(int ncid, int varid, const char *name, int *idp);
extern int
NC3_inq_attname(int ncid, int varid, int attnum, char *name);
extern int
NC3_inq_attname(int ncid, int varid, int attnum, char *name);
extern int
NC3_rename_att(int ncid, int varid, const char *name, const char *newname);
extern int
NC3_rename_att(int ncid, int varid, const char *name, const char *newname);
extern int
NC3_del_att(int ncid, int varid, const char*);
extern int
NC3_del_att(int ncid, int varid, const char*);
/* End _att */
/* Begin {put,get}_att */
extern int
NC3_get_att(int ncid, int varid, const char *name, void *value, nc_type);
extern int
NC3_get_att(int ncid, int varid, const char *name, void *value, nc_type);
extern int
NC3_put_att(int ncid, int varid, const char *name, nc_type datatype,
size_t len, const void *value, nc_type);
extern int
NC3_put_att(int ncid, int varid, const char *name, nc_type datatype,
size_t len, const void *value, nc_type);
/* End {put,get}_att */
/* Begin _var */
extern int
NC3_def_var(int ncid, const char *name,
nc_type xtype, int ndims, const int *dimidsp, int *varidp);
extern int
NC3_def_var(int ncid, const char *name,
nc_type xtype, int ndims, const int *dimidsp, int *varidp);
extern int
NC3_inq_var(int ncid, int varid, char *name,
nc_type *xtypep, int *ndimsp, int *dimidsp, int *nattsp,
int *no_fill, void *fill_valuep);
extern int
NC3_inq_var(int ncid, int varid, char *name,
nc_type *xtypep, int *ndimsp, int *dimidsp, int *nattsp,
int *no_fill, void *fill_valuep);
extern int
NC3_inq_varid(int ncid, const char *name, int *varidp);
extern int
NC3_inq_varid(int ncid, const char *name, int *varidp);
extern int
NC3_rename_var(int ncid, int varid, const char *name);
extern int
NC3_rename_var(int ncid, int varid, const char *name);
extern int
NC3_def_var_fill(int,int,int,const void*);
extern int
NC3_def_var_fill(int,int,int,const void*);
extern int
NC3_put_vara(int ncid, int varid,
const size_t *start, const size_t *count,
const void *value, nc_type);
extern int
NC3_put_vara(int ncid, int varid,
const size_t *start, const size_t *count,
const void *value, nc_type);
extern int
NC3_get_vara(int ncid, int varid,
const size_t *start, const size_t *count,
void *value, nc_type);
extern int
NC3_get_vara(int ncid, int varid,
const size_t *start, const size_t *count,
void *value, nc_type);
/* End _var */
extern int NC3_initialize();
extern int NC3_finalize();
extern int NC3_initialize();
extern int NC3_finalize();
#if defined(__cplusplus)
}

250
include/nc3internal.h
View File

@ -1,21 +1,21 @@
/*
* Copyright 2018, University Corporation for Atmospheric Research
* Copyright 2018, University Corporation for Atmospheric Research
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*/
#ifndef _NC3INTERNAL_
#define _NC3INTERNAL_
/*
* netcdf library 'private' data structures, objects and interfaces
* netcdf library 'private' data structures, objects and interfaces
*/
#include "config.h"
#include <stddef.h> /* size_t */
#include <stddef.h> /* size_t */
#ifndef HAVE_STDINT_H
# include "pstdint.h" /* attempts to define uint32_t etc portably */
# include "pstdint.h" /* attempts to define uint32_t etc portably */
#else
# include <stdint.h>
#endif /* HAVE_STDINT_H */
#include <sys/types.h> /* off_t */
#include <sys/types.h> /* off_t */
#include "netcdf.h"
#ifdef USE_PARALLEL
#include "netcdf_par.h"
@ -48,30 +48,30 @@ typedef struct NC3_INFO NC3_INFO;
* The internal data types
*/
typedef enum {
NC_UNSPECIFIED = 0,
/* future NC_BITFIELD = 7, */
/* NC_STRING = 8, */
NC_DIMENSION = 10,
NC_VARIABLE = 11,
NC_ATTRIBUTE = 12
NC_UNSPECIFIED = 0,
/* future NC_BITFIELD = 7, */
/* NC_STRING = 8, */
NC_DIMENSION = 10,
NC_VARIABLE = 11,
NC_ATTRIBUTE = 12
} NCtype;
/*
* NC dimension structure
*/
typedef struct {
/* all xdr'd */
NC_string* name;
size_t size;
/* all xdr'd */
NC_string* name;
size_t size;
} NC_dim;
typedef struct NC_dimarray {
size_t nalloc; /* number allocated >= nelems */
/* below gets xdr'd */
/* NCtype type = NC_DIMENSION */
size_t nelems; /* length of the array */
NC_hashmap *hashmap;
NC_dim **value;
size_t nalloc; /* number allocated >= nelems */
/* below gets xdr'd */
/* NCtype type = NC_DIMENSION */
size_t nelems; /* length of the array */
NC_hashmap *hashmap;
NC_dim **value;
} NC_dimarray;
/* Begin defined in dim.c */
@ -105,22 +105,22 @@ elem_NC_dimarray(const NC_dimarray *ncap, size_t elem);
* NC attribute
*/
typedef struct {
size_t xsz; /* amount of space at xvalue */
/* begin xdr */
NC_string *name;
nc_type type; /* the discriminant */
size_t nelems; /* length of the array */
void *xvalue; /* the actual data, in external representation */
/* end xdr */
size_t xsz; /* amount of space at xvalue */
/* begin xdr */
NC_string *name;
nc_type type; /* the discriminant */
size_t nelems; /* length of the array */
void *xvalue; /* the actual data, in external representation */
/* end xdr */
} NC_attr;
typedef struct NC_attrarray {
size_t nalloc; /* number allocated >= nelems */
/* begin xdr */
/* NCtype type = NC_ATTRIBUTE */
size_t nelems; /* length of the array */
NC_attr **value;
/* end xdr */
size_t nalloc; /* number allocated >= nelems */
/* begin xdr */
/* NCtype type = NC_ATTRIBUTE */
