netcdf-c/libdap4/d4file.c

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Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
/*********************************************************************
* Copyright 2016, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*********************************************************************/
#include "ncdispatch.h"
#include "ncd4dispatch.h"
#include "d4includes.h"
#include "d4read.h"
#include "d4curlfunctions.h"
#if defined(_WIN32) || defined(_WIN64)
#include <process.h>
#include <direct.h>
#endif
#ifdef HAVE_SYS_STAT_H
#include <sys/stat.h>
#endif
/**************************************************/
/* Forward */
static void applyclientmetacontrols(NCD4meta* meta);
static void applyclientparamcontrols(NCD4INFO*);
static int constrainable(NCURI*);
static void freeCurl(NCD4curl*);
static void freeInfo(NCD4INFO*);
static int paramcheck(NCD4INFO*, const char* key, const char* subkey);
static const char* getparam(NCD4INFO* info, const char* key);
static int set_curl_properties(NCD4INFO*);
/**************************************************/
/* Constants */
static const char* checkseps = "+,:;";
/**************************************************/
int
NCD4_open(const char * path, int mode,
int basepe, size_t *chunksizehintp,
int useparallel, void* mpidata,
NC_Dispatch* dispatch, NC* nc)
{
int ret = NC_NOERR;
NCD4INFO* d4info = NULL;
const char* value;
NCD4meta* meta;
if(path == NULL)
return THROW(NC_EDAPURL);
assert(dispatch != NULL);
/* Setup our NC and NCDAPCOMMON state*/
d4info = (NCD4INFO*)calloc(1,sizeof(NCD4INFO));
if(d4info == NULL) {ret = NC_ENOMEM; goto done;}
nc->dispatchdata = d4info;
nc->int_ncid = nc__pseudofd(); /* create a unique id */
d4info->controller = (NC*)nc;
/* Parse url and params */
if(ncuriparse(nc->path,&d4info->uri) != NCU_OK)
{ret = NC_EDAPURL; goto done;}
if(!constrainable(d4info->uri))
SETFLAG(d4info->controls.flags,NCF_UNCONSTRAINABLE);
/* fail if we are unconstrainable but have constraints */
if(FLAGSET(d4info->controls.flags,NCF_UNCONSTRAINABLE)) {
if(d4info->uri->query != NULL) {
nclog(NCLOGWARN,"Attempt to constrain an unconstrainable data source: %s",
d4info->uri->query);
ret = THROW(NC_EDAPCONSTRAINT);
goto done;
}
}
/* process control client parameters */
applyclientparamcontrols(d4info);
/* Use libsrc4 code (netcdf-4) for storing metadata */
{
char tmpname[NC_MAX_NAME];
/* Create fake file name: exact name must be unique,
but is otherwise irrelevant because we are using NC_DISKLESS
*/
if(strlen(d4info->controls.substratename) > 0)
snprintf(tmpname,sizeof(tmpname),"%s",d4info->controls.substratename);
else
snprintf(tmpname,sizeof(tmpname),"tmp_%d",nc->int_ncid);
/* Now, use the file to create the hidden, in-memory netcdf file.
We want this hidden file to always be NC_NETCDF4, so we need to
force default format temporarily in case user changed it.
