2010-06-03 21:24:43 +08:00
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## This is a automake file, part of Unidata's netCDF package.
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2018-12-07 06:36:53 +08:00
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# Copyright 2018, see the COPYRIGHT file for more information.
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2010-06-03 21:24:43 +08:00
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# This file builds and runs the ncdump program.
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2017-11-23 03:10:58 +08:00
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# Ed Hartnett, Dennis Heimbigner, Ward Fisher
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2010-06-03 21:24:43 +08:00
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2019-03-17 08:08:49 +08:00
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2019-03-16 02:05:27 +08:00
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#SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
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#sh_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
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#LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
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#TESTS_ENVIRONMENT = export SETX=1;
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2018-03-03 07:55:58 +08:00
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2011-03-22 04:31:56 +08:00
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# Put together AM_CPPFLAGS and AM_LDFLAGS.
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include $(top_srcdir)/lib_flags.am
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2014-08-26 04:30:11 +08:00
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LDADD = ${top_builddir}/liblib/libnetcdf.la
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2018-08-02 04:27:09 +08:00
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noinst_PROGRAMS=
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2017-11-17 23:22:49 +08:00
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# Note which tests depend on other tests. Necessary for make -j check.
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TEST_EXTENSIONS = .sh
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2017-11-21 08:26:06 +08:00
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XFAIL_TESTS=""
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2017-11-17 23:22:49 +08:00
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2011-03-22 04:31:56 +08:00
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# This is the program we're building, and it's sources.
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2014-08-26 04:30:11 +08:00
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bin_PROGRAMS = ncdump
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2017-11-12 07:45:03 +08:00
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ncdump_SOURCES = ncdump.c vardata.c dumplib.c indent.c nctime0.c \
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ncdump.h vardata.h dumplib.h indent.h isnan.h nctime0.h cdl.h utils.h \
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utils.c nciter.h nciter.c nccomps.h
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2011-03-22 04:31:56 +08:00
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# Another utility program that copies any netCDF file using only the
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# netCDF API
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bin_PROGRAMS += nccopy
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2017-11-12 07:45:03 +08:00
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nccopy_SOURCES = nccopy.c nciter.c nciter.h chunkspec.h chunkspec.c \
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2018-07-27 10:16:02 +08:00
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utils.h utils.c dimmap.h dimmap.c list.c list.h
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2011-03-22 04:31:56 +08:00
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2019-03-24 04:02:39 +08:00
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# Wei-keng Liao's (wkliao@eecs.northwestern.edu)
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# netcdf-3 validator program
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# (https://github.com/Parallel-NetCDF/PnetCDF/blob/master/src/utils/ncvalidator/ncvalidator.c)
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# that prints out the structure of a netcdf-3 file.
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# This program is built but not installed.
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noinst_PROGRAMS += ncvalidator
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ncvalidator_SOURCES = ncvalidator.c
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2017-11-18 03:29:12 +08:00
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# A simple netcdf-4 metadata -> xml printer. Do not install.
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2018-12-01 23:24:56 +08:00
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if USE_HDF5
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2018-08-02 04:27:09 +08:00
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noinst_PROGRAMS += nc4print
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2017-03-09 08:01:10 +08:00
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nc4print_SOURCES = nc4print.c
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endif
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# Conditionally build the ocprint program, but do not install
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if ENABLE_DAP
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2018-08-02 04:19:50 +08:00
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noinst_PROGRAMS += ocprint
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2017-11-12 07:45:03 +08:00
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ocprint_SOURCES = ocprint.c
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2017-03-09 08:01:10 +08:00
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endif
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2011-03-22 04:31:56 +08:00
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# This is the man page.
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man_MANS = ncdump.1 nccopy.1
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2012-04-13 10:41:00 +08:00
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if BUILD_TESTSETS
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2019-09-18 10:27:43 +08:00
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# C programs needed by shell scripts for classic tests.
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2017-11-12 07:45:03 +08:00
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check_PROGRAMS = rewrite-scalar ref_ctest ref_ctest64 ncdump tst_utf8 \
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bom tst_dimsizes nctrunc
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2016-05-04 11:17:06 +08:00
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2017-11-18 03:29:12 +08:00
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# Tests for classic and 64-bit offset files.
