2012-09-07 03:44:03 +08:00
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/*
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2019-08-10 01:13:55 +08:00
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* Copyright 2018, University Corporation for Atmospheric Research
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2012-09-07 03:44:03 +08:00
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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*/
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2019-08-10 01:13:55 +08:00
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/**
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* @file
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* @internal
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*
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* This file contains functions that work with the NC struct. There is
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* an NC struct for every open netCDF file.
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*
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* @author Glenn Davis
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*/
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2012-09-07 03:44:03 +08:00
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2017-03-09 08:01:10 +08:00
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#include "config.h"
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2012-09-07 03:44:03 +08:00
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#include <stdlib.h>
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#include <string.h>
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#include <assert.h>
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#if defined(LOCKNUMREC) /* && _CRAYMPP */
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# include <mpp/shmem.h>
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# include <intrinsics.h>
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#endif
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#ifdef HAVE_UNISTD_H
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#include <unistd.h>
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#endif
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#include "ncdispatch.h"
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2019-08-10 01:13:55 +08:00
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/** This is the default create format for nc_create and nc__create. */
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2012-09-07 03:44:03 +08:00
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static int default_create_format = NC_FORMAT_CLASSIC;
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2019-08-10 01:13:55 +08:00
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/**
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* Find the NC struct for an open file, using the ncid.
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*
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* @param ncid The ncid to find.
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* @param ncpp Pointer that gets a pointer to the NC.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID ncid not found.
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* @author Glenn Davis, Dennis Heimbigner
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*/
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2012-09-07 03:44:03 +08:00
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int
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NC_check_id(int ncid, NC** ncpp)
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{
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NC* nc = find_in_NCList(ncid);
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if(nc == NULL) return NC_EBADID;
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if(ncpp) *ncpp = nc;
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return NC_NOERR;
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}
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2019-08-10 01:13:55 +08:00
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/**
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* Free an NC struct and its related resources.
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*
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* @param ncp Pointer to the NC struct to be freed.
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*
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* @author Glenn Davis, Dennis Heimbigner
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*/
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2012-09-07 03:44:03 +08:00
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void
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free_NC(NC *ncp)
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{
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2012-12-12 07:51:05 +08:00
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if(ncp == NULL)
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2019-08-10 01:13:55 +08:00
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return;
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2012-12-12 07:51:05 +08:00
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if(ncp->path)
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2019-08-10 01:13:55 +08:00
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free(ncp->path);
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Provide byte-range reading of remote datasets
re: issue https://github.com/Unidata/netcdf-c/issues/1251
Assume that you have the URL to a remote dataset
which is a normal netcdf-3 or netcdf-4 file.
This PR allows the netcdf-c to read that dataset's
contents as a netcdf file using HTTP byte ranges
if the remote server supports byte-range access.
Originally, this PR was set up to access Amazon S3 objects,
but it can also access other remote datasets such as those
provided by a Thredds server via the HTTPServer access protocol.
It may also work for other kinds of servers.
Note that this is not intended as a true production
capability because, as is known, this kind of access to
can be quite slow. In addition, the byte-range IO drivers
do not currently do any sort of optimization or caching.
An additional goal here is to gain some experience with
the Amazon S3 REST protocol.
This architecture and its use documented in
the file docs/byterange.dox.
There are currently two test cases:
1. nc_test/tst_s3raw.c - this does a simple open, check format, close cycle
for a remote netcdf-3 file and a remote netcdf-4 file.
2. nc_test/test_s3raw.sh - this uses ncdump to investigate some remote
datasets.
This PR also incorporates significantly changed model inference code
(see the superceded PR https://github.com/Unidata/netcdf-c/pull/1259).
1. It centralizes the code that infers the dispatcher.
2. It adds support for byte-range URLs
Other changes:
1. NC_HDF5_finalize was not being properly called by nc_finalize().
2. Fix minor bug in ncgen3.l
3. fix memory leak in nc4info.c
4. add code to walk the .daprc triples and to replace protocol=
fragment tag with a more general mode= tag.
Final Note:
Th inference code is still way too complicated. We need to move
to the validfile() model used by netcdf Java, where each
dispatcher is asked if it can process the file. This decentralizes
the inference code. This will be done after all the major new
dispatchers (PIO, Zarr, etc) have been implemented.
