2023-10-25 00:15:25 +08:00
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###
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# Build hdf5 dependencies and cache them in a combined directory.
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###
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2023-10-25 00:18:58 +08:00
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name: Run CDash Ubuntu/Linux netCDF Tests
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2023-10-25 00:15:25 +08:00
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2023-10-25 01:46:21 +08:00
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on: workflow_dispatch
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2023-10