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2017-11-25 22:28:07 +08:00
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TESTS = tst_inttags.sh run_tests.sh tst_64bit.sh ref_ctest \
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ref_ctest64 tst_output.sh tst_lengths.sh tst_calendars.sh \
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run_utf8_tests.sh tst_nccopy3.sh tst_nccopy3_subset.sh \
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tst_charfill.sh tst_iter.sh tst_formatx3.sh tst_bom.sh \
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2019-02-26 11:57:23 +08:00
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tst_dimsizes.sh run_ncgen_tests.sh tst_ncgen4_classic.sh test_radix.sh
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2017-11-18 01:16:17 +08:00
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2017-11-25 22:30:17 +08:00
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# The tst_nccopy3.sh test uses output from a bunch of other
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# tests. This records the dependency so parallel builds work.
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2017-11-18 02:07:24 +08:00
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tst_nccopy3.log: tst_calendars.log run_utf8_tests.log tst_output.log \
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2017-11-19 00:28:25 +08:00
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tst_64bit.log run_tests.log tst_lengths.log
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2016-05-04 11:17:06 +08:00
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2017-11-21 06:06:10 +08:00
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TESTS += tst_null_byte_padding.sh
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2017-11-21 08:26:06 +08:00
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if USE_STRICT_NULL_BYTE_HEADER_PADDING
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XFAIL_TESTS += tst_null_byte_padding.sh
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2017-11-21 06:06:10 +08:00
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endif
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2012-03-16 04:50:28 +08:00
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if LARGE_FILE_TESTS
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TESTS += tst_iter.sh
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endif
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2018-12-01 23:24:56 +08:00
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if USE_HDF5
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2017-11-18 03:29:12 +08:00
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# NetCDF-4 has some extra C programs to build. These will be run by
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# the shell script tests.
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check_PROGRAMS += tst_fileinfo tst_create_files tst_h_rdc0 \
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tst_group_data tst_enum_data tst_opaque_data tst_string_data \
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tst_vlen_data tst_comp tst_comp2 tst_nans tst_special_atts \
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tst_unicode tst_fillbug tst_compress tst_chunking tst_h_scalar
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2018-11-16 01:00:38 +08:00
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check_PROGRAMS += tst_vlen_demo
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2017-11-18 03:29:12 +08:00
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# Tests for netCDF-4 behavior.
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TESTS += tst_fileinfo.sh tst_hdf5_offset.sh tst_inttags4.sh \
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tst_netcdf4.sh tst_fillbug.sh tst_netcdf4_4.sh tst_nccopy4.sh \
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2018-07-27 10:16:02 +08:00
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tst_nccopy5.sh tst_grp_spec.sh tst_mud.sh tst_h_scalar.sh tst_formatx4.sh \
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2017-11-18 03:29:12 +08:00
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run_utf8_nc4_tests.sh run_back_comp_tests.sh run_ncgen_nc4_tests.sh \
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tst_ncgen4.sh
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2018-07-27 10:16:02 +08:00
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# Record interscript dependencies so parallel builds work.
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2017-11-25 19:31:58 +08:00
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tst_nccopy4.log: run_ncgen_tests.log tst_output.log tst_ncgen4.log \
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2017-11-26 22:13:10 +08:00
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tst_fillbug.log tst_netcdf4_4.log tst_h_scalar.log
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2018-07-27 10:16:02 +08:00
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tst_nccopy5.log: tst_nccopy4.log
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2018-12-01 23:24:56 +08:00
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endif #!USE_HDF5
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2010-06-03 21:24:43 +08:00
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2019-03-16 02:05:27 +08:00
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TESTS += tst_inmemory_nc3.sh tst_nccopy_w3.sh
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2018-12-01 23:24:56 +08:00
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if USE_HDF5
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2019-03-16 02:05:27 +08:00
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TESTS += tst_inmemory_nc4.sh tst_nccopy_w4.sh
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2017-11-18 03:29:12 +08:00
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endif
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2012-04-13 10:41:00 +08:00
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2019-11-01 06:08:57 +08:00
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if USE_HDF5
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# Re-activate the ncgen -lc tests
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2019-11-04 03:03:13 +08:00
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TESTS += tst_ctests.sh
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2019-11-01 06:08:57 +08:00
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endif
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2012-04-13 10:41:00 +08:00
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endif BUILD_TESTSETS
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2010-06-03 21:24:43 +08:00
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# These files all have to be included with the distribution.