2019-01-02 09:27:36 +08:00
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if(ncp->model)
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2019-08-10 01:13:55 +08:00
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free(ncp->model);
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2012-12-12 07:51:05 +08:00
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/* We assume caller has already cleaned up ncp->dispatchdata */
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2012-09-07 03:44:03 +08:00
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#if _CRAYMPP && defined(LOCKNUMREC)
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2012-12-12 07:51:05 +08:00
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shfree(ncp);
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2012-09-07 03:44:03 +08:00
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#else
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2012-12-12 07:51:05 +08:00
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free(ncp);
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2012-09-07 03:44:03 +08:00
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#endif /* _CRAYMPP && LOCKNUMREC */
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}
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2019-08-10 01:13:55 +08:00
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/**
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* Create and initialize a new NC struct. The ncid is assigned later.
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*
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* @param dispatcher
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* @param path The name of the file.
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* @param mode The open or create mode.
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* @param model
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* @param ncpp A pointer that gets a pointer to the newlly allocacted
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* and initialized NC struct.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_ENOMEM Out of memory.
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* @author Glenn Davis, Dennis Heimbigner
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*/
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2012-09-07 03:44:03 +08:00
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int
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2019-08-10 01:13:55 +08:00
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new_NC(const NC_Dispatch* dispatcher, const char* path, int mode,
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NCmodel* model, NC** ncpp)
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2012-09-07 03:44:03 +08:00
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{
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NC *ncp = (NC*)calloc(1,sizeof(NC));
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if(ncp == NULL) return NC_ENOMEM;
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ncp->dispatch = dispatcher;
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ncp->path = nulldup(path);
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2013-12-23 03:53:20 +08:00
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ncp->mode = mode;
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Provide byte-range reading of remote datasets
re: issue https://github.com/Unidata/netcdf-c/issues/1251
Assume that you have the URL to a remote dataset
which is a normal netcdf-3 or netcdf-4 file.
This PR allows the netcdf-c to read that dataset's
contents as a netcdf file using HTTP byte ranges
if the remote server supports byte-range access.
Originally, this PR was set up to access Amazon S3 objects,
but it can also access other remote datasets such as those
provided by a Thredds server via the HTTPServer access protocol.
It may also work for other kinds of servers.
Note that this is not intended as a true production
capability because, as is known, this kind of access to
can be quite slow. In addition, the byte-range IO drivers
do not currently do any sort of optimization or caching.
An additional goal here is to gain some experience with
the Amazon S3 REST protocol.
This architecture and its use documented in
the file docs/byterange.dox.
There are currently two test cases:
1. nc_test/tst_s3raw.c - this does a simple open, check format, close cycle
for a remote netcdf-3 file and a remote netcdf-4 file.
2. nc_test/test_s3raw.sh - this uses ncdump to investigate some remote
datasets.
This PR also incorporates significantly changed model inference code
(see the superceded PR https://github.com/Unidata/netcdf-c/pull/1259).
1. It centralizes the code that infers the dispatcher.
2. It adds support for byte-range URLs
Other changes:
1. NC_HDF5_finalize was not being properly called by nc_finalize().
2. Fix minor bug in ncgen3.l
3. fix memory leak in nc4info.c
4. add code to walk the .daprc triples and to replace protocol=
fragment tag with a more general mode= tag.
Final Note:
Th inference code is still way too complicated. We need to move
to the validfile() model used by netcdf Java, where each
dispatcher is asked if it can process the file. This decentralizes
the inference code. This will be done after all the major new
dispatchers (PIO, Zarr, etc) have been implemented.
2019-01-02 09:27:36 +08:00
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if((ncp->model = malloc(sizeof(NCmodel)))==NULL)
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2019-08-10 01:13:55 +08:00
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return NC_ENOMEM;
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Provide byte-range reading of remote datasets
re: issue https://github.com/Unidata/netcdf-c/issues/1251
Assume that you have the URL to a remote dataset
which is a normal netcdf-3 or netcdf-4 file.
This PR allows the netcdf-c to read that dataset's
contents as a netcdf file using HTTP byte ranges
if the remote server supports byte-range access.
Originally, this PR was set up to access Amazon S3 objects,
but it can also access other remote datasets such as those
provided by a Thredds server via the HTTPServer access protocol.
It may also work for other kinds of servers.
Note that this is not intended as a true production
capability because, as is known, this kind of access to
can be quite slow. In addition, the byte-range IO drivers
do not currently do any sort of optimization or caching.
An additional goal here is to gain some experience with
the Amazon S3 REST protocol.
