netcdf-c/cmake/dependencies.cmake

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################################
# PkgConfig
################################
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find_package(PkgConfig QUIET)
################################
# MakeDist
################################
# Enable 'dist and distcheck'.
# File adapted from http://ensc.de/cmake/FindMakeDist.cmake
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find_package(MakeDist)
# End 'enable dist and distcheck'
################################
# HDF4
################################
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if(ENABLE_HDF4)
set(USE_HDF4 ON )
# Check for include files, libraries.
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find_path(MFHDF_H_INCLUDE_DIR mfhdf.h)
if(NOT MFHDF_H_INCLUDE_DIR)
message(FATAL_ERROR "HDF4 Support specified, cannot find file mfhdf.h")
else()
target_include_directories(netcdf
PRIVATE
${MFHDF_H_INCLUDE_DIR}
)
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endif()
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find_library(HDF4_DF_LIB NAMES df libdf hdf)
if(NOT HDF4_DF_LIB)
message(FATAL_ERROR "Can't find or link to the hdf4 df library.")
endif()
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find_library(HDF4_MFHDF_LIB NAMES mfhdf libmfhdf)
if(NOT HDF4_MFHDF_LIB)
message(FATAL_ERROR "Can't find or link to the hdf4 mfhdf library.")
endif()
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set(HAVE_LIBMFHDF TRUE )
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set(HDF4_LIBRARIES ${HDF4_DF_LIB} ${HDF4_MFHDF_LIB} )
# End include files, libraries.
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message(STATUS "HDF4 libraries: ${HDF4_DF_LIB}, ${HDF4_MFHDF_LIB}")
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message(STATUS "Seeking HDF4 jpeg dependency.")
# Look for the jpeglib.h header file.
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find_path(JPEGLIB_H_INCLUDE_DIR jpeglib.h)
if(NOT JPEGLIB_H_INCLUDE_DIR)
message(FATAL_ERROR "HDF4 Support enabled but cannot find jpeglib.h")
else()
set(HAVE_JPEGLIB_H ON CACHE BOOL "")
set(HAVE_LIBJPEG TRUE )
target_include_directories(netcdf
PRIVATE
${JPEGLIB_H_INCLUDE_DIR}
)
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endif()
find_library(JPEG_LIB NAMES jpeg libjpeg)
if(NOT JPEG_LIB)
message(FATAL_ERROR "HDF4 Support enabled but cannot find libjpeg")
endif()
set(HDF4_LIBRARIES ${JPEG_LIB} ${HDF4_LIBRARIES} )
message(STATUS "Found JPEG libraries: ${JPEG_LIB}")
# Option to enable HDF4 file tests.
option(ENABLE_HDF4_FILE_TESTS "Run HDF4 file tests. This fetches sample HDF4 files from the Unidata ftp site to test with (requires curl)." ON)
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if(ENABLE_HDF4_FILE_TESTS)
find_program(PROG_CURL NAMES curl)
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if(PROG_CURL)
set(USE_HDF4_FILE_TESTS ON )
else()
message(STATUS "Unable to locate 'curl'. Disabling hdf4 file tests.")
set(USE_HDF4_FILE_TESTS OFF )
endif()
set(USE_HDF4_FILE_TESTS ${USE_HDF4_FILE_TESTS} )
endif()
endif()
################################
# HDF5
################################
##
# Option to Enable HDF5
#
# The HDF5 cmake variables differ between platform (linux/osx and Windows),
# as well as between HDF5 versions. As a result, this section is a bit convoluted.
#
# Note that the behavior seems much more stable across HDF5 versions under linux,
# so we do not have to do as much version-based tweaking.
#
# At the end of it, we should have the following defined:
#
# * HDF5_C_LIBRARY
# * HDF5_HL_LIBRARY
# * HDF5_LIBRARIES
# * HDF5_INCLUDE_DIR
# *
##
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if(USE_HDF5)
##
# Assert HDF5 version meets minimum required version.
##
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set(HDF5_VERSION_REQUIRED 1.8.10)
