netcdf-c/libdap2/dapdump.c

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/*********************************************************************
* Copyright 1993, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*********************************************************************/
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#include "config.h"
#ifdef USE_PARALLEL
#include "netcdf_par.h"
#endif
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
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#include "dapincludes.h"
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#include "dapdump.h"
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#include "dceconstraints.h"
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#define CHECK(n) if((n) != NC_NOERR) {return (n);} else {}
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static void dumptreer(CDFnode* root, NCbytes* buf, int indent, int visible);
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int
dumpmetadata(int ncid, NChdr** hdrp)
{
int stat,i,j,k;
NChdr* hdr = (NChdr*)calloc(1,sizeof(NChdr));
MEMCHECK(hdr,NC_ENOMEM);
hdr->ncid = ncid;
hdr->content = ncbytesnew();
if(hdrp) *hdrp = hdr;
stat = nc_inq(hdr->ncid,
&hdr->ndims,
&hdr->nvars,
&hdr->ngatts,
&hdr->unlimid);
CHECK(stat);
if(ncdap3debug > 0) {
fprintf(stdout,"ncid=%d ngatts=%d ndims=%d nvars=%d unlimid=%d\n",
hdr->ncid,hdr->ngatts,hdr->ndims,hdr->nvars,hdr->unlimid);
}
hdr->gatts = (NCattribute*)calloc(1,hdr->ngatts*sizeof(NCattribute));
MEMCHECK(hdr->gatts,NC_ENOMEM);
if(hdr->ngatts > 0)
fprintf(stdout,"global attributes:\n");
for(i=0;i<hdr->ngatts;i++) {
NCattribute* att = &hdr->gatts[i];
char attname[NC_MAX_NAME];
nc_type nctype;
size_t typesize;
size_t nvalues;
stat = nc_inq_attname(hdr->ncid,NC_GLOBAL,i,attname);
CHECK(stat);
att->name = nulldup(attname);
stat = nc_inq_att(hdr->ncid,NC_GLOBAL,att->name,&nctype,&nvalues);
CHECK(stat);
att->etype = nctypetodap(nctype);
typesize = nctypesizeof(att->etype);
fprintf(stdout,"\t[%d]: name=%s type=%s values(%lu)=",
i,att->name,nctypetostring(octypetonc(att->etype)),
(unsigned long)nvalues);
if(nctype == NC_CHAR) {
size_t len = typesize*nvalues;
char* values = (char*)malloc(len+1);/* for null terminate*/
MEMCHECK(values,NC_ENOMEM);
stat = nc_get_att(hdr->ncid,NC_GLOBAL,att->name,values);
CHECK(stat);
values[len] = '\0';
fprintf(stdout," '%s'",values);
} else {
size_t len = typesize*nvalues;
char* values = (char*)malloc(len);
MEMCHECK(values,NC_ENOMEM);
stat = nc_get_att(hdr->ncid,NC_GLOBAL,att->name,values);
CHECK(stat);
for(k=0;k<nvalues;k++) {
fprintf(stdout," ");
dumpdata1(octypetonc(att->etype),k,values);
}
}
fprintf(stdout,"\n");
}
hdr->dims = (Dim*)malloc(hdr->ndims*sizeof(Dim));
MEMCHECK(hdr->dims,NC_ENOMEM);
for(i=0;i<hdr->ndims;i++) {
hdr->dims[i].dimid = i;
stat = nc_inq_dim(hdr->ncid,
hdr->dims[i].dimid,
hdr->dims[i].name,
&hdr->dims[i].size);
CHECK(stat);
fprintf(stdout,"dim[%d]: name=%s size=%lu\n",
i,hdr->dims[i].name,(unsigned long)hdr->dims[i].size);
}
hdr->vars = (Var*)malloc(hdr->nvars*sizeof(Var));
MEMCHECK(hdr->vars,NC_ENOMEM);
for(i=0;i<hdr->nvars;i++) {
Var* var = &hdr->vars[i];
nc_type nctype;
var->varid = i;
stat = nc_inq_var(hdr->ncid,
var->varid,
var->name,
&nctype,
&var->ndims,
var->dimids,
&var->natts);
CHECK(stat);
var->nctype = (nctype);
fprintf(stdout,"var[%d]: name=%s type=%s |dims|=%d",
i,
var->name,
nctypetostring(var->nctype),
var->ndims);
fprintf(stdout," dims={");
for(j=0;j<var->ndims;j++) {
fprintf(stdout," %d",var->dimids[j]);
}
fprintf(stdout,"}\n");
var->atts = (NCattribute*)malloc(var->natts*sizeof(NCattribute));
MEMCHECK(var->atts,NC_ENOMEM);
for(j=0;j<var->natts;j++) {