size_t nelems; /* length of the array */
NC_attr **value;
/* end xdr */
} NC_attrarray;
/* Begin defined in attr.c */
@ -130,9 +130,9 @@ free_NC_attr(NC_attr *attrp);
extern NC_attr *
new_x_NC_attr(
NC_string *strp,
nc_type type,
size_t nelems);
NC_string *strp,
nc_type type,
size_t nelems);
extern NC_attr **
NC_findattr(const NC_attrarray *ncap, const char *name);
@ -158,29 +158,29 @@ elem_NC_attrarray(const NC_attrarray *ncap, size_t elem);
* NC variable: description and data
*/
typedef struct NC_var {
size_t xsz; /* xszof 1 element */
size_t *shape; /* compiled info: dim->size of each dim */
off_t *dsizes; /* compiled info: the right to left product of shape */
/* begin xdr */
NC_string* name;
/* next two: formerly NC_iarray *assoc */ /* user definition */
size_t ndims; /* assoc->count */
int *dimids; /* assoc->value */
NC_attrarray attrs;
nc_type type; /* the discriminant */
long long len; /* the total length originally allocated */
off_t begin;
/* end xdr */
int no_fill; /* whether fill mode is ON or OFF */
size_t xsz; /* xszof 1 element */
size_t *shape; /* compiled info: dim->size of each dim */
off_t *dsizes; /* compiled info: the right to left product of shape */
/* begin xdr */
NC_string* name;
/* next two: formerly NC_iarray *assoc */ /* user definition */
size_t ndims; /* assoc->count */
int *dimids; /* assoc->value */
NC_attrarray attrs;
nc_type type; /* the discriminant */
long long len; /* the total length originally allocated */
off_t begin;
/* end xdr */
int no_fill; /* whether fill mode is ON or OFF */
} NC_var;
typedef struct NC_vararray {
size_t nalloc; /* number allocated >= nelems */
/* begin xdr */
/* NCtype type = NC_VARIABLE */
size_t nelems; /* length of the array */
NC_hashmap *hashmap;
NC_var **value;
size_t nalloc; /* number allocated >= nelems */
/* begin xdr */
/* NCtype type = NC_VARIABLE */
size_t nelems; /* length of the array */
NC_hashmap *hashmap;
NC_var **value;
} NC_vararray;
/* Begin defined in var.c */
@ -190,8 +190,8 @@ free_NC_var(NC_var *varp);
extern NC_var *
new_x_NC_var(
NC_string *strp,
size_t ndims);
NC_string *strp,
size_t ndims);
/* vararray */
@ -218,106 +218,106 @@ NC_lookupvar(NC3_INFO* ncp, int varid, NC_var **varp);
/* End defined in var.c */
#define IS_RECVAR(vp) \
((vp)->shape != NULL ? (*(vp)->shape == NC_UNLIMITED) : 0 )
#define IS_RECVAR(vp) \
((vp)->shape != NULL ? (*(vp)->shape == NC_UNLIMITED) : 0 )
#ifdef LOCKNUMREC
/*
* typedef SHMEM type
* for whenever the SHMEM functions can handle other than shorts
*/
typedef unsigned short int ushmem_t;
typedef short int shmem_t;
typedef unsigned short int ushmem_t;
typedef short int shmem_t;
#endif
struct NC3_INFO {
/* contains the previous NC during redef. */
NC3_INFO *old;
/* flags */
#define NC_CREAT 2 /* in create phase, cleared by ncendef */
#define NC_INDEF 8 /* in define mode, cleared by ncendef */
#define NC_NSYNC 0x10 /* synchronise numrecs on change */
#define NC_HSYNC 0x20 /* synchronise whole header on change */
#define NC_NDIRTY 0x40 /* numrecs has changed */
/* contains the previous NC during redef. */
NC3_INFO *old;
/* flags */
#define NC_CREAT 2 /* in create phase, cleared by ncendef */
#define NC_INDEF 8 /* in define mode, cleared by ncendef */
#define NC_NSYNC 0x10 /* synchronise numrecs on change */
#define NC_HSYNC 0x20 /* synchronise whole header on change */
#define NC_NDIRTY 0x40 /* numrecs has changed */
#define NC_HDIRTY 0x80 /* header info has changed */
/* NC_NOFILL in netcdf.h, historical interface */
int flags;
struct ncio* nciop;
size_t chunk; /* largest extent this layer will request from ncio->get() */
size_t xsz; /* external size of this header, == var[0].begin */
off_t begin_var; /* position of the first (non-record) var */
off_t begin_rec; /* position of the first 'record' */
/* Don't constrain maximum size of record unnecessarily */
/* NC_NOFILL in netcdf.h, historical interface */
int flags;
struct ncio* nciop;
size_t chunk; /* largest extent this layer will request from ncio->get() */
size_t xsz; /* external size of this header, == var[0].begin */
off_t begin_var; /* position of the first (non-record) var */
off_t begin_rec; /* position of the first 'record' */
/* Don't constrain maximum size of record unnecessarily */
#if SIZEOF_OFF_T > SIZEOF_SIZE_T
off_t recsize; /* length of 'record' */
off_t recsize; /* length of 'record' */
#else
size_t recsize; /* length of 'record' */
size_t recsize; /* length of 'record' */
#endif
/* below gets xdr'd */
size_t numrecs; /* number of 'records' allocated */
NC_dimarray dims;
NC_attrarray attrs;
NC_vararray vars;
/* below gets xdr'd */
size_t numrecs; /* number of 'records' allocated */
NC_dimarray dims;
NC_attrarray attrs;
NC_vararray vars;
#ifdef LOCKNUMREC
/* size and named indexes for the lock array protecting NC.numrecs */
# define LOCKNUMREC_DIM 4
# define LOCKNUMREC_VALUE 0
# define LOCKNUMREC_LOCK 1
# define LOCKNUMREC_SERVING 2
# define LOCKNUMREC_BASEPE 3
/* Used on Cray T3E MPP to maintain the
* integrity of numrecs for an unlimited dimension
*/
ushmem_t lock[LOCKNUMREC_DIM];
# define LOCKNUMREC_DIM 4
# define LOCKNUMREC_VALUE 0
# define LOCKNUMREC_LOCK 1
# define LOCKNUMREC_SERVING 2
# define LOCKNUMREC_BASEPE 3
/* Used on Cray T3E MPP to maintain the