##
# Accommodate developers who have hdf5 libraries and
# headers on their system, but do not have a the hdf
# .cmake files. If this is the case, they should
# specify HDF5_HL_LIBRARY, HDF5_LIBRARY, HDF5_INCLUDE_DIR manually.
#
# This script will attempt to determine the version of the HDF5 library programatically.
##
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if(HDF5_C_LIBRARY AND HDF5_HL_LIBRARY AND HDF5_INCLUDE_DIR)
set(HDF5_LIBRARIES ${HDF5_C_LIBRARY} ${HDF5_HL_LIBRARY} )
set(HDF5_C_LIBRARIES ${HDF5_C_LIBRARY} )
set(HDF5_C_LIBRARY_hdf5 ${HDF5_C_LIBRARY} )
set(HDF5_HL_LIBRARIES ${HDF5_HL_LIBRARY} )
target_include_directories(netcdf
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PRIVATE
${HDF5_INCLUDE_DIR}
)
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message(STATUS "Using HDF5 C Library: ${HDF5_C_LIBRARY}")
message(STATUS "Using HDF5 HL LIbrary: ${HDF5_HL_LIBRARY}")
if (EXISTS "${HDF5_INCLUDE_DIR}/H5pubconf.h")
file(READ "${HDF5_INCLUDE_DIR}/H5pubconf.h" _hdf5_version_lines
REGEX "#define[ \t]+H5_VERSION")
string(REGEX REPLACE ".*H5_VERSION .*\"\(.*\)\".*" "\\1" _hdf5_version "${_hdf5_version_lines}")
set(HDF5_VERSION "${_hdf5_version}" CACHE STRING "")
set(HDF5_VERSION ${HDF5_VERSION} PARENT_SCOPE)
unset(_hdf5_version)
unset(_hdf5_version_lines)
endif ()
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message(STATUS "Found HDF5 libraries version ${HDF5_VERSION}")
###
# If HDF5_VERSION is still empty, we have a problem.
# Error out.
###
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if("${HDF5_VERSION}" STREQUAL "")
message(FATAL_ERR "Unable to determine HDF5 version. NetCDF requires at least version ${HDF5_VERSION_REQUIRED}. Please ensure that libhdf5 is installed and accessible.")
endif()
###
# Now that we know HDF5_VERSION isn't empty, we can check for minimum required version,
# and toggle various options.
###
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if(${HDF5_VERSION} VERSION_LESS ${HDF5_VERSION_REQUIRED})
message(FATAL_ERROR "netCDF requires at least HDF5 ${HDF5_VERSION_REQUIRED}. Found ${HDF5_VERSION}.")
endif()
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else(HDF5_C_LIBRARY AND HDF5_HL_LIBRARY AND HDF5_INCLUDE_DIR) # We are seeking out HDF5 with Find Package.
###
# For now we assume that if we are building netcdf
# as a shared library, we will use hdf5 as a shared
# library. If we are building netcdf statically,
# we will use a static library. This can be toggled
# by explicitly modifying NC_FIND_SHARED_LIBS.
##
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if(NC_FIND_SHARED_LIBS)
set(HDF5_USE_STATIC_LIBRARIES OFF)
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else(NC_FIND_SHARED_LIBS)
set(HDF5_USE_STATIC_LIBRARIES ON)
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endif(NC_FIND_SHARED_LIBS)
#####
# First, find the C and HL libraries.
#####
find_package(HDF5 ${HDF5_VERSION_REQUIRED} COMPONENTS C HL REQUIRED)
##
# Include the HDF5 include directory.
##
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if(HDF5_INCLUDE_DIRS AND NOT HDF5_INCLUDE_DIR)
set(HDF5_INCLUDE_DIR ${HDF5_INCLUDE_DIRS} )
endif()
message(STATUS "Using HDF5 include dir: ${HDF5_INCLUDE_DIR}")
target_include_directories(netcdf
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PRIVATE
${HDF5_INCLUDE_DIR}
)
###
# This is the block where we figure out what the appropriate
# variables are, and we ensure that we end up with
# HDF5_C_LIBRARY, HDF5_HL_LIBRARY and HDF5_LIBRARIES.
###
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if(MSVC)