This architecture and its use documented in
the file docs/byterange.dox.
There are currently two test cases:
1. nc_test/tst_s3raw.c - this does a simple open, check format, close cycle
for a remote netcdf-3 file and a remote netcdf-4 file.
2. nc_test/test_s3raw.sh - this uses ncdump to investigate some remote
datasets.
This PR also incorporates significantly changed model inference code
(see the superceded PR https://github.com/Unidata/netcdf-c/pull/1259).
1. It centralizes the code that infers the dispatcher.
2. It adds support for byte-range URLs
Other changes:
1. NC_HDF5_finalize was not being properly called by nc_finalize().
2. Fix minor bug in ncgen3.l
3. fix memory leak in nc4info.c
4. add code to walk the .daprc triples and to replace protocol=
fragment tag with a more general mode= tag.
Final Note:
Th inference code is still way too complicated. We need to move
to the validfile() model used by netcdf Java, where each
dispatcher is asked if it can process the file. This decentralizes
the inference code. This will be done after all the major new
dispatchers (PIO, Zarr, etc) have been implemented.
2019-01-02 09:27:36 +08:00
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*ncp->model = *model; /* Make a copy */
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2012-09-07 03:44:03 +08:00
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if(ncp->path == NULL) { /* fail */
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free_NC(ncp);
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2019-08-10 01:13:55 +08:00
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return NC_ENOMEM;
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2012-09-07 03:44:03 +08:00
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}
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2013-04-24 05:50:07 +08:00
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if(ncpp) {
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2019-08-10 01:13:55 +08:00
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*ncpp = ncp;
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2013-04-24 05:50:07 +08:00
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} else {
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2019-08-10 01:13:55 +08:00
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free_NC(ncp);
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2013-04-24 05:50:07 +08:00
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}
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2012-09-07 03:44:03 +08:00
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return NC_NOERR;
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}
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2019-08-10 01:13:55 +08:00
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/**
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* This function sets a default create flag that will be logically
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* or'd to whatever flags are passed into nc_create for all future
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* calls to nc_create.
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*
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* @param format The format that should become the default.
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* @param old_formatp Pointer that gets the previous default. Ignored
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* if NULL.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_ENOTBUILD Requested format not built with this install.
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* @return ::NC_EINVAL Invalid input.
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* @author Ed Hartnett, Dennis Heimbigner
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*/
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2012-09-07 03:44:03 +08:00
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int
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nc_set_default_format(int format, int *old_formatp)
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{
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/* Return existing format if desired. */
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if (old_formatp)
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2019-08-10 01:13:55 +08:00
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*old_formatp = default_create_format;
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2012-09-07 03:44:03 +08:00
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/* Make sure only valid format is set. */
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2018-09-17 10:39:10 +08:00
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#ifndef ENABLE_CDF5
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if (format == NC_FORMAT_CDF5)
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return NC_ENOTBUILT;
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#endif
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2018-12-01 22:29:58 +08:00
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#ifdef USE_HDF5
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2015-08-16 06:26:35 +08:00
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if (format != NC_FORMAT_CLASSIC && format != NC_FORMAT_64BIT_OFFSET &&
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format != NC_FORMAT_NETCDF4 && format != NC_FORMAT_NETCDF4_CLASSIC &&
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2019-08-10 01:13:55 +08:00
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format != NC_FORMAT_CDF5)
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2018-09-17 10:39:10 +08:00
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return NC_EINVAL;
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2018-07-28 15:49:07 +08:00
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#else
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2018-09-17 10:39:10 +08:00
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if (format == NC_FORMAT_NETCDF4 || format == NC_FORMAT_NETCDF4_CLASSIC)
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return NC_ENOTBUILT;
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2015-08-16 06:26:35 +08:00
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if (format != NC_FORMAT_CLASSIC && format != NC_FORMAT_64BIT_OFFSET &&
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format != NC_FORMAT_CDF5)
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2018-09-17 10:39:10 +08:00
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return NC_EINVAL;
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2018-07-28 15:49:07 +08:00
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#endif
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2012-09-07 03:44:03 +08:00
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default_create_format = format;
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return NC_NOERR;
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}
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2019-08-10 01:13:55 +08:00
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/**
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* Get the current default format.
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*
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* @return the default format.
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* @author Ed Hartnett
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*/
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2012-09-07 03:44:03 +08:00
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int
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nc_get_default_format(void)
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{
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return default_create_format;
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}
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