* integrity of numrecs for an unlimited dimension
*/
ushmem_t lock[LOCKNUMREC_DIM];
#endif
};
#define NC_readonly(ncp) \
(!fIsSet((ncp)->nciop->ioflags, NC_WRITE))
#define NC_readonly(ncp) \
(!fIsSet((ncp)->nciop->ioflags, NC_WRITE))
#define NC_set_readonly(ncp) \
fClr((ncp)->flags, NC_WRITE)
#define NC_set_readonly(ncp) \
fClr((ncp)->flags, NC_WRITE)
#define NC_IsNew(ncp) \
fIsSet((ncp)->flags, NC_CREAT)
#define NC_IsNew(ncp) \
fIsSet((ncp)->flags, NC_CREAT)
#define NC_indef(ncp) \
(NC_IsNew(ncp) || fIsSet((ncp)->flags, NC_INDEF))
#define NC_indef(ncp) \
(NC_IsNew(ncp) || fIsSet((ncp)->flags, NC_INDEF))
#define set_NC_ndirty(ncp) \
fSet((ncp)->flags, NC_NDIRTY)
#define set_NC_ndirty(ncp) \
fSet((ncp)->flags, NC_NDIRTY)
#define NC_ndirty(ncp) \
fIsSet((ncp)->flags, NC_NDIRTY)
#define NC_ndirty(ncp) \
fIsSet((ncp)->flags, NC_NDIRTY)
#define set_NC_hdirty(ncp) \
fSet((ncp)->flags, NC_HDIRTY)
#define set_NC_hdirty(ncp) \
fSet((ncp)->flags, NC_HDIRTY)
#define NC_hdirty(ncp) \
fIsSet((ncp)->flags, NC_HDIRTY)
#define NC_hdirty(ncp) \
fIsSet((ncp)->flags, NC_HDIRTY)
#define NC_dofill(ncp) \
(!fIsSet((ncp)->flags, NC_NOFILL))
#define NC_dofill(ncp) \
(!fIsSet((ncp)->flags, NC_NOFILL))
#define NC_doHsync(ncp) \
fIsSet((ncp)->flags, NC_HSYNC)
#define NC_doHsync(ncp) \
fIsSet((ncp)->flags, NC_HSYNC)
#define NC_doNsync(ncp) \
fIsSet((ncp)->flags, NC_NSYNC)
#define NC_doNsync(ncp) \
fIsSet((ncp)->flags, NC_NSYNC)
#ifndef LOCKNUMREC
# define NC_get_numrecs(nc3i) \
((nc3i)->numrecs)
# define NC_get_numrecs(nc3i) \
((nc3i)->numrecs)
# define NC_set_numrecs(nc3i, nrecs) \
{(nc3i)->numrecs = (nrecs);}
# define NC_set_numrecs(nc3i, nrecs) \
{(nc3i)->numrecs = (nrecs);}
# define NC_increase_numrecs(nc3i, nrecs) \
{if((nrecs) > (nc3i)->numrecs) ((nc3i)->numrecs = (nrecs));}
# define NC_increase_numrecs(nc3i, nrecs) \
{if((nrecs) > (nc3i)->numrecs) ((nc3i)->numrecs = (nrecs));}
#else
size_t NC_get_numrecs(const NC3_INFO *nc3i);
void NC_set_numrecs(NC3_INFO *nc3i, size_t nrecs);
void NC_increase_numrecs(NC3_INFO *nc3i, size_t nrecs);
size_t NC_get_numrecs(const NC3_INFO *nc3i);
void NC_set_numrecs(NC3_INFO *nc3i, size_t nrecs);
void NC_increase_numrecs(NC3_INFO *nc3i, size_t nrecs);
#endif
/* Begin defined in nc.c */

320
include/nc4dispatch.h
View File

@ -20,247 +20,247 @@
extern "C" {
#endif
EXTERNL int
NC4_create(const char *path, int cmode,
size_t initialsz, int basepe, size_t *chunksizehintp,
void* parameters, NC_Dispatch*, NC*);
EXTERNL int
NC4_create(const char *path, int cmode,
size_t initialsz, int basepe, size_t *chunksizehintp,
void* parameters, NC_Dispatch*, NC*);
EXTERNL int
NC4_open(const char *path, int mode,
int basepe, size_t *chunksizehintp,
void* parameters, NC_Dispatch*, NC*);
EXTERNL int
NC4_open(const char *path, int mode,
int basepe, size_t *chunksizehintp,
void* parameters, NC_Dispatch*, NC*);
EXTERNL int
NC4_redef(int ncid);
EXTERNL int
NC4_redef(int ncid);
EXTERNL int
NC4__enddef(int ncid, size_t h_minfree, size_t v_align,
size_t v_minfree, size_t r_align);
EXTERNL int
NC4__enddef(int ncid, size_t h_minfree, size_t v_align,
size_t v_minfree, size_t r_align);
EXTERNL int
NC4_sync(int ncid);
EXTERNL int
NC4_sync(int ncid);
EXTERNL int
NC4_abort(int ncid);
EXTERNL int
NC4_abort(int ncid);
EXTERNL int
NC4_close(int ncid,void*);
EXTERNL int
NC4_close(int ncid,void*);
EXTERNL int
NC4_set_fill(int ncid, int fillmode, int *old_modep);
EXTERNL int
NC4_set_fill(int ncid, int fillmode, int *old_modep);
EXTERNL int
NC4_set_base_pe(int ncid, int pe);
EXTERNL int
NC4_set_base_pe(int ncid, int pe);
EXTERNL int
NC4_inq_base_pe(int ncid, int *pe);
EXTERNL int
NC4_inq_base_pe(int ncid, int *pe);
EXTERNL int
NC4_inq_format(int ncid, int *formatp);
EXTERNL int
NC4_inq_format(int ncid, int *formatp);
EXTERNL int
NC4_inq_format_extended(int ncid, int *formatp, int *modep);
EXTERNL int
NC4_inq_format_extended(int ncid, int *formatp, int *modep);
EXTERNL int
NC4_inq(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimidp);
EXTERNL int
NC4_inq(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimidp);
EXTERNL int
NC4_inq_type(int, nc_type, char *, size_t *);
EXTERNL int
NC4_inq_type(int, nc_type, char *, size_t *);
/* Begin _dim */
EXTERNL int
NC4_def_dim(int ncid, const char *name, size_t len, int *idp);
EXTERNL int
NC4_def_dim(int ncid, const char *name, size_t len, int *idp);
EXTERNL int
NC4_inq_dimid(int ncid, const char *name, int *idp);
EXTERNL int
NC4_inq_dimid(int ncid, const char *name, int *idp);
EXTERNL int
NC4_inq_dim(int ncid, int dimid, char *name, size_t *lenp);
EXTERNL int
NC4_inq_dim(int ncid, int dimid, char *name, size_t *lenp);
EXTERNL int
NC4_inq_unlimdim(int ncid, int *unlimdimidp);
EXTERNL int
NC4_inq_unlimdim(int ncid, int *unlimdimidp);
EXTERNL int
NC4_rename_dim(int ncid, int dimid, const char *name);
EXTERNL int
NC4_rename_dim(int ncid, int dimid, const char *name);
/* End _dim */
/* Begin _att */
EXTERNL int
NC4_inq_att(int ncid, int varid, const char *name,
nc_type *xtypep, size_t *lenp);
EXTERNL int
NC4_inq_att(int ncid, int varid, const char *name,
nc_type *xtypep, size_t *lenp);
EXTERNL int