####
# Environmental variables in Windows when using MSVC
# are a hot mess between versions.
####
##
# HDF5 1.8.15 defined HDF5_LIBRARIES.
##
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if(${HDF5_VERSION} VERSION_LESS "1.8.16")
set(HDF5_C_LIBRARY hdf5 )
set(HDF5_C_LIBRARY_hdf5 hdf5 )
endif(${HDF5_VERSION} VERSION_LESS "1.8.16")
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if(${HDF5_VERSION} VERSION_GREATER "1.8.15")
if(NOT HDF5_LIBRARIES AND HDF5_C_${NC_HDF5_LINK_TYPE_UPPER}_LIBRARY AND HDF5_HL_${NC_HDF5_LINK_TYPE_UPPER}_LIBRARY)
set(HDF5_C_LIBRARY ${HDF5_C_${NC_HDF5_LINK_TYPE_UPPER}_LIBRARY} )
set(HDF5_C_LIBRARY_hdf5 ${HDF5_C_${NC_HDF5_LINK_TYPE_UPPER}_LIBRARY} )
set(HDF5_HL_LIBRARY ${HDF5_HL_${NC_HDF5_LINK_TYPE_UPPER}_LIBRARY} )
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set(HDF5_LIBRARIES ${HDF5_C_${NC_HDF5_LINK_TYPE_UPPER}_LIBRARY} ${HDF5_HL_${NC_HDF5_LINK_TYPE_UPPER}_LIBRARY} )
endif()
endif(${HDF5_VERSION} VERSION_GREATER "1.8.15")
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else(MSVC)
# Depending on the install, either HDF5_hdf_library or
# HDF5_C_LIBRARIES may be defined. We must check for either.
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if(HDF5_C_LIBRARIES AND NOT HDF5_hdf5_LIBRARY)
set(HDF5_hdf5_LIBRARY ${HDF5_C_LIBRARIES} )
endif()
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# Some versions of find_package set HDF5_C_LIBRARIES, but not HDF5_C_LIBRARY
# We use HDF5_C_LIBRARY below, so need to make sure it is set.
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if(HDF5_C_LIBRARIES AND NOT HDF5_C_LIBRARY)
set(HDF5_C_LIBRARY ${HDF5_C_LIBRARIES} )
endif()
# Same issue as above...
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if(HDF5_HL_LIBRARIES AND NOT HDF5_HL_LIBRARY)
set(HDF5_HL_LIBRARY ${HDF5_HL_LIBRARIES} )
endif()
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endif(MSVC)
if(NOT HDF5_C_LIBRARY)
set(HDF5_C_LIBRARY hdf5 )
endif()
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endif(HDF5_C_LIBRARY AND HDF5_HL_LIBRARY AND HDF5_INCLUDE_DIR)
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find_package(Threads)
# There is a missing case in the above code so default it
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if(NOT HDF5_C_LIBRARY_hdf5 OR "${HDF5_C_LIBRARY_hdf5}" STREQUAL "" )
set(HDF5_C_LIBRARY_hdf5 "${HDF5_C_LIBRARY}" )
endif()
include(cmake/check_hdf5.cmake)
# Check to ensure that HDF5 was built with zlib.
# This needs to be near the beginning since we
# need to know whether to add "-lz" to the symbol
# tests below.
check_hdf5_feature(HAVE_HDF5_ZLIB H5_HAVE_ZLIB_H)
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if(NOT HAVE_HDF5_ZLIB)
message(FATAL_ERROR "HDF5 was built without zlib. Rebuild HDF5 with zlib.")
else()
# If user has specified the `ZLIB_LIBRARY`, use it; otherwise try to find...
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if(NOT ZLIB_LIBRARY)
find_package(ZLIB)
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if(ZLIB_FOUND)
set(ZLIB_LIBRARY ${ZLIB_LIBRARIES} )
else()
message(FATAL_ERROR "HDF5 Requires ZLIB, but cannot find libz.")
endif()
endif()
set(CMAKE_REQUIRED_LIBRARIES ${ZLIB_LIBRARY} ${CMAKE_REQUIRED_LIBRARIES} )
message(STATUS "HDF5 has zlib.")
