netcdf-c/libhdf4/hdf4dispatch.c

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/* Copyright 2018, UCAR/Unidata See netcdf/COPYRIGHT file for copying
* and redistribution conditions.*/
/**
* @file
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* @internal Dispatch code for HDF4. HDF4 access is read-only, for
* HDF4 SD files only.
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*
* @author Ed Hartnett
*/
#include "config.h"
#include <stdlib.h>
#include "hdf4dispatch.h"
#include "nc4dispatch.h"
/* This is the dispatch object that holds pointers to all the
* functions that make up the HDF4 dispatch interface. */
static const NC_Dispatch HDF4_dispatcher = {
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NC_FORMATX_NC_HDF4,
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NC_DISPATCH_VERSION,
NC_RO_create,
NC_HDF4_open,
NC_RO_redef,
NC_RO__enddef,
NC_RO_sync,
NC_HDF4_abort,
NC_HDF4_close,
NC_RO_set_fill,
NC_HDF4_inq_format,
NC_HDF4_inq_format_extended,
NC4_inq,
NC4_inq_type,
NC_RO_def_dim,
NC4_inq_dimid,
NC4_inq_dim,
NC4_inq_unlimdim,
NC_RO_rename_dim,
NC4_inq_att,
NC4_inq_attid,
NC4_inq_attname,
NC_RO_rename_att,
NC_RO_del_att,
NC4_get_att,
NC_RO_put_att,
NC_RO_def_var,
NC4_inq_varid,
NC_RO_rename_var,
NC_HDF4_get_vara,
NC_RO_put_vara,
NCDEFAULT_get_vars,
NCDEFAULT_put_vars,
NCDEFAULT_get_varm,
NCDEFAULT_put_varm,
NC4_inq_var_all,
NC_NOTNC4_var_par_access,
NC_RO_def_var_fill,
NC4_show_metadata,
NC4_inq_unlimdims,
NC4_inq_ncid,
NC4_inq_grps,
NC4_inq_grpname,
NC4_inq_grpname_full,
NC4_inq_grp_parent,
NC4_inq_grp_full_ncid,
NC4_inq_varids,
NC4_inq_dimids,
NC4_inq_typeids,
NC4_inq_type_equal,
NC_NOTNC4_def_grp,
NC_NOTNC4_rename_grp,
NC4_inq_user_type,
NC4_inq_typeid,
NC_NOTNC4_def_compound,
NC_NOTNC4_insert_compound,
NC_NOTNC4_insert_array_compound,
NC_NOTNC4_inq_compound_field,
NC_NOTNC4_inq_compound_fieldindex,
NC_NOTNC4_def_vlen,
NC_NOTNC4_put_vlen_element,
NC_NOTNC4_get_vlen_element,
NC_NOTNC4_def_enum,
NC_NOTNC4_insert_enum,
NC_NOTNC4_inq_enum_member,
NC_NOTNC4_inq_enum_ident,
NC_NOTNC4_def_opaque,
NC_NOTNC4_def_var_deflate,
NC_NOTNC4_def_var_fletcher32,
NC_NOTNC4_def_var_chunking,
NC_NOTNC4_def_var_endian,
NC_NOTNC4_def_var_filter,
NC_NOTNC4_set_var_chunk_cache,
Add support for multiple filters per variable. re: https://github.com/Unidata/netcdf-c/issues/1584 Support has been added for multiple filters per variable. This affects a number of components in netcdf. The new APIs are documented in NUG/filters.md. The primary changes are: * A set of new functions are provided (see __include/netcdf_filter.h__). - Obtain a list of the filters associated with a variable - Obtain the parameters for a specific filter. * The existing __nc_inq_var_filter__ function now returns info about the first defined filter. * The utilities (ncgen, ncdump, and nccopy) now support an extended format for specifying a sequence of filters. The general form is __<filter>|<filter>..._. * The ncdump **_Filter** attribute now dumps a list of all the filters associated with a variable using the above new format. * Filter specifications can now use a filter name instead of number for filters known to the netcdf library, which in turn is taken from the HDF5 filter registration page. * New errors are defined: NC_EFILTER and NC_ENOFILTER. The latter is returned if an attempt is made to access an unknown filter. * Internally, the dispatch table has been extended to add a function to handle all of the filter functions. * New, filter-related, tests were added to nc_test4. * A new plugin was added to the plugins directory to help with testing. Notes: 1. The shuffle and fletcher32 filters are not part of the multifilter system. Misc. changes: 1. A debug module was added to libhdf5 to help catch error locations.