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2017-11-18 03:29:12 +08:00
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EXTRA_DIST = run_tests.sh tst_64bit.sh tst_output.sh test0.cdl \
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ref_ctest1_nc4.cdl ref_ctest1_nc4c.cdl ref_tst_solar_1.cdl \
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ref_tst_solar_2.cdl tst_netcdf4.sh tst_netcdf4_4.sh ref_tst_small.cdl \
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tst_lengths.sh tst_ncml.cdl ref1.ncml ref_tst_group_data.cdl \
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ref_tst_enum_data.cdl ref_tst_opaque_data.cdl ref_tst_string_data.cdl \
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ref_tst_vlen_data.cdl ref_tst_comp.cdl ref_tst_unicode.cdl \
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ref_tst_nans.cdl small.cdl small2.cdl $(man_MANS) run_utf8_tests.sh \
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ref_tst_utf8.cdl ref_tst_fillbug.cdl tst_fillbug.sh tst_calendars.cdl \
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tst_calendars.sh ref_times.cdl ref_tst_special_atts.cdl \
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ref_tst_noncoord.cdl ref_tst_compounds2.nc ref_tst_compounds2.cdl \
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ref_tst_compounds3.nc ref_tst_compounds3.cdl ref_tst_compounds4.nc \
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ref_tst_compounds4.cdl ref_tst_group_data_v23.cdl tst_mslp.cdl \
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tst_bug321.cdl ref_tst_format_att.cdl ref_tst_format_att_64.cdl \
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2018-07-27 10:16:02 +08:00
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tst_nccopy3.sh tst_nccopy4.sh tst_nccopy5.sh ref_nc_test_netcdf4_4_0.nc \
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2017-11-18 03:29:12 +08:00
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run_back_comp_tests.sh ref_nc_test_netcdf4.cdl \
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ref_tst_special_atts3.cdl tst_brecs.cdl ref_tst_grp_spec0.cdl \
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ref_tst_grp_spec.cdl tst_grp_spec.sh ref_tst_charfill.cdl \
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tst_charfill.cdl tst_charfill.sh tst_iter.sh tst_mud.sh \
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ref_tst_mud4.cdl ref_tst_mud4-bc.cdl ref_tst_mud4_chars.cdl \
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inttags.cdl inttags4.cdl ref_inttags.cdl ref_inttags4.cdl \
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ref_tst_ncf213.cdl tst_h_scalar.sh run_utf8_nc4_tests.sh \
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2017-11-26 22:13:10 +08:00
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tst_formatx3.sh tst_formatx4.sh ref_tst_utf8_4.cdl \
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ref_tst_nc4_utf8_4.cdl tst_inttags.sh tst_inttags4.sh CMakeLists.txt \
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XGetopt.c tst_bom.sh tst_inmemory_nc3.sh tst_dimsizes.sh \
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tst_inmemory_nc4.sh tst_fileinfo.sh run_ncgen_tests.sh \
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ref_test_360_day_1900.nc ref_test_365_day_1900.nc \
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ref_test_366_day_1900.nc ref_test_360_day_1900.cdl \
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ref_test_365_day_1900.cdl ref_test_366_day_1900.cdl \
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tst_hdf5_offset.sh run_ncgen_nc4_tests.sh tst_nccopy3_subset.sh \
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ref_nccopy3_subset.nc ref_test_corrupt_magic.nc tst_ncgen_shared.sh \
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tst_ncgen4.sh tst_ncgen4_classic.sh tst_ncgen4_diff.sh \
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tst_ncgen4_cycle.sh tst_null_byte_padding.sh \
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2019-02-26 11:57:23 +08:00
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ref_null_byte_padding_test.nc ref_tst_irish_rover.nc ref_provenance_v1.nc \
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2019-03-16 02:05:27 +08:00
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ref_tst_radix.cdl tst_radix.cdl test_radix.sh \
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2019-04-19 00:53:16 +08:00
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ref_nccopy_w.cdl tst_nccopy_w3.sh tst_nccopy_w4.sh ref_no_ncproperty.nc
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re e-support UBS-599337
re pull request https://github.com/Unidata/netcdf-c/pull/405
re pull request https://github.com/Unidata/netcdf-c/pull/446
Notes:
1. This branch is a cleanup of the magic.dmh branch.
2. magic.dmh was originally merged, but caused problems with parallel IO.
It was re-issued as pull request https://github.com/Unidata/netcdf-c/pull/446.
3. This branch + pull request replace any previous pull requests and magic.dmh branch.
Given an otherwise valid netCDF file that has a corrupted header,
the netcdf library currently crashes. Instead, it should return
NC_ENOTNC.