endif()
# Check to see if H5Z_SZIP exists in HDF5_Libraries. If so, we must use szip library.
check_hdf5_feature(HAVE_H5Z_SZIP H5_HAVE_FILTER_SZIP)
####
# Check to see if HDF5 library is 1.10.6 or greater.
# Used to control path name conversion
####
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if(${HDF5_VERSION} VERSION_GREATER "1.10.5")
set(HDF5_UTF8_PATHS ON )
else()
set(HDF5_UTF8_PATHS OFF )
endif()
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message("-- HDF5_UTF8_PATHS (HDF5 version 1.10.6+): ${HDF5_UTF8_PATHS}")
# Find out if HDF5 was built with parallel support.
# Do that by checking for the targets H5Pget_fapl_mpiposx and
# H5Pget_fapl_mpio in ${HDF5_LIB}.
# H5Pset_fapl_mpiposix and H5Pget_fapl_mpiposix have been removed since HDF5 1.8.12.
# Use H5Pset_fapl_mpio and H5Pget_fapl_mpio, instead.
# CHECK_LIBRARY_EXISTS(${HDF5_C_LIBRARY_hdf5} H5Pget_fapl_mpiposix "" HDF5_IS_PARALLEL_MPIPOSIX)
CHECK_LIBRARY_EXISTS(${HDF5_C_LIBRARY_hdf5} H5Pget_fapl_mpio "" HDF5_IS_PARALLEL_MPIO)
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if(HDF5_IS_PARALLEL_MPIO)
set(HDF5_PARALLEL ON)
else()
set(HDF5_PARALLEL OFF)
endif()
set(HDF5_PARALLEL ${HDF5_PARALLEL} )
#Check to see if HDF5 library has collective metadata APIs, (HDF5 >= 1.10.0)
CHECK_LIBRARY_EXISTS(${HDF5_C_LIBRARY_hdf5} H5Pset_all_coll_metadata_ops "" HDF5_HAS_COLL_METADATA_OPS)
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if(HDF5_PARALLEL)
set(HDF5_CC h5pcc )
else()
set(HDF5_CC h5cc )
endif()
# Check to see if H5Dread_chunk is available
CHECK_LIBRARY_EXISTS(${HDF5_C_LIBRARY_hdf5} H5Dread_chunk "" HAS_READCHUNKS)
# Check to see if H5Pset_fapl_ros3 is available
CHECK_LIBRARY_EXISTS(${HDF5_C_LIBRARY_hdf5} H5Pset_fapl_ros3 "" HAS_HDF5_ROS3)
# Check to see if this is hdf5-1.10.3 or later.
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if(HAS_READCHUNKS)
set(HDF5_SUPPORTS_PAR_FILTERS ON )
set(ENABLE_NCDUMPCHUNKS ON )
endif()
# Record if ROS3 Driver is available
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if(HAS_HDF5_ROS3)
set(ENABLE_HDF5_ROS3 ON )
endif()
IF (HDF5_SUPPORTS_PAR_FILTERS)
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set(HDF5_HAS_PAR_FILTERS TRUE CACHE BOOL "" )
set(HAS_PAR_FILTERS yes CACHE STRING "" )
else()
set(HDF5_HAS_PAR_FILTERS FALSE CACHE BOOL "" )
set(HAS_PAR_FILTERS no CACHE STRING "" )
endif()
set(HAVE_HDF5_H ${HDF5_C_INCLUDE_DIR})
target_include_directories(netcdf
PRIVATE
${HAVE_HDF5_H}
)
#option to include HDF5 High Level header file (hdf5_hl.h) in case we are not doing a make install
target_include_directories(netcdf
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PRIVATE
${HDF5_HL_INCLUDE_DIR}
)
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endif(USE_HDF5)
################################
# Curl
################################
# See if we have libcurl
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find_package(CURL)
target_compile_options(netcdf
PRIVATE
-DCURL_STATICLIB=1
)
target_include_directories(netcdf
PRIVATE
${CURL_INCLUDE_DIRS}
)