NC4_inq_attid(int ncid, int varid, const char *name, int *idp);
EXTERNL int
NC4_inq_attid(int ncid, int varid, const char *name, int *idp);
EXTERNL int
NC4_inq_attname(int ncid, int varid, int attnum, char *name);
EXTERNL int
NC4_inq_attname(int ncid, int varid, int attnum, char *name);
/* End _att */
/* Begin {put,get}_att */
EXTERNL int
NC4_get_att(int ncid, int varid, const char *name, void *value, nc_type);
EXTERNL int
NC4_get_att(int ncid, int varid, const char *name, void *value, nc_type);
/* End {put,get}_att */
/* Begin _var */
EXTERNL int
NC4_def_var(int ncid, const char *name,
nc_type xtype, int ndims, const int *dimidsp, int *varidp);
EXTERNL int
NC4_def_var(int ncid, const char *name,
nc_type xtype, int ndims, const int *dimidsp, int *varidp);
EXTERNL int
NC4_inq_var_all(int ncid, int varid, char *name, nc_type *xtypep,
int *ndimsp, int *dimidsp, int *nattsp,
int *shufflep, int *deflatep, int *deflate_levelp,
int *fletcher32p, int *contiguousp, size_t *chunksizesp,
int *no_fill, void *fill_valuep, int *endiannessp,
unsigned int* idp, size_t* nparamsp, unsigned int* params
);
EXTERNL int
NC4_inq_var_all(int ncid, int varid, char *name, nc_type *xtypep,
int *ndimsp, int *dimidsp, int *nattsp,
int *shufflep, int *deflatep, int *deflate_levelp,
int *fletcher32p, int *contiguousp, size_t *chunksizesp,
int *no_fill, void *fill_valuep, int *endiannessp,
unsigned int* idp, size_t* nparamsp, unsigned int* params
);
EXTERNL int
NC4_inq_varid(int ncid, const char *name, int *varidp);
EXTERNL int
NC4_inq_varid(int ncid, const char *name, int *varidp);
EXTERNL int
NC4_rename_var(int ncid, int varid, const char *name);
EXTERNL int
NC4_rename_var(int ncid, int varid, const char *name);
EXTERNL int
NC4_put_vara(int ncid, int varid,
const size_t *start, const size_t *count,
const void *value, nc_type);
EXTERNL int
NC4_put_vara(int ncid, int varid,
const size_t *start, const size_t *count,
const void *value, nc_type);
EXTERNL int
NC4_get_vara(int ncid, int varid,
const size_t *start, const size_t *count,
void *value, nc_type);
EXTERNL int
NC4_get_vara(int ncid, int varid,
const size_t *start, const size_t *count,
void *value, nc_type);
extern int
NC4_put_vars(int ncid, int varid,
const size_t *start, const size_t *count, const ptrdiff_t* stride,
const void *value, nc_type);
extern int
NC4_put_vars(int ncid, int varid,
const size_t *start, const size_t *count, const ptrdiff_t* stride,
const void *value, nc_type);
extern int
NC4_get_vars(int ncid, int varid,
const size_t *start, const size_t *count, const ptrdiff_t* stride,
void *value, nc_type);
extern int
NC4_get_vars(int ncid, int varid,
const size_t *start, const size_t *count, const ptrdiff_t* stride,
void *value, nc_type);
/* End _var */
/* netCDF4 API only */
EXTERNL int
NC4_var_par_access(int, int, int);
EXTERNL int
NC4_var_par_access(int, int, int);
EXTERNL int
NC4_inq_ncid(int, const char *, int *);
EXTERNL int
NC4_inq_ncid(int, const char *, int *);
EXTERNL int
NC4_inq_grps(int, int *, int *);
EXTERNL int
NC4_inq_grps(int, int *, int *);
EXTERNL int
NC4_inq_grpname(int, char *);
EXTERNL int
NC4_inq_grpname(int, char *);
EXTERNL int
NC4_inq_grpname_full(int, size_t *, char *);
EXTERNL int
NC4_inq_grpname_full(int, size_t *, char *);
EXTERNL int
NC4_inq_grp_parent(int, int *);
EXTERNL int
NC4_inq_grp_parent(int, int *);
EXTERNL int
NC4_inq_grp_full_ncid(int, const char *, int *);
EXTERNL int
NC4_inq_grp_full_ncid(int, const char *, int *);
EXTERNL int
NC4_inq_varids(int, int * nvars, int *);
EXTERNL int
NC4_inq_varids(int, int * nvars, int *);
EXTERNL int
NC4_inq_dimids(int, int * ndims, int *, int);
EXTERNL int
NC4_inq_dimids(int, int * ndims, int *, int);
EXTERNL int
NC4_inq_typeids(int, int * ntypes, int *);
EXTERNL int
NC4_inq_typeids(int, int * ntypes, int *);
EXTERNL int
NC4_inq_type_equal(int, nc_type, int, nc_type, int *);
EXTERNL int
NC4_inq_type_equal(int, nc_type, int, nc_type, int *);
EXTERNL int
NC4_def_grp(int, const char *, int *);
EXTERNL int
NC4_def_grp(int, const char *, int *);
EXTERNL int
NC4_rename_grp(int, const char *);
EXTERNL int
NC4_rename_grp(int, const char *);
EXTERNL int
NC4_inq_user_type(int, nc_type, char *, size_t *, nc_type *,
size_t *, int *);
EXTERNL int
NC4_inq_user_type(int, nc_type, char *, size_t *, nc_type *,
size_t *, int *);
EXTERNL int
NC4_def_compound(int, size_t, const char *, nc_type *);
EXTERNL int
NC4_def_compound(int, size_t, const char *, nc_type *);
EXTERNL int
NC4_insert_compound(int, nc_type, const char *, size_t, nc_type);
EXTERNL int
NC4_insert_compound(int, nc_type, const char *, size_t, nc_type);
EXTERNL int
NC4_insert_array_compound(int, nc_type, const char *, size_t,
nc_type, int, const int *);
EXTERNL int
NC4_insert_array_compound(int, nc_type, const char *, size_t,
nc_type, int, const int *);
EXTERNL int
NC4_inq_typeid(int, const char *, nc_type *);
EXTERNL int
NC4_inq_typeid(int, const char *, nc_type *);
EXTERNL int
NC4_inq_compound_field(int, nc_type, int, char *, size_t *,
nc_type *, int *, int *);
EXTERNL int
NC4_inq_compound_field(int, nc_type, int, char *, size_t *,
nc_type *, int *, int *);
EXTERNL int
NC4_inq_compound_fieldindex(int, nc_type, const char *, int *);
