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netcdf-c/.github/workflows/run_tests_osx.yml

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Adding github actions.
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###
# Build hdf4, hdf5 dependencies and cache them in a combined directory.
# See https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners
# for information related to github runners.
###
Sorting out the reported syntax error.
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Avoid name collision in macOS tests.
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name: Run macOS-based netCDF Tests
Adding github actions.
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Add complete bitgroom support to NCZarr re: PR https://github.com/Unidata/netcdf-c/pull/2088 re: PR https://github.com/Unidata/netcdf-c/pull/2130 replaces: https://github.com/Unidata/netcdf-c/pull/2140 Changes: * Add NCZarr-specific quantize functions to the dispatch table. * Copy (modified) quantize code from libhdf5 to NCZarr * Add quantize invocation to zvar.c * Add support for _QuantizeBitgroomNumberOfSignificantDigits and _QuantizeGranularBitgroomNumberOfSignificantDigits to ncgen. * Modify nc_test4/tst_quantize.c to allow it to be used both for hdf5 and for nczarr. * Make dap4 properly handle quantize functions in dispatch table. * Add quantize attribute support to ncgen. Other changes: * Caught and fixed some S3 problems * Fixed some nczarr fillvalue problems. * Fixed some nczarr cache problems. * Cleanup some flaws in libdispatch/dinfermodel.c * Allow byterange requests to S3 be readable by dinfermodel.c/check_file_type * Remove the libnczarr ztracedispatch code (big change).
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on: [pull_request]
Adding github actions.
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jobs:
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build-deps-osx:
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runs-on: macos-11
strategy:
matrix:
hdf5: [ 1.12.1 ]
steps:
- uses: actions/checkout@v2
###
Installing autoconf tools
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# libhdf5
Adding github actions.
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###
Additional expansion of naming.
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- name: Cache libhdf5-${{ runner.os }}-${{ matrix.hdf5 }}
id: cache-hdf5-osx
Adding github actions.
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uses: actions/cache@v2
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
Additional expansion of naming.
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- name: Build libhdf5-${{ runner.os}}-${{ matrix.hdf5 }}
if: steps.cache-hdf5-osx.outputs.cache-hit != 'true'
Adding github actions.
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run: |
set -x
More scripting.
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set -e
Adding github actions.
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
pushd hdf5-${{ matrix.hdf5 }}
./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib
make -j
make install -j
popd
Renamed some of the job steps.
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nc-autotools-osx:
Adding github actions.
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Renamed some of the job steps.
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needs: [ nc-cmake-tests-oneoff-osx, nc-ac-tests-oneoff-osx ]
Renaming jobs to differentiate between Ubuntu and Linux jobs.
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runs-on: macos-11
Adding github actions.
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strategy:
matrix:
hdf5: [ 1.12.1 ]
#hdf5: [ 1.8.21, 1.10.1, 1.10.7, 1.12.1 ]
use_nc4: [ nc3, nc4 ]
use_dap: [ dap_off, dap_on ]
use_nczarr: [ nczarr_off, nczarr_on ]
steps:
- uses: actions/checkout@v2
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: |
echo "ENABLE_HDF4=--disable-hdf4" >> $GITHUB_ENV
echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc3'
- run: |
echo "ENABLE_HDF4=--enable-hdf4" >> $GITHUB_ENV
echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc4'
- run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_off'
- run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_on'
- run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_off'
- run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_on'
###
# Fetch Cache
###
- name: Fetch HDF Cache
More work on the OSX github actions.
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id: cache-hdf-osx
Adding github actions.
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uses: actions/cache@v2
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
More work on the OSX github actions.
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- name: Install autoconf
shell: bash -l {0}
run: brew install automake
Adding github actions.
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- name: Run autoconf
shell: bash -l {0}
run: autoreconf -if
- name: Configure
shell: bash -l {0}
Remove HDF4
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}
Adding github actions.
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if: ${{ success() }}
- name: Look at config.log if error
shell: bash -l {0}
run: cat config.log
if: ${{ failure() }}
- name: Print Summary
shell: bash -l {0}
run: cat libnetcdf.settings
- name: Build Library and Utilities
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
if: ${{ success() }}
- name: Build Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
if: ${{ success() }}
# - name: Make Distcheck
# shell: bash -l {0}
# run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} DISTCHECK_CONFIGURE_FLAGS="${ENABLE_HDF4} ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}" make distcheck
# if: ${{ success() }}
#- name: Start SSH Debug
# uses: luchihoratiu/debug-via-ssh@main
# with:
# NGROK_AUTH_TOKEN: ${{ secrets.NGROK_AUTH_TOKEN }}
# SSH_PASS: ${{ secrets.SSH_PASS }}
# if: ${{ failure() }}
Renamed some of the job steps.
2022-01-21 05:38:10 +08:00
nc-cmake-osx:
Adding github actions.