# Define a test flag for have curl library
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if(CURL_LIBRARIES OR CURL_LIBRARY)
set(FOUND_CURL TRUE)
else()
set(FOUND_CURL FALSE)
endif()
set(FOUND_CURL ${FOUND_CURL} TRUE )
# Start disabling if curl not found
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if(NOT FOUND_CURL)
message(WARNING "ENABLE_REMOTE_FUNCTIONALITY requires libcurl; disabling")
set(ENABLE_REMOTE_FUNCTIONALITY OFF CACHE BOOL "ENABLE_REMOTE_FUNCTIONALITY requires libcurl; disabling" FORCE )
endif()
set (CMAKE_REQUIRED_INCLUDES ${CURL_INCLUDE_DIRS})
# Check to see if we have libcurl 7.66 or later
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {
#if LIBCURL_VERSION_NUM < 0x074200
choke me;
#endif
}" HAVE_LIBCURL_766)
IF (HAVE_LIBCURL_766)
# If libcurl version is >= 7.66, then can skip tests
# for these symbols which were added in an earlier version
set(HAVE_CURLOPT_USERNAME TRUE)
set(HAVE_CURLOPT_PASSWORD TRUE)
set(HAVE_CURLOPT_KEYPASSWD TRUE)
set(HAVE_CURLINFO_RESPONSE_CODE TRUE)
set(HAVE_CURLINFO_HTTP_CONNECTCODE TRUE)
set(HAVE_CURLOPT_BUFFERSIZE TRUE)
set(HAVE_CURLOPT_KEEPALIVE TRUE)
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else()
# Check to see if CURLOPT_USERNAME is defined.
# It is present starting version 7.19.1.
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {int x = CURLOPT_USERNAME;}" HAVE_CURLOPT_USERNAME)
# Check to see if CURLOPT_PASSWORD is defined.
# It is present starting version 7.19.1.
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {int x = CURLOPT_PASSWORD;}" HAVE_CURLOPT_PASSWORD)
# Check to see if CURLOPT_KEYPASSWD is defined.
# It is present starting version 7.16.4.
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {int x = CURLOPT_KEYPASSWD;}" HAVE_CURLOPT_KEYPASSWD)
# Check to see if CURLINFO_RESPONSE_CODE is defined.
# It showed up in curl 7.10.7.
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {int x = CURLINFO_RESPONSE_CODE;}" HAVE_CURLINFO_RESPONSE_CODE)
# Check to see if CURLINFO_HTTP_CONNECTCODE is defined.
# It showed up in curl 7.10.7.
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {int x = CURLINFO_HTTP_CONNECTCODE;}" HAVE_CURLINFO_HTTP_CONNECTCODE)
# Check to see if CURLOPT_BUFFERSIZE is defined.
# It is present starting version 7.59
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {int x = CURLOPT_BUFFERSIZE;}" HAVE_CURLOPT_BUFFERSIZE)
# Check to see if CURLOPT_TCP_KEEPALIVE is defined.
# It is present starting version 7.25
CHECK_C_SOURCE_COMPILES("
#include <curl/curl.h>
int main() {int x = CURLOPT_TCP_KEEPALIVE;}" HAVE_CURLOPT_KEEPALIVE)
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endif()
################################
# Math
################################
# Check for the math library so it can be explicitly linked.
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if(NOT WIN32)
find_library(HAVE_LIBM NAMES math m libm)
if(NOT HAVE_LIBM)
CHECK_FUNCTION_EXISTS(exp HAVE_LIBM_FUNC)
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if(NOT HAVE_LIBM_FUNC)
message(FATAL_ERROR "Unable to find the math library.")