EXTERNL int
NC4_inq_compound_fieldindex(int, nc_type, const char *, int *);
EXTERNL int
NC4_def_vlen(int, const char *, nc_type base_typeid, nc_type *);
EXTERNL int
NC4_def_vlen(int, const char *, nc_type base_typeid, nc_type *);
EXTERNL int
NC4_put_vlen_element(int, int, void *, size_t, const void *);
EXTERNL int
NC4_put_vlen_element(int, int, void *, size_t, const void *);
EXTERNL int
NC4_get_vlen_element(int, int, const void *, size_t *, void *);
EXTERNL int
NC4_get_vlen_element(int, int, const void *, size_t *, void *);
EXTERNL int
NC4_def_enum(int, nc_type, const char *, nc_type *);
EXTERNL int
NC4_def_enum(int, nc_type, const char *, nc_type *);
EXTERNL int
NC4_insert_enum(int, nc_type, const char *, const void *);
EXTERNL int
NC4_insert_enum(int, nc_type, const char *, const void *);
EXTERNL int
NC4_inq_enum_member(int, nc_type, int, char *, void *);
EXTERNL int
NC4_inq_enum_member(int, nc_type, int, char *, void *);
EXTERNL int
NC4_inq_enum_ident(int, nc_type, long long, char *);
EXTERNL int
NC4_inq_enum_ident(int, nc_type, long long, char *);
EXTERNL int
NC4_def_opaque(int, size_t, const char *, nc_type *);
EXTERNL int
NC4_def_opaque(int, size_t, const char *, nc_type *);
EXTERNL int
NC4_def_var_deflate(int, int, int, int, int);
EXTERNL int
NC4_def_var_deflate(int, int, int, int, int);
EXTERNL int
NC4_def_var_fletcher32(int, int, int);
EXTERNL int
NC4_def_var_fletcher32(int, int, int);
EXTERNL int
NC4_def_var_chunking(int, int, int, const size_t *);
EXTERNL int
NC4_def_var_chunking(int, int, int, const size_t *);
EXTERNL int
NC4_def_var_fill(int, int, int, const void *);
EXTERNL int
NC4_def_var_fill(int, int, int, const void *);
EXTERNL int
NC4_def_var_endian(int, int, int);
EXTERNL int
NC4_def_var_endian(int, int, int);
EXTERNL int
NC4_def_var_filter(int, int, unsigned int, size_t, const unsigned int*);
EXTERNL int
NC4_def_var_filter(int, int, unsigned int, size_t, const unsigned int*);
EXTERNL int
NC4_get_var_chunk_cache(int, int, size_t *, size_t *, float *);
EXTERNL int
NC4_get_var_chunk_cache(int, int, size_t *, size_t *, float *);
EXTERNL int
NC4_inq_unlimdims(int, int *, int *);
EXTERNL int
NC4_inq_unlimdims(int, int *, int *);
EXTERNL int
NC4_show_metadata(int);
EXTERNL int
NC4_show_metadata(int);
#if defined(__cplusplus)
}

366
include/nc4internal.h
View File

@ -6,7 +6,7 @@
* used to build and manipulate the netCDF metadata model.
*
* @author Ed Hartnett, Dennis Heimbigner, Ward Fisher
*/
*/
#ifndef _NC4INTERNAL_
#define _NC4INTERNAL_
@ -50,31 +50,31 @@ typedef enum {NCNAT, NCVAR, NCDIM, NCATT, NCTYP, NCFLD, NCGRP} NC_SORT;
/*
* limits of the external representation
*/
#define X_SCHAR_MIN (-128)
#define X_SCHAR_MAX 127
#define X_UCHAR_MAX 255U
#define X_SHORT_MIN (-32768)
#define X_SHRT_MIN X_SHORT_MIN /* alias compatible with limits.h */
#define X_SHORT_MAX 32767
#define X_SHRT_MAX X_SHORT_MAX /* alias compatible with limits.h */
#define X_USHORT_MAX 65535U
#define X_USHRT_MAX X_USHORT_MAX /* alias compatible with limits.h */
#define X_INT_MIN (-2147483647-1)
#define X_INT_MAX 2147483647
#define X_LONG_MIN X_INT_MIN
#define X_LONG_MAX X_INT_MAX
#define X_UINT_MAX 4294967295U
#define X_INT64_MIN (-9223372036854775807LL-1LL)
#define X_INT64_MAX 9223372036854775807LL
#define X_UINT64_MAX 18446744073709551615ULL
#define X_SCHAR_MIN (-128)
#define X_SCHAR_MAX 127
#define X_UCHAR_MAX 255U
#define X_SHORT_MIN (-32768)
#define X_SHRT_MIN X_SHORT_MIN /* alias compatible with limits.h */
#define X_SHORT_MAX 32767
#define X_SHRT_MAX X_SHORT_MAX /* alias compatible with limits.h */
#define X_USHORT_MAX 65535U
#define X_USHRT_MAX X_USHORT_MAX /* alias compatible with limits.h */
#define X_INT_MIN (-2147483647-1)
#define X_INT_MAX 2147483647
#define X_LONG_MIN X_INT_MIN
#define X_LONG_MAX X_INT_MAX
#define X_UINT_MAX 4294967295U
#define X_INT64_MIN (-9223372036854775807LL-1LL)
#define X_INT64_MAX 9223372036854775807LL
#define X_UINT64_MAX 18446744073709551615ULL
#ifdef WIN32 /* Windows, of course, has to be a *little* different. */
#define X_FLOAT_MAX 3.402823466e+38f
#define X_FLOAT_MAX 3.402823466e+38f
#else
#define X_FLOAT_MAX 3.40282347e+38f
#define X_FLOAT_MAX 3.40282347e+38f
#endif /* WIN32 */
#define X_FLOAT_MIN (-X_FLOAT_MAX)
#define X_DOUBLE_MAX 1.7976931348623157e+308
#define X_DOUBLE_MIN (-X_DOUBLE_MAX)
#define X_FLOAT_MIN (-X_FLOAT_MAX)
#define X_DOUBLE_MAX 1.7976931348623157e+308
#define X_DOUBLE_MIN (-X_DOUBLE_MAX)
/** This is the number of netCDF atomic types. */
#define NUM_ATOMIC_TYPES (NC_MAX_ATOMIC_TYPE + 1)
@ -91,15 +91,15 @@ struct NC_GRP_INFO;
struct NC_TYPE_INFO;
/*
Indexed Access to Meta-data objects:
Indexed Access to Meta-data objects:
See the document docs/indexing.dox for detailed information.
See the document docs/indexing.dox for detailed information.
Basically provide a common header and use NCindex instances
instead of linked lists.
Basically provide a common header and use NCindex instances
instead of linked lists.
WARNING: ALL OBJECTS THAT CAN BE INSERTED INTO AN NCindex
MUST HAVE AN INSTANCE of NC_OBJ AS THE FIRST FIELD.
WARNING: ALL OBJECTS THAT CAN BE INSERTED INTO AN NCindex
MUST HAVE AN INSTANCE of NC_OBJ AS THE FIRST FIELD.