*/
{
int new = NC_NETCDF4;
int old = 0;
int ncflags = NC_DISKLESS|NC_NETCDF4|NC_CLOBBER;
if(FLAGSET(d4info->controls.debugflags,NCF_DEBUG_COPY))
ncflags |= NC_WRITE;
nc_set_default_format(new,&old); /* save and change */
ret = nc_create(tmpname,ncflags,&d4info->substrate.nc4id);
nc_set_default_format(old,&new); /* restore */
}
if(ret != NC_NOERR) goto done;
/* Avoid fill */
nc_set_fill(getnc4id(nc),NC_NOFILL,NULL);
}
/* Turn on logging; only do this after oc_open*/
if((value = ncurilookup(d4info->uri,"log")) != NULL) {
ncloginit();
if(nclogopen(value))
ncsetlogging(1);
ncloginit();
if(nclogopen(value))
ncsetlogging(1);
}
/* Setup a curl connection */
{
CURL* curl = NULL; /* curl handle*/
d4info->curl = (NCD4curl*)calloc(1,sizeof(NCD4curl));
if(d4info->curl == NULL)
{ret = NC_ENOMEM; goto done;}
/* create the connection */
if((ret=NCD4_curlopen(&curl))!= NC_NOERR) goto done;
d4info->curl->curl = curl;
if((ret=set_curl_properties(d4info))!= NC_NOERR) goto done;
/* Set the one-time curl flags */
if((ret=NCD4_set_flags_perlink(d4info))!= NC_NOERR) goto done;
#if 1 /* temporarily make per-link */
if((ret=NCD4_set_flags_perfetch(d4info))!= NC_NOERR) goto done;
#endif
}
d4info->curl->packet = ncbytesnew();
ncbytessetalloc(d4info->curl->packet,DFALTPACKETSIZE); /*initial reasonable size*/
/* fetch the dmr + data*/
{
int inmem = FLAGSET(d4info->controls.flags,NCF_ONDISK) ? 0 : 1;
if((ret = NCD4_readDAP(d4info,inmem))) goto done;
}
/* if the url goes astray to a random web page, then try to just dump it */
{
char* response = ncbytescontents(d4info->curl->packet);
size_t responselen = ncbyteslength(d4info->curl->packet);
/* Apply some heuristics to see what we have.
The leading byte will have the chunk flags, which should
be less than 0x0f (for now). However, it will not be zero if
the data was little-endian
*/
if(responselen == 0 || response[0] >= ' ') {
/* does not look like a chunk, so probable server failure */
if(responselen == 0)
nclog(NCLOGERR,"Empty DAP4 response");
else {/* probable html response */
nclog(NCLOGERR,"Unexpected DAP response:");
nclog(NCLOGERR,"==============================");
nclogtext(NCLOGERR,response);
nclog(NCLOGERR,"==============================\n");
}
ret = NC_EDAPSVC;
fflush(stderr);
goto done;
}
}
/* Build the meta data */
if((d4info->substrate.metadata=NCD4_newmeta(ncbyteslength(d4info->curl->packet),
ncbytescontents(d4info->curl->packet)))==NULL)
{ret = NC_ENOMEM; goto done;}
meta = d4info->substrate.metadata;
meta->controller = d4info;
meta->ncid = getnc4id(nc); /* Transfer netcdf ncid */
/* process meta control parameters */
applyclientmetacontrols(meta);
/* Infer the mode */
if((ret=NCD4_infermode(meta))) goto done;
if((ret=NCD4_dechunk(meta))) goto done;
#ifdef D4DUMPDMR
{
fprintf(stderr,"=============\n");
fputs(d4info->substrate.metadata->serial.dmr,stderr);
fprintf(stderr,"\n=============\n");
fflush(stderr);
}
#endif
if((ret = NCD4_parse(d4info->substrate.metadata))) goto done;
#ifdef D4DEBUGMETA
{
fprintf(stderr,"\n/////////////\n");
NCbytes* buf = ncbytesnew();
NCD4_print(d4info->substrate.metadata,buf);
ncbytesnull(buf);
fputs(ncbytescontents(buf),stderr);
ncbytesfree(buf);
fprintf(stderr,"\n/////////////\n");