NCattribute* att = &var->atts[j];
char attname[NC_MAX_NAME];
size_t typesize;
char* values;
nc_type nctype;
size_t nvalues;
stat = nc_inq_attname(hdr->ncid,var->varid,j,attname);
CHECK(stat);
att->name = nulldup(attname);
stat = nc_inq_att(hdr->ncid,var->varid,att->name,&nctype,&nvalues);
CHECK(stat);
att->etype = nctypetodap(nctype);
typesize = nctypesizeof(att->etype);
values = (char*)malloc(typesize*nvalues);
MEMCHECK(values,NC_ENOMEM);
stat = nc_get_att(hdr->ncid,var->varid,att->name,values);
CHECK(stat);
fprintf(stdout,"\tattr[%d]: name=%s type=%s values(%lu)=",
j,att->name,nctypetostring(octypetonc(att->etype)),(unsigned long)nvalues);
for(k=0;k<nvalues;k++) {
fprintf(stdout," ");
dumpdata1(octypetonc(att->etype),k,values);
}
fprintf(stdout,"\n");
}
}
fflush(stdout);
return NC_NOERR;
}
void
dumpdata1(nc_type nctype, size_t index, char* data)
{
switch (nctype) {
case NC_CHAR:
fprintf(stdout,"'%c' %hhd",data[index],data[index]);
break;
case NC_BYTE:
fprintf(stdout,"%hhdB",((signed char*)data)[index]);
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break;
case NC_UBYTE:
fprintf(stdout,"%hhuB",((unsigned char*)data)[index]);
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break;
case NC_SHORT:
fprintf(stdout,"%hdS",((short*)data)[index]);
break;
case NC_USHORT:
fprintf(stdout,"%hdUS",((unsigned short*)data)[index]);
break;
case NC_INT:
fprintf(stdout,"%d",((int*)data)[index]);
break;
case NC_UINT:
fprintf(stdout,"%uU",((unsigned int*)data)[index]);
break;
case NC_FLOAT:
fprintf(stdout,"%#gF",((float*)data)[index]);
break;
case NC_DOUBLE:
fprintf(stdout,"%#gD",((double*)data)[index]);
break;
case NC_STRING:
fprintf(stdout,"\"%s\"",((char**)data)[index]);
break;
default:
fprintf(stdout,"Unknown type: %i",nctype);
break;
}
fflush(stdout);
}
/* Following should be kept consistent with
the makeXXXstring3 routines in constraints3.c
*/
/* Convert an NCprojection instance into a string
that can be used with the url
*/
char*
dumpprojections(NClist* projections)
{
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char* tmp;
int v = dceverbose;
dceverbose = 1;
tmp = dcelisttostring(projections,",");
dceverbose = v;
return tmp;
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}
char*
dumpprojection(DCEprojection* proj)
{
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char* tmp;
int v = dceverbose;
dceverbose = 1;
tmp = dcetostring((DCEnode*)proj);
dceverbose = v;
return tmp;
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}
char*
dumpselections(NClist* selections)
{
return dcelisttostring(selections,"&");
}
char*
dumpselection(DCEselection* sel)
{
return dcetostring((DCEnode*)sel);
}
char*
dumpconstraint(DCEconstraint* con)
{
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char* tmp;
int v = dceverbose;
dceverbose = 1;
tmp = dcetostring((DCEnode*)con);
dceverbose = v;
return tmp;
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}
char*
dumpsegments(NClist* segments)
{
return dcelisttostring(segments,".");
}
char*
dumppath(CDFnode* leaf)
{
NClist* path = nclistnew();
NCbytes* buf = ncbytesnew();
char* result;
int i;
if(leaf == NULL) return nulldup("");
collectnodepath(leaf,path,!WITHDATASET);
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for(i=0;i<nclistlength(path);i++) {
CDFnode* node = (CDFnode*)nclistget(path,i);
if(i > 0) ncbytescat(buf,".");
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ncbytescat(buf,node->ncbasename);
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}
result = ncbytesdup(buf);
ncbytesfree(buf);
nclistfree(path);
return result;
}
static void
dumpindent(int indent, NCbytes* buf)
{
static char* indentstr = " ";
int i;