*/
typedef struct NC_OBJ {
@ -112,181 +112,181 @@ typedef struct NC_OBJ {
/* This is a struct to handle the dim metadata. */
typedef struct NC_DIM_INFO
{
NC_OBJ hdr;
struct NC_GRP_INFO *container; /* containing group */
size_t len;
nc_bool_t unlimited; /* True if the dimension is unlimited */
nc_bool_t extended; /* True if the dimension needs to be extended */
nc_bool_t too_long; /* True if len is too big to fit in local size_t. */
void *format_dim_info; /* Pointer to format-specific dim info. */
struct NC_VAR_INFO *coord_var; /* The coord var, if it exists. */
NC_OBJ hdr;
struct NC_GRP_INFO *container; /* containing group */
size_t len;
nc_bool_t unlimited; /* True if the dimension is unlimited */
nc_bool_t extended; /* True if the dimension needs to be extended */
nc_bool_t too_long; /* True if len is too big to fit in local size_t. */
void *format_dim_info; /* Pointer to format-specific dim info. */
struct NC_VAR_INFO *coord_var; /* The coord var, if it exists. */
} NC_DIM_INFO_T;
typedef struct NC_ATT_INFO
{
NC_OBJ hdr;
struct NC_OBJ *container; /* containing group|var */
int len;
nc_bool_t dirty; /* True if attribute modified */
nc_bool_t created; /* True if attribute already created */
nc_type nc_typeid; /* netCDF type of attribute's data */
void *format_att_info;
void *data;
nc_vlen_t *vldata; /* only used for vlen */
char **stdata; /* only for string type. */
NC_OBJ hdr;
struct NC_OBJ *container; /* containing group|var */
int len;
nc_bool_t dirty; /* True if attribute modified */
nc_bool_t created; /* True if attribute already created */
nc_type nc_typeid; /* netCDF type of attribute's data */
void *format_att_info;
void *data;
nc_vlen_t *vldata; /* only used for vlen */
char **stdata; /* only for string type. */
} NC_ATT_INFO_T;
/* This is a struct to handle the var metadata. */
typedef struct NC_VAR_INFO
{
NC_OBJ hdr;
char *hdf5_name; /* used if different from name */
struct NC_GRP_INFO *container; /* containing group */
size_t ndims;
int *dimids;
NC_DIM_INFO_T **dim;
nc_bool_t is_new_var; /* True if variable is newly created */
nc_bool_t was_coord_var; /* True if variable was a coordinate var, but either the dim or var has been renamed */
nc_bool_t became_coord_var; /* True if variable _became_ a coordinate var, because either the dim or var has been renamed */
nc_bool_t fill_val_changed; /* True if variable's fill value changes after it has been created */
nc_bool_t attr_dirty; /* True if variable's attributes are dirty and should be rewritten */
nc_bool_t created; /* Variable has already been created (_not_ that it was just created) */
nc_bool_t written_to; /* True if variable has data written to it */
struct NC_TYPE_INFO *type_info;
int atts_read; /* If true, the atts have been read. */
nc_bool_t meta_read; /* True if this vars metadata has been completely read. */
nc_bool_t coords_read; /* True if this var has hidden coordinates att, and it has been read. */
NCindex *att; /* NCindex<NC_ATT_INFO_T*> */
nc_bool_t no_fill; /* True if no fill value is defined for var */
void *fill_value;
size_t *chunksizes;
nc_bool_t contiguous; /* True if variable is stored contiguously in HDF5 file */
int parallel_access; /* Type of parallel access for I/O on variable (collective or independent) */
nc_bool_t dimscale; /* True if var is a dimscale */
nc_bool_t *dimscale_attached; /* Array of flags that are true if dimscale is attached for that dim index */
nc_bool_t deflate; /* True if var has deflate filter applied */
int deflate_level;
nc_bool_t shuffle; /* True if var has shuffle filter applied */
nc_bool_t fletcher32; /* True if var has fletcher32 filter applied */
size_t chunk_cache_size, chunk_cache_nelems;
float chunk_cache_preemption;
void *format_var_info; /* Pointer to any binary format info. */
/* Stuff for arbitrary filters */
unsigned int filterid;
size_t nparams;
unsigned int *params;
NC_OBJ hdr;
char *hdf5_name; /* used if different from name */
struct NC_GRP_INFO *container; /* containing group */
size_t ndims;
int *dimids;
NC_DIM_INFO_T **dim;
nc_bool_t is_new_var; /* True if variable is newly created */
nc_bool_t was_coord_var; /* True if variable was a coordinate var, but either the dim or var has been renamed */
nc_bool_t became_coord_var; /* True if variable _became_ a coordinate var, because either the dim or var has been renamed */
nc_bool_t fill_val_changed; /* True if variable's fill value changes after it has been created */
nc_bool_t attr_dirty; /* True if variable's attributes are dirty and should be rewritten */
nc_bool_t created; /* Variable has already been created (_not_ that it was just created) */
nc_bool_t written_to; /* True if variable has data written to it */
struct NC_TYPE_INFO *type_info;
int atts_read; /* If true, the atts have been read. */
nc_bool_t meta_read; /* True if this vars metadata has been completely read. */
nc_bool_t coords_read; /* True if this var has hidden coordinates att, and it has been read. */
NCindex *att; /* NCindex<NC_ATT_INFO_T*> */
nc_bool_t no_fill; /* True if no fill value is defined for var */
void *fill_value;
size_t *chunksizes;
nc_bool_t contiguous; /* True if variable is stored contiguously in HDF5 file */
int parallel_access; /* Type of parallel access for I/O on variable (collective or independent) */
nc_bool_t dimscale; /* True if var is a dimscale */
nc_bool_t *dimscale_attached; /* Array of flags that are true if dimscale is attached for that dim index */
nc_bool_t deflate; /* True if var has deflate filter applied */
int deflate_level;
nc_bool_t shuffle; /* True if var has shuffle filter applied */
nc_bool_t fletcher32; /* True if var has fletcher32 filter applied */
size_t chunk_cache_size, chunk_cache_nelems;
float chunk_cache_preemption;
void *format_var_info; /* Pointer to any binary format info. */
/* Stuff for arbitrary filters */
unsigned int filterid;
size_t nparams;
unsigned int *params;
} NC_VAR_INFO_T;
typedef struct NC_FIELD_INFO
{
NC_OBJ hdr;
nc_type nc_typeid;
size_t offset;
int ndims;
int *dim_size;