else(NOT HAVE_LIBM_FUNC)
set(HAVE_LIBM "")
endif()
else(NOT HAVE_LIBM)
message(STATUS "Found Math library: ${HAVE_LIBM}")
endif()
endif()
################################
# zlib
################################
# See if we have zlib
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find_package(ZLIB)
# Define a test flag for have zlib library
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if(ZLIB_FOUND)
target_include_directories(netcdf
PRIVATE
${ZLIB_INCLUDE_DIRS}
)
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set(ENABLE_ZLIB TRUE)
else()
set(ENABLE_ZLIB FALSE)
endif()
################################
# Zips
################################
IF (ENABLE_FILTER_SZIP)
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find_package(Szip)
elseif(ENABLE_NCZARR)
find_package(Szip)
endif()
IF (ENABLE_FILTER_BZ2)
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find_package(Bz2)
endif()
IF (ENABLE_FILTER_BLOSC)
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find_package(Blosc)
endif()
IF (ENABLE_FILTER_ZSTD)
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find_package(Zstd)
endif()
# Accumulate standard filters
set(STD_FILTERS "deflate") # Always have deflate*/
set_std_filter(Szip)
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set(HAVE_SZ ${Szip_FOUND})
set(USE_SZIP ${HAVE_SZ})
set_std_filter(Blosc)
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if(Zstd_FOUND)
set_std_filter(Zstd)
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set(HAVE_ZSTD ON)
endif()
if(Bz2_FOUND)
set_std_filter(Bz2)
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else()
# The reason we use a local version is to support a more comples test case
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message("libbz2 not found using built-in version")
set(HAVE_LOCAL_BZ2 ON)
set(HAVE_BZ2 ON CACHE BOOL "")
set(STD_FILTERS "${STD_FILTERS} bz2")
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endif()
IF (ENABLE_NCZARR_ZIP)
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find_package(Zip REQUIRED)
target_include_directories(netcdf
PRIVATE
${Zip_INCLUDE_DIRS}
)
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endif ()
################################
# S3
################################
# Note we check for the library after checking for enable_s3
# because for some reason this screws up if we unconditionally test for sdk
# and it is not available. Fix someday
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if(ENABLE_S3)
if(NOT ENABLE_S3_INTERNAL)
# See if aws-s3-sdk is available
find_package(AWSSDK REQUIRED COMPONENTS s3;transfer)
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if(AWSSDK_FOUND)
set(ENABLE_S3_AWS ON CACHE BOOL "S3 AWS" FORCE)
target_include_directories(netcdf
PRIVATE
${AWSSDK_INCLUDE_DIR}
)
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else(AWSSDK_FOUND)
set(ENABLE_S3_AWS OFF CACHE BOOL "S3 AWS" FORCE)
endif(AWSSDK_FOUND)
else(NOT ENABLE_S3_INTERNAL)
# Find crypto libraries required with testing with the internal s3 api.
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#find_library(SSL_LIB NAMES ssl openssl)
find_package(OpenSSL REQUIRED)
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if(NOT OpenSSL_FOUND)
message(FATAL_ERROR "Can't find an ssl library, required by S3_INTERNAL")
endif(NOT OpenSSL_FOUND)
#find_package(Crypto REQUIRED)
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#if(NOT CRYPTO_LIB)
# message(FATAL_ERROR "Can't find a crypto library, required by S3_INTERNAL")
#endif(NOT CRYPTO_LIB)
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endif(NOT ENABLE_S3_INTERNAL)
else()
set(ENABLE_S3_AWS OFF CACHE BOOL "S3 AWS" FORCE)
endif()
################################
# LibXML
################################
# see if we have libxml2
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if(ENABLE_LIBXML2)
find_package(LibXml2)
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if(LibXml2_FOUND)
set(HAVE_LIBXML2 TRUE)
target_include_directories(netcdf
PRIVATE
${LIBXML2_INCLUDE_DIRS}
)
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set(XMLPARSER "libxml2")
else()
set(HAVE_LIBXML2 FALSE)
endif()
endif(ENABLE_LIBXML2)
################################
# MPI
################################
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if(ENABLE_PARALLEL4 OR HDF5_PARALLEL)
find_package(MPI REQUIRED)
endif()
################################
# parallel IO
################################
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if(ENABLE_PNETCDF)
find_library(PNETCDF NAMES pnetcdf)
find_path(PNETCDF_INCLUDE_DIR pnetcdf.h)
if(NOT PNETCDF)
message(STATUS "Cannot find PnetCDF library. Disabling PnetCDF support.")
set(USE_PNETCDF OFF CACHE BOOL "")
endif()
endif()
################################
# Doxygen
################################
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if(ENABLE_DOXYGEN)
find_package(Doxygen REQUIRED)
endif()
################################
# NC_DPKG
################################
if (NETCDF_PACKAGE)
find_program(NC_DPKG NAMES dpkg)
endif()