fflush(stderr);
}
#endif
if((ret = NCD4_metabuild(d4info->substrate.metadata,d4info->substrate.metadata->ncid))) goto done;
if(ret != NC_NOERR && ret != NC_EVARSIZE) goto done;
if((ret = NCD4_processdata(d4info->substrate.metadata))) goto done;
return THROW(ret);
done:
if(ret) {
freeInfo(d4info);
nc->dispatchdata = NULL;
}
return THROW(ret);
}
int
NCD4_close(int ncid)
{
int ret = NC_NOERR;
NC* nc;
NCD4INFO* d4info;
int substrateid;
ret = NC_check_id(ncid, (NC**)&nc);
if(ret != NC_NOERR) goto done;
d4info = (NCD4INFO*)nc->dispatchdata;
substrateid = makenc4id(nc,ncid);
/* We call abort rather than close to avoid trying to write anything,
except if we are debugging
*/
if(FLAGSET(d4info->controls.debugflags,NCF_DEBUG_COPY)) {
/* Dump the data into the substrate */
if((ret = NCD4_debugcopy(d4info)))
goto done;
ret = nc_close(substrateid);
} else {
ret = nc_abort(substrateid);
}
freeInfo(d4info);
done:
return THROW(ret);
}
int
NCD4_abort(int ncid)
{
return NCD4_close(ncid);
}
/**************************************************/
static void
freeInfo(NCD4INFO* d4info)
{
if(d4info == NULL) return;
d4info->controller = NULL; /* break link */
nullfree(d4info->rawurltext);
nullfree(d4info->urltext);
ncurifree(d4info->uri);
freeCurl(d4info->curl);
nullfree(d4info->data.memory);
nullfree(d4info->data.ondiskfilename);
if(d4info->data.ondiskfile != NULL)
fclose(d4info->data.ondiskfile);
nullfree(d4info->substrate.filename);
NCD4_reclaimMeta(d4info->substrate.metadata);
free(d4info);
}
static void
freeCurl(NCD4curl* curl)
{
if(curl == NULL) return;
NCD4_curlclose(curl->curl);
ncbytesfree(curl->packet);
nullfree(curl->errdata.code);
nullfree(curl->errdata.message);
nullfree(curl->curlflags.useragent);
nullfree(curl->curlflags.cookiejar);
nullfree(curl->curlflags.netrc);
nullfree(curl->ssl.certificate);
nullfree(curl->ssl.key);
nullfree(curl->ssl.keypasswd);
nullfree(curl->ssl.cainfo);
nullfree(curl->ssl.capath);
nullfree(curl->proxy.host);
nullfree(curl->proxy.userpwd);
nullfree(curl->creds.userpwd);
}
/* Define the set of protocols known to be constrainable */
static char* constrainableprotocols[] = {"http", "https",NULL};
static int
constrainable(NCURI* durl)
{
char** protocol = constrainableprotocols;
for(;*protocol;protocol++) {
if(strcmp(durl->protocol,*protocol)==0)
return 1;
}
return 0;
}
/*
Set curl properties for link based on rc files etc.
*/
static int
set_curl_properties(NCD4INFO* d4info)
{
int ret = NC_NOERR;
/* defaults first */
NCD4_rcdefault(d4info);
/* extract the relevant triples into d4info */
NCD4_rcprocess(d4info);
if(d4info->curl->curlflags.useragent == NULL) {
size_t len = strlen(DFALTUSERAGENT) + strlen(VERSION) + 1;
char* agent = (char*)malloc(len+1);
strncpy(agent,DFALTUSERAGENT,len);
strncat(agent,VERSION,len);
d4info->curl->curlflags.useragent = agent;
}
/* Some servers (e.g. thredds and columbia) appear to require a place
to put cookies in order for some security functions to work
*/
if(d4info->curl->curlflags.cookiejar != NULL
&& strlen(d4info->curl->curlflags.cookiejar) == 0) {
free(d4info->curl->curlflags.cookiejar);
d4info->curl->curlflags.cookiejar = NULL;
}
if(d4info->curl->curlflags.cookiejar == NULL) {