void *format_field_info; /* Pointer to any binary format info for field. */
NC_OBJ hdr;
nc_type nc_typeid;
size_t offset;
int ndims;
int *dim_size;
void *format_field_info; /* Pointer to any binary format info for field. */
} NC_FIELD_INFO_T;
typedef struct NC_ENUM_MEMBER_INFO
{
char *name;
void *value;
char *name;
void *value;
} NC_ENUM_MEMBER_INFO_T;
typedef struct NC_TYPE_INFO
{
NC_OBJ hdr; /* NetCDF type ID. */
struct NC_GRP_INFO *container; /* Containing group */
unsigned rc; /* Ref. count of objects using this type */
int endianness; /* What endianness for the type? */
size_t size; /* Size of the type in memory, in bytes */
nc_bool_t committed; /* True when datatype is committed in the file */
nc_type nc_type_class; /* NC_VLEN, NC_COMPOUND, NC_OPAQUE,
* NC_ENUM, NC_INT, NC_FLOAT, or
* NC_STRING. */
void *format_type_info; /* HDF5-specific type info. */
NC_OBJ hdr; /* NetCDF type ID. */
struct NC_GRP_INFO *container; /* Containing group */
unsigned rc; /* Ref. count of objects using this type */
int endianness; /* What endianness for the type? */
size_t size; /* Size of the type in memory, in bytes */
nc_bool_t committed; /* True when datatype is committed in the file */
nc_type nc_type_class; /* NC_VLEN, NC_COMPOUND, NC_OPAQUE,
* NC_ENUM, NC_INT, NC_FLOAT, or
* NC_STRING. */
void *format_type_info; /* HDF5-specific type info. */
/* Information for each type or class */
union {
struct {
NClist* enum_member; /* <! NClist<NC_ENUM_MEMBER_INFO_T*> */
nc_type base_nc_typeid;
} e; /* Enum */
struct Fields {
NClist* field; /* <! NClist<NC_FIELD_INFO_T*> */
} c; /* Compound */
struct {
nc_type base_nc_typeid;
} v; /* Variable-length */
} u; /* Union of structs, for each type/class */
/* Information for each type or class */
union {
struct {
NClist* enum_member; /* <! NClist<NC_ENUM_MEMBER_INFO_T*> */
nc_type base_nc_typeid;
} e; /* Enum */
struct Fields {
NClist* field; /* <! NClist<NC_FIELD_INFO_T*> */
} c; /* Compound */
struct {
nc_type base_nc_typeid;
} v; /* Variable-length */
} u; /* Union of structs, for each type/class */
} NC_TYPE_INFO_T;
/* This holds information for one group. Groups reproduce with
* parthenogenesis. */
typedef struct NC_GRP_INFO
{
NC_OBJ hdr;
void *format_grp_info;
struct NC_FILE_INFO *nc4_info;
struct NC_GRP_INFO *parent;
int atts_read; /* True if atts have been read for this group. */
NCindex* children; /* NCindex<struct NC_GRP_INFO*> */
NCindex* dim; /* NCindex<NC_DIM_INFO_T> * */
NCindex* att; /* NCindex<NC_ATT_INFO_T> * */
NCindex* type; /* NCindex<NC_TYPE_INFO_T> * */
/* Note that this is the list of vars with position == varid */
NCindex* vars; /* NCindex<NC_VAR_INFO_T> * */
NC_OBJ hdr;
void *format_grp_info;
struct NC_FILE_INFO *nc4_info;
struct NC_GRP_INFO *parent;
int atts_read; /* True if atts have been read for this group. */
NCindex* children; /* NCindex<struct NC_GRP_INFO*> */
NCindex* dim; /* NCindex<NC_DIM_INFO_T> * */
NCindex* att; /* NCindex<NC_ATT_INFO_T> * */
NCindex* type; /* NCindex<NC_TYPE_INFO_T> * */
/* Note that this is the list of vars with position == varid */
NCindex* vars; /* NCindex<NC_VAR_INFO_T> * */
} NC_GRP_INFO_T;
/* These constants apply to the cmode parameter in the
* HDF5_FILE_INFO_T defined below. */
#define NC_CREAT 2 /* in create phase, cleared by ncendef */
#define NC_INDEF 8 /* in define mode, cleared by ncendef */
#define NC_NSYNC 0x10 /* synchronise numrecs on change */
#define NC_HSYNC 0x20 /* synchronise whole header on change */
#define NC_NDIRTY 0x40 /* numrecs has changed */
#define NC_CREAT 2 /* in create phase, cleared by ncendef */
#define NC_INDEF 8 /* in define mode, cleared by ncendef */
#define NC_NSYNC 0x10 /* synchronise numrecs on change */
#define NC_HSYNC 0x20 /* synchronise whole header on change */
#define NC_NDIRTY 0x40 /* numrecs has changed */
#define NC_HDIRTY 0x80 /* header info has changed */
/* This is the metadata we need to keep track of for each
netcdf-4/HDF5 file. */
typedef struct NC_FILE_INFO
{
NC* controller;
NC* controller;
#ifdef USE_PARALLEL4
MPI_Comm comm; /* Copy of MPI Communicator used to open the file */
MPI_Info info; /* Copy of MPI Information Object used to open the file */
MPI_Comm comm; /* Copy of MPI Communicator used to open the file */
MPI_Info info; /* Copy of MPI Information Object used to open the file */
#endif
int flags;
int cmode;
nc_bool_t parallel; /* True if file is open for parallel access */
nc_bool_t redef; /* True if redefining an existing file */
int fill_mode; /* Fill mode for vars - Unused internally currently */
nc_bool_t no_write; /* true if nc_open has mode NC_NOWRITE. */
NC_GRP_INFO_T *root_grp;
/* Track indices to assign to grps, types, and dims */
short next_nc_grpid;
int next_typeid;
int next_dimid;
/* Provide convenience vectors indexed by the object id.
This allows for direct conversion of e.g. an nc_type to
the corresponding NC_TYPE_INFO_T object.
*/
NClist* alldims;
NClist* alltypes;
NClist* allgroups; /* including root group */
void *format_file_info;
struct NCPROVENANCE* provenance;
struct NC4_Memio {
NC_memio memio; /* What we sent to image_init and what comes back*/
int locked; /* do not copy and do not free */
int persist; /* Should file be persisted out on close? */
int inmemory; /* NC_INMEMORY flag was set */
int diskless; /* NC_DISKLESS flag was set => inmemory */
int created; /* 1 => create, 0 => open */
unsigned int imageflags; /* for H5LTopen_file_image */
size_t initialsize;
void* udata; /* extra memory allocated in NC4_image_init */
} mem;
int flags;
int cmode;
nc_bool_t parallel; /* True if file is open for parallel access */
nc_bool_t redef; /* True if redefining an existing file */
int fill_mode; /* Fill mode for vars - Unused internally currently */
nc_bool_t no_write; /* true if nc_open has mode NC_NOWRITE. */
NC_GRP_INFO_T *root_grp;
/* Track indices to assign to grps, types, and dims */
short next_nc_grpid;
int next_typeid;
int next_dimid;
/* Provide convenience vectors indexed by the object id.
This allows for direct conversion of e.g. an nc_type to
the corresponding NC_TYPE_INFO_T object.