Additionally, the NC_check_file_type code does not do the
forward search required by hdf5 files. It currently only looks
at file position 0 instead of 512, 1024, 2048,... Also, it turns
out that the HDF4 magic number is assumed to always be at the
beginning of the file (unlike HDF5).
The change is localized to libdispatch/dfile.c See
https://support.hdfgroup.org/release4/doc/DSpec_html/DS.pdf
Also, it turns out that the code in NC_check_file_type is duplicated
(mostly) in the function libsrc4/nc4file.c#nc_check_for_hdf.
This branch does the following.
1. Make NC_check_file_type return NC_ENOTNC instead of crashing.
2. Remove nc_check_for_hdf and centralize all file format checking
NC_check_file_type.
3. Add proper forward search for HDF5 files (but not HDF4 files)
to look for the magic number at offsets of 0, 512, 1024...
4. Add test tst_hdf5_offset.sh. This tests that hdf5 files with
an offset are properly recognized. It does so by prefixing
a legal file with some number of zero bytes: 512, 1024, etc.
5. Off-topic: Added -N flag to ncdump to force a specific output dataset name.
2017-10-25 06:25:09 +08:00
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# The L512.bin file is file containing exactly 512 bytes each of value 0.
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# It is used for creating hdf5 files with varying offsets for testing.
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EXTRA_DIST += L512.bin
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2012-01-10 02:49:15 +08:00
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2019-11-06 04:43:59 +08:00
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EXTRA_DIST += tst_ctests.sh ref_ctest_small_3.c ref_ctest_small_4.c \
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2019-11-04 03:03:13 +08:00
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ref_ctest_special_atts_4.c
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2019-11-01 06:08:57 +08:00
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2014-09-19 08:26:06 +08:00
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# CDL files and Expected results
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2017-11-18 03:29:12 +08:00
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SUBDIRS = cdl expected
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2017-11-19 05:20:04 +08:00
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CLEANFILES = tst_*.nc tmp*.nc test*.nc iter.* tmp*.cdl \
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2018-11-19 05:59:05 +08:00
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tst_output_*.cdl tst_output_*.c tst_utf8_*.cdl *.tmp tst_tst8.cdl \
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tst_netcdf4_*.cdl test1_ncdump.cdl test2_ncdump.cdl test1.cdl \
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ctest1.cdl test1_cdf5.cdl test2_cdf5.cdl test1_offset.cdl \
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2017-11-26 23:50:16 +08:00
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test2_offset.cdl ctest0.nc ctest0_64.nc c1.cdl c1_4.cdl ctest1_64.cdl \
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c0.nc c0_4.nc small.nc small2.nc c0tmp.nc c1.ncml utf8.cdl \
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utf8_64.cdl utf8.nc utf8_64.nc nc4_utf8.cdl nc4_utf8.nc \
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tst_unicode.cdl tst_group_data.cdl tst_compounds2.cdl tst_comp.cdl \
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tst_enum_data.cdl tst_small.cdl tst_times.cdl tst_solar_2.cdl \
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tst_string_data.cdl tst_fillbug.cdl tst_opaque_data.cdl \
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tst_compounds4.cdl tst_utf8.cdl tst_compounds3.cdl \
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tst_special_atts.cdl tst_nans.cdl tst_format_att_64.cdl \
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tst_vlen_data.cdl tst_solar_1.cdl tst_format_att.cdl \
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tst_nc_test_netcdf4_4_0.cdl tst_mud4.cdl tst_mud4-bc.cdl \
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tst_ncf213.cdl tst_h_scalar.cdl tst_mud4_chars.cdl inttags.nc \
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inttags4.nc tst_inttags.cdl tst_inttags4.cdl nc4_fileinfo.nc \
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hdf5_fileinfo.hdf nccopy3_subset_out.nc c5.nc \
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2017-11-19 05:20:04 +08:00
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compound_datasize_test.nc compound_datasize_test2.nc ncf199.nc \
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tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl \
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2017-11-12 08:33:51 +08:00
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tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl \
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2017-11-19 05:20:04 +08:00
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tst_ncf199.cdl tst_tst_gattenum.cdl tst_tst_usuffix.cdl ctest.c \
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2019-02-26 11:57:23 +08:00
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ctest64.c nccopy3_subset_out.nc camrun.c tst_ncf213.cdl tst_ncf213.nc \
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2019-11-01 06:08:57 +08:00
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tst_radix.nc tmp_radix.cdl ctest_small_3.c ctest_small_4.c \
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2019-11-06 05:06:15 +08:00
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ctest_special_atts_4.c
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