2022-01-21 05:27:47 +08:00
Renamed some of the job steps.
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needs: [ nc-cmake-tests-oneoff-osx, nc-ac-tests-oneoff-osx ]
Renaming jobs to differentiate between Ubuntu and Linux jobs.
2022-01-21 05:49:50 +08:00
runs-on: macos-11
Adding github actions.
2022-01-21 05:27:47 +08:00
strategy:
matrix:
Renamed some of the job steps.
2022-01-21 05:38:10 +08:00
hdf5: [ 1.12.1 ]
Adding github actions.
2022-01-21 05:27:47 +08:00
use_nc4: [ nc3, nc4 ]
use_dap: [ dap_off, dap_on ]
use_nczarr: [ nczarr_off, nczarr_on ]
steps:
- uses: actions/checkout@v2
###
# Set Environmental Variables
###
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: |
echo "ENABLE_HDF4=OFF" >> $GITHUB_ENV
echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc3'
- run: |
echo "ENABLE_HDF4=ON" >> $GITHUB_ENV
echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc4'
- run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_off'
- run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_on'
- run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_off'
- run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_on'
- run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
More work on the OSX github actions.
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id: cache-hdf5-osx
Adding github actions.
2022-01-21 05:27:47 +08:00
uses: actions/cache@v2
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Perform out-of-directory build
shell: bash -l {0}
run: |
mkdir build
cd build
Add a missing space.
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=${ENABLE_DAP} -DENABLE_HDF5=${ENABLE_HDF5} -DENABLE_NCZARR=${ENABLE_NCZARR}
Adding github actions.
2022-01-21 05:27:47 +08:00
- name: Print Summary
shell: bash -l {0}
run: |
cd build
cat libnetcdf.settings
- name: Build All
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --verbose -j 12 .
if: ${{ success() }}
- name: Verbose Output if CTest Failure
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
if: ${{ failure() }}
#####
# One-Off Autotools-based tests.
#####
Renamed some of the job steps.
2022-01-21 05:38:10 +08:00
nc-ac-tests-oneoff-osx:
Adding github actions.
2022-01-21 05:27:47 +08:00
Renaming jobs to differentiate between Ubuntu and Linux jobs.
2022-01-21 05:49:50 +08:00
needs: build-deps-osx
runs-on: macos-11
Adding github actions.
2022-01-21 05:27:47 +08:00
strategy:
matrix:
hdf5: [ 1.12.1 ]
steps:
- uses: actions/checkout@v2
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
More work on the OSX github actions.
2022-01-21 07:25:52 +08:00
id: cache-hdf-osx
Adding github actions.
2022-01-21 05:27:47 +08:00
uses: actions/cache@v2
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
Move autoconf installation stanza
2022-01-21 07:01:07 +08:00
- name: Install autoconf
shell: bash -l {0}
Cache automake install.
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run: brew install automake
Move autoconf installation stanza
2022-01-21 07:01:07 +08:00
Adding github actions.
2022-01-21 05:27:47 +08:00
- name: Run autoconf
shell: bash -l {0}
run: autoreconf -if
- name: Configure
shell: bash -l {0}
More scripting.
2022-01-21 06:57:32 +08:00
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests
Adding github actions.
2022-01-21 05:27:47 +08:00
if: ${{ success() }}
- name: Look at config.log if error
shell: bash -l {0}
run: cat config.log
if: ${{ failure() }}
- name: Print Summary
shell: bash -l {0}
run: cat libnetcdf.settings
- name: Build Library and Utilities
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
if: ${{ success() }}
- name: Build Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
if: ${{ success() }}
#####
# One-Off CMake-based tests.
#####
Renamed some of the job steps.
2022-01-21 05:38:10 +08:00
nc-cmake-tests-oneoff-osx:
Adding github actions.
2022-01-21 05:27:47 +08:00
Renaming jobs to differentiate between Ubuntu and Linux jobs.
2022-01-21 05:49:50 +08:00
needs: build-deps-osx
runs-on: macos-11
Adding github actions.
2022-01-21 05:27:47 +08:00
strategy:
matrix:
hdf5: [ 1.12.1 ]
steps:
- uses: actions/checkout@v2
###
# Set Environmental Variables
###
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
More work on the OSX github actions.
2022-01-21 07:25:52 +08:00
id: cache-hdf5-osx
Adding github actions.
2022-01-21 05:27:47 +08:00
uses: actions/cache@v2
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Perform out-of-directory build
shell: bash -l {0}
run: |
mkdir build
cd build
More scripting.
2022-01-21 06:57:32 +08:00
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -D ENABLE_DAP_LONG_TESTS=TRUE
Adding github actions.
2022-01-21 05:27:47 +08:00
- name: Print Summary
shell: bash -l {0}
run: |
cd build
cat libnetcdf.settings
- name: Build All
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 .
if: ${{ success() }}
- name: Verbose Output if CTest Failure
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
if: ${{ failure() }}
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