/* If no cookie file was defined, define a default */
char tmp[4096+1];
int ok;
#if defined(_WIN32) || defined(_WIN64)
int pid = _getpid();
#else
pid_t pid = getpid();
#endif
snprintf(tmp,sizeof(tmp)-1,"%s/%s.%ld/",NCD4_globalstate->tempdir,"netcdf",(long)pid);
#if defined(_WIN32) || defined(_WIN64)
ok = _mkdir(tmp);
#else
ok = mkdir(tmp,S_IRUSR | S_IWUSR | S_IXUSR);
#endif
if(ok != 0 && errno != EEXIST) {
fprintf(stderr,"Cannot create cookie directory\n");
goto fail;
}
errno = 0;
/* Create the unique cookie file name */
ok = NCD4_mktmp(tmp,&d4info->curl->curlflags.cookiejar);
d4info->curl->curlflags.createdflags |= COOKIECREATED;
if(ok != NC_NOERR && errno != EEXIST) {
fprintf(stderr,"Cannot create cookie file\n");
goto fail;
}
errno = 0;
}
assert(d4info->curl->curlflags.cookiejar != NULL);
/* Make sure the cookie jar exists and can be read and written */
{
FILE* f = NULL;
char* fname = d4info->curl->curlflags.cookiejar;
/* See if the file exists already */
f = fopen(fname,"r");
if(f == NULL) {
/* Ok, create it */
f = fopen(fname,"w+");
if(f == NULL) {
fprintf(stderr,"Cookie file cannot be read and written: %s\n",fname);
{ret= NC_EPERM; goto fail;}
}
} else { /* test if file can be written */
fclose(f);
f = fopen(fname,"r+");
if(f == NULL) {
fprintf(stderr,"Cookie file is cannot be written: %s\n",fname);
{ret = NC_EPERM; goto fail;}
}
}
if(f != NULL) fclose(f);
}
return THROW(ret);
fail:
return THROW(ret);
}
static void
applyclientparamcontrols(NCD4INFO* info)
{
NCD4meta* meta = info->substrate.metadata;
const char* value;
/* clear the flags */
CLRFLAG(info->controls.flags,NCF_CACHE);
CLRFLAG(info->controls.flags,NCF_SHOWFETCH);
CLRFLAG(info->controls.flags,NCF_NC4);
CLRFLAG(info->controls.flags,NCF_NCDAP);
/* Turn on any default on flags */
SETFLAG(info->controls.flags,DFALT_ON_FLAGS);
SETFLAG(info->controls.flags,(NCF_NC4|NCF_NCDAP));
if(paramcheck(info,"show","fetch"))
SETFLAG(info->controls.flags,NCF_SHOWFETCH);
if(paramcheck(info,"translate","nc4"))
info->controls.translation = NCD4_TRANSNC4;
/* Look at the debug flags */
if(paramcheck(info,"debug","copy"))
SETFLAG(info->controls.debugflags,NCF_DEBUG_COPY); /* => close */
value = getparam(info,"substratename");
if(value != NULL)
strncpy(info->controls.substratename,value,NC_MAX_NAME);
}
static void
applyclientmetacontrols(NCD4meta* meta)
{
NCD4INFO* info = meta->controller;
const char* value = getparam(info,"checksummode");
if(value != NULL) {
if(strcmp(value,"ignore")==0)
meta->ignorechecksums = 1;
}
}
/* Search for substring in value of param. If substring == NULL; then just
check if param is defined.
*/
static int
paramcheck(NCD4INFO* info, const char* key, const char* subkey)
{
const char* value;
char* p;
value = getparam(info, key);
if(value == NULL)
return 0;
if(subkey == NULL) return 1;
p = strstr(value,subkey);
if(p == NULL) return 0;
p += strlen(subkey);
if(*p != '\0' && strchr(checkseps,*p) == NULL) return 0;
return 1;
}
/*
Given a parameter key, return its value or NULL if not defined.
*/
static const char*
getparam(NCD4INFO* info, const char* key)
{
const char* value;
if(info == NULL || key == NULL) return NULL;
if((value=ncurilookup(info->uri,key)) == NULL)
return NULL;
return value;
}