*/
NClist* alldims;
NClist* alltypes;
NClist* allgroups; /* including root group */
void *format_file_info;
struct NCPROVENANCE* provenance;
struct NC4_Memio {
NC_memio memio; /* What we sent to image_init and what comes back*/
int locked; /* do not copy and do not free */
int persist; /* Should file be persisted out on close? */
int inmemory; /* NC_INMEMORY flag was set */
int diskless; /* NC_DISKLESS flag was set => inmemory */
int created; /* 1 => create, 0 => open */
unsigned int imageflags; /* for H5LTopen_file_image */
size_t initialsize;
void* udata; /* extra memory allocated in NC4_image_init */
} mem;
} NC_FILE_INFO_T;
/* Variable Length Datatype struct in memory. Must be identical to
@ -303,7 +303,7 @@ extern char* nc4_atomic_name[NC_MAX_ATOMIC_TYPE+1];
int nc4_get_typelen_mem(NC_FILE_INFO_T *h5, nc_type xtype, size_t *len);
int nc4_convert_type(const void *src, void *dest, const nc_type src_type,
const nc_type dest_type, const size_t len, int *range_error,
const void *fill_value, int strict_nc3);
const void *fill_value, int strict_nc3);
/* These functions do HDF5 things. */
int nc4_reopen_dataset(NC_GRP_INFO_T *grp, NC_VAR_INFO_T *var);
@ -323,7 +323,7 @@ NC_TYPE_INFO_T *nc4_rec_find_named_type(NC_GRP_INFO_T *start_grp, char *name);
NC_TYPE_INFO_T *nc4_rec_find_equal_type(NC_GRP_INFO_T *start_grp, int ncid1,
NC_TYPE_INFO_T *type);
int nc4_find_nc_att(int ncid, int varid, const char *name, int attnum,
NC_ATT_INFO_T **att);
NC_ATT_INFO_T **att);
int nc4_find_grp_h5_var(int ncid, int varid, NC_FILE_INFO_T **h5,
NC_GRP_INFO_T **grp, NC_VAR_INFO_T **var);
int nc4_find_grp_att(NC_GRP_INFO_T *grp, int varid, const char *name,
@ -353,7 +353,7 @@ int nc4_type_list_add(NC_GRP_INFO_T *grp, size_t size, const char *name,
int nc4_type_list_del(NC_GRP_INFO_T *grp, NC_TYPE_INFO_T *type);
int nc4_type_free(NC_TYPE_INFO_T *type);
int nc4_field_list_add(NC_TYPE_INFO_T* parent, const char *name,
size_t offset, nc_type xtype, int ndims,
size_t offset, nc_type xtype, int ndims,
const int *dim_sizesp);
int nc4_att_list_add(NCindex *list, const char *name, NC_ATT_INFO_T **att);
int nc4_att_list_del(NCindex *list, NC_ATT_INFO_T *att);
@ -425,12 +425,12 @@ extern const NC_reservedatt* NC_findreserved(const char* name);
/**************************************************/
/**
For netcdf4 files, capture state information about the following:
1. Global: netcdf library version
2. Global: hdf5 library version
3. Per file: superblock version
4. Per File: was it created by netcdf-4?
5. Per file: _NCProperties attribute
For netcdf4 files, capture state information about the following:
1. Global: netcdf library version
2. Global: hdf5 library version
3. Per file: superblock version
4. Per File: was it created by netcdf-4?
5. Per file: _NCProperties attribute
*/
/* Most of this needs to be moved to hdf5internal.h */
@ -453,22 +453,22 @@ For netcdf4 files, capture state information about the following:
struct NCPROVENANCE {
int superblockversion;
struct NCPROPINFO {
int version; /* 0 => not defined */
struct NCPROPINFO {
int version; /* 0 => not defined */
/* Following is filled from NCPROPS attribute or from global version */
/* Version 1 format is:
"netcdflibversion=<version|hdf5libversion=<version>"
Version 2 format is:
"<mainbuildlib>=<version|<supportlib1>=<version>...|<other>=..."
*/
/* The _NCProperties values are stored as an arbitrary
/* Version 1 format is:
"netcdflibversion=<version|hdf5libversion=<version>"
Version 2 format is:
"<mainbuildlib>=<version|<supportlib1>=<version>...|<other>=..."
*/
/* The _NCProperties values are stored as an arbitrary
set of (key,value) pairs */
/* It is assumed that the first entry is the primary library
/* It is assumed that the first entry is the primary library
used to build the file, and it is followed by other libraries
used in the build, and finally an arbitrary list of other
(key,value) pairs. */
NClist* properties;
} propattr;
} propattr;
};
/* Provenance Initialization */

2
include/nc_tests.h
View File

@ -7,7 +7,7 @@
* nc_test4 directories.
*
* @author Ed Hartnett, Denis Heimbigner, Ward Fisher
*/
*/
#ifndef _NC_TESTS_H
#define _NC_TESTS_H

10
include/ncdimscale.h
View File

@ -6,7 +6,7 @@
* also some h5_test tests.
*
* @author Ed Hartnett
*/
*/
#ifndef _NCDIMSCALE_H_
#define _NCDIMSCALE_H_
@ -15,10 +15,10 @@
/* This is used to uniquely identify datasets, so we can keep track of
* dimscales. */
typedef struct hdf5_objid
typedef struct hdf5_objid
{
unsigned long fileno[2]; /* file number */
haddr_t objno[2]; /* object number */
} HDF5_OBJID_T;
unsigned long fileno[2]; /* file number */
haddr_t objno[2]; /* object number */
} HDF5_OBJID_T;
#endif

28
include/netcdf_par.h
View File

@ -25,26 +25,26 @@ extern "C" {
#define NC_COLLECTIVE 1
/* Create a file and enable parallel I/O. */
extern int
nc_create_par(const char *path, int cmode, MPI_Comm comm, MPI_Info info,
int *ncidp);
extern int
nc_create_par(const char *path, int cmode, MPI_Comm comm, MPI_Info info,
int *ncidp);
/* Open a file and enable parallel I/O. */
extern int
nc_open_par(const char *path, int mode, MPI_Comm comm, MPI_Info info,
int *ncidp);
extern int
nc_open_par(const char *path, int mode, MPI_Comm comm, MPI_Info info,
int *ncidp);
/* Change a variable from independent (the default) to collective
* access. */
extern int
nc_var_par_access(int ncid, int varid, int par_access);
extern int
nc_var_par_access(int ncid, int varid, int par_access);
extern int
nc_create_par_fortran(const char *path, int cmode, int comm,
int info, int *ncidp);
extern int
nc_open_par_fortran(const char *path, int mode, int comm,
int info, int *ncidp);
extern int
nc_create_par_fortran(const char *path, int cmode, int comm,
int info, int *ncidp);
extern int
nc_open_par_fortran(const char *path, int mode, int comm,
int info, int *ncidp);
#if defined(__cplusplus)
}