for(i=0;i<indent;i++) ncbytescat(buf,indentstr);
}
static void
dumptreer1(CDFnode* root, NCbytes* buf, int indent, char* tag, int visible)
{
int i;
dumpindent(indent,buf);
ncbytescat(buf,tag);
ncbytescat(buf," {\n");
for(i=0;i<nclistlength(root->subnodes);i++) {
CDFnode* node = (CDFnode*)nclistget(root->subnodes,i);
if(visible && root->invisible) continue;
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if(root->nctype == NC_Grid) {
if(i==0) {
dumpindent(indent+1,buf);
ncbytescat(buf,"Array:\n");
} else if(i==1) {
dumpindent(indent+1,buf);
ncbytescat(buf,"Maps:\n");
}
dumptreer(node,buf,indent+2,visible);
} else {
dumptreer(node,buf,indent+1,visible);
}
}
dumpindent(indent,buf);
ncbytescat(buf,"} ");
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ncbytescat(buf,(root->ncbasename?root->ncbasename:"<?>"));
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}
static void
dumptreer(CDFnode* root, NCbytes* buf, int indent, int visible)
{
int i;
char* primtype = NULL;
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NClist* dimset = NULL;
if(visible && root->invisible) return;
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switch (root->nctype) {
case NC_Dataset:
dumptreer1(root,buf,indent,"Dataset",visible);
break;
case NC_Sequence:
dumptreer1(root,buf,indent,"Sequence",visible);
break;
case NC_Structure:
dumptreer1(root,buf,indent,"Structure",visible);
break;
case NC_Grid:
dumptreer1(root,buf,indent,"Grid",visible);
break;
case NC_Atomic:
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switch (root->etype) {
case NC_BYTE: primtype = "byte"; break;
case NC_CHAR: primtype = "char"; break;
case NC_SHORT: primtype = "short"; break;
case NC_INT: primtype = "int"; break;
case NC_FLOAT: primtype = "float"; break;
case NC_DOUBLE: primtype = "double"; break;
case NC_UBYTE: primtype = "ubyte"; break;
case NC_USHORT: primtype = "ushort"; break;
case NC_UINT: primtype = "uint"; break;
case NC_INT64: primtype = "int64"; break;
case NC_UINT64: primtype = "uint64"; break;
case NC_STRING: primtype = "string"; break;
default: break;
}
dumpindent(indent,buf);
ncbytescat(buf,primtype);
ncbytescat(buf," ");
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ncbytescat(buf,(root->ncbasename?root->ncbasename:"<?>"));
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break;
default: break;
}
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if(nclistlength(root->array.dimsetplus) > 0) dimset = root->array.dimsetplus;
else if(nclistlength(root->array.dimset0) > 0) dimset = root->array.dimset0;
if(dimset != NULL) {
for(i=0;i<nclistlength(dimset);i++) {
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
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char tmp[64];
ncbytescat(buf,"[");
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if(dim->ncbasename != NULL) {
ncbytescat(buf,dim->ncbasename);
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ncbytescat(buf,"=");
}
snprintf(tmp,sizeof(tmp),"%lu",(unsigned long)dim->dim.declsize);
ncbytescat(buf,tmp);
ncbytescat(buf,"]");
}
}
ncbytescat(buf,";\n");
}
char*
dumptree(CDFnode* root)
{
NCbytes* buf = ncbytesnew();
char* result;
dumptreer(root,buf,0,0);
result = ncbytesdup(buf);
ncbytesfree(buf);
return result;
}
char*
dumpvisible(CDFnode* root)
{
NCbytes* buf = ncbytesnew();
char* result;
dumptreer(root,buf,0,1);
result = ncbytesdup(buf);
ncbytesfree(buf);
return result;
}
/* Provide detailed data on a CDFnode */
char*
dumpnode(CDFnode* node)
{
NCbytes* buf = ncbytesnew();
char* result;
int i;
char* nctype = NULL;
char* primtype = NULL;
char tmp[1024];
switch (node->nctype) {
case NC_Dataset: nctype = "Dataset"; break;
case NC_Sequence: nctype = "Sequence"; break;
case NC_Structure: nctype = "Structure"; break;
case NC_Grid: nctype = "Grid"; break;
case NC_Atomic:
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switch (node->etype) {
case NC_BYTE: primtype = "byte"; break;
case NC_CHAR: primtype = "char"; break;
case NC_SHORT: primtype = "short"; break;
case NC_INT: primtype = "int"; break;
case NC_FLOAT: primtype = "float"; break;
case NC_DOUBLE: primtype = "double"; break;
case NC_UBYTE: primtype = "ubyte"; break;
case NC_USHORT: primtype = "ushort"; break;
case NC_UINT: primtype = "uint"; break;
case NC_INT64: primtype = "int64"; break;
case NC_UINT64: primtype = "uint64"; break;
case NC_STRING: primtype = "string"; break;
default: break;
}
break;
default: break;
}
snprintf(tmp,sizeof(tmp),"%s %s {\n",
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(nctype?nctype:primtype),node->ocname);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"ocnode=%lx\n",(unsigned long)node->ocnode);
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ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"container=%s\n",
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(node->container?node->container->ocname:"null"));
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ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"root=%s\n",
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(node->root?node->root->ocname:"null"));
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ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"ncbasename=%s\n",node->ncbasename);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"ncfullname=%s\n",node->ncfullname);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"|subnodes|=%u\n",(unsigned)nclistlength(node->subnodes));
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ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"externaltype=%d\n",node->externaltype);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"ncid=%d\n",node->ncid);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"maxstringlength=%ld\n",node->maxstringlength);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"sequencelimit=%ld\n",node->sequencelimit);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"usesequence=%d\n",node->usesequence);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"elided=%d\n",node->elided);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"invisible=%d\n",node->invisible);
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ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"attachment=%s\n",
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(node->attachment?node->attachment->ocname:"null"));
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ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp),"rank=%u\n",(unsigned)nclistlength(node->array.dimset0));
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ncbytescat(buf,tmp);
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for(i=0;i<nclistlength(node->array.dimset0);i++) {
CDFnode* dim = (CDFnode*)nclistget(node->array.dimset0,i);
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snprintf(tmp,sizeof(tmp),"dims[%d]={\n",i);
ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp)," ocname=%s\n",dim->ocname);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp)," ncbasename=%s\n",dim->ncbasename);
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ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp)," dimflags=%u\n",
(unsigned int)dim->dim.dimflags);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp)," declsize=%lu\n",
(unsigned long)dim->dim.declsize);
ncbytescat(buf,tmp);
snprintf(tmp,sizeof(tmp)," }\n");
ncbytescat(buf,tmp);
}
result = ncbytesdup(buf);
ncbytesfree(buf);
return result;
}
char*
dumpalign(NCalignment* ncalign)
{
char* result;
char tmp[1024];
if(ncalign == NULL)
result = nulldup("NCalignment{size=-- alignment=-- offset=--}");
else {
snprintf(tmp,sizeof(tmp),"NCalignment{size=%lu alignment=%lu offset=%lu}",
ncalign->size,ncalign->alignment,ncalign->offset);
result = nulldup(tmp);
}
return result;
}
char*
dumpcachenode(NCcachenode* node)
{
char* result = NULL;
char tmp[8192];
int i;
NCbytes* buf;
if(node == NULL) return strdup("cachenode{null}");
buf = ncbytesnew();
result = dcebuildconstraintstring(node->constraint);
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snprintf(tmp,sizeof(tmp),"cachenode%s(%lx){size=%lu; constraint=%s; vars=",
node->isprefetch?"*":"",
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(unsigned long)node,
(unsigned long)node->xdrsize,
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result);
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ncbytescat(buf,tmp);
if(nclistlength(node->vars)==0)
ncbytescat(buf,"null");
else for(i=0;i<nclistlength(node->vars);i++) {
CDFnode* var = (CDFnode*)nclistget(node->vars,i);
if(i > 0) ncbytescat(buf,",");
ncbytescat(buf,makecdfpathstring(var,"."));
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}
ncbytescat(buf,"}");
result = ncbytesdup(buf);
ncbytesfree(buf);
return result;
}
char*
dumpcache(NCcache* cache)
{
char* result = NULL;
char tmp[8192];
int i;
NCbytes* buf;
if(cache == NULL) return strdup("cache{null}");
buf = ncbytesnew();
snprintf(tmp,sizeof(tmp),"cache{limit=%lu; size=%lu;\n",
(unsigned long)cache->cachelimit,
(unsigned long)cache->cachesize);
ncbytescat(buf,tmp);
if(cache->prefetch) {
ncbytescat(buf,"\tprefetch=");
ncbytescat(buf,dumpcachenode(cache->prefetch));
ncbytescat(buf,"\n");
}
if(nclistlength(cache->nodes) > 0) {
for(i=0;i<nclistlength(cache->nodes);i++) {
NCcachenode* node = (NCcachenode*)nclistget(cache->nodes,i);
ncbytescat(buf,"\t");
ncbytescat(buf,dumpcachenode(node));
ncbytescat(buf,"\n");
}
}
ncbytescat(buf,"}");
result = ncbytesdup(buf);
ncbytesfree(buf);
return result;
}
/* This should be consistent with makeslicestring3 in constraints3.c */
char*
dumpslice(DCEslice* slice)
{
char buf[8192];
char tmp[8192];
buf[0] = '\0';
if(slice->last > slice->declsize && slice->declsize > 0)
slice->last = slice->declsize - 1;
if(slice->count == 1) {
snprintf(tmp,sizeof(tmp),"[%lu]",
(unsigned long)slice->first);
} else if(slice->stride == 1) {
snprintf(tmp,sizeof(tmp),"[%lu:%lu]",
(unsigned long)slice->first,
(unsigned long)slice->last);
} else {
snprintf(tmp,sizeof(tmp),"[%lu:%lu:%lu]",
(unsigned long)slice->first,
(unsigned long)slice->stride,
(unsigned long)slice->last);
}
strlcat(buf,tmp,sizeof(buf));
return strdup(tmp);
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}
char*
dumpslices(DCEslice* slice, unsigned int rank)
{
int i;
NCbytes* buf;
char* result = NULL;
buf = ncbytesnew();
for(i=0;i<rank;i++,slice++) {
char* sslice = dumpslice(slice);
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if(sslice != NULL) {
ncbytescat(buf,sslice);
free(sslice);
}
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}
result = ncbytesdup(buf);
ncbytesfree(buf);
return result;
}
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void
dumpraw(void* o)
{
fprintf(stderr,"%s\n",dcerawtostring(o));
fflush(stderr);
}
void
dumplistraw(NClist* l)
{
fprintf(stderr,"%s\n",dcerawlisttostring(l));
fflush(stderr);
}
/* For debugging */
void
dumpstringlist(NClist* l)
{
int i;
for(i=0;i<nclistlength(l);i++) {
const char* s = (const char*)nclistget(l,i);
fprintf(stderr,"[%d]: |%s|\n",i,s);
}
fflush(stderr);
}