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NC_NOTNC4_get_var_chunk_cache,
This PR adds EXPERIMENTAL support for accessing data in the cloud using a variant of the Zarr protocol and storage format. This enhancement is generically referred to as "NCZarr". The data model supported by NCZarr is netcdf-4 minus the user-defined types and the String type. In this sense it is similar to the CDF-5 data model. More detailed information about enabling and using NCZarr is described in the document NUG/nczarr.md and in a [Unidata Developer's blog entry](https://www.unidata.ucar.edu/blogs/developer/en/entry/overview-of-zarr-support-in). WARNING: this code has had limited testing, so do use this version for production work. Also, performance improvements are ongoing. Note especially the following platform matrix of successful tests: Platform | Build System | S3 support ------------------------------------ Linux+gcc | Automake | yes Linux+gcc | CMake | yes Visual Studio | CMake | no Additionally, and as a consequence of the addition of NCZarr, major changes have been made to the Filter API. NOTE: NCZarr does not yet support filters, but these changes are enablers for that support in the future. Note that it is possible (probable?) that there will be some accidental reversions if the changes here did not correctly mimic the existing filter testing. In any case, previously filter ids and parameters were of type unsigned int. In order to support the more general zarr filter model, this was all converted to char*. The old HDF5-specific, unsigned int operations are still supported but they are wrappers around the new, char* based nc_filterx_XXX functions. This entailed at least the following changes: 1. Added the files libdispatch/dfilterx.c and include/ncfilter.h 2. Some filterx utilities have been moved to libdispatch/daux.c 3. A new entry, "filter_actions" was added to the NCDispatch table and the version bumped. 4. An overly complex set of structs was created to support funnelling all of the filterx operations thru a single dispatch "filter_actions" entry. 5. Move common code to from libhdf5 to libsrc4 so that it is accessible to nczarr. Changes directly related to Zarr: 1. Modified CMakeList.txt and configure.ac to support both C and C++ -- this is in support of S3 support via the awd-sdk libraries. 2. Define a size64_t type to support nczarr. 3. More reworking of libdispatch/dinfermodel.c to support zarr and to regularize the structure of the fragments section of a URL. Changes not directly related to Zarr: 1. Make client-side filter registration be conditional, with default off. 2. Hack include/nc4internal.h to make some flags added by Ed be unique: e.g. NC_CREAT, NC_INDEF, etc. 3. cleanup include/nchttp.h and libdispatch/dhttp.c. 4. Misc. changes to support compiling under Visual Studio including: * Better testing under windows for dirent.h and opendir and closedir. 5. Misc. changes to the oc2 code to support various libcurl CURLOPT flags and to centralize error reporting. 6. By default, suppress the vlen tests that have unfixed memory leaks; add option to enable them. 7. Make part of the nc_test/test_byterange.sh test be contingent on remotetest.unidata.ucar.edu being accessible. Changes Left TO-DO: 1. fix provenance code, it is too HDF5 specific.
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NC_NOTNC4_filter_actions,
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};
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const NC_Dispatch *HDF4_dispatch_table = NULL;
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/**
* @internal Initialize HDF4 dispatch layer.
*
* @return ::NC_NOERR No error.
* @author Ed Hartnett
*/
int
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NC_HDF4_initialize(void)
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{
HDF4_dispatch_table = &HDF4_dispatcher;
return NC_NOERR;
}
/**
* @internal Finalize HDF4 dispatch layer.
*
* @return ::NC_NOERR No error.
* @author Ed Hartnett
*/
int
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NC_HDF4_finalize(void)
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{
return NC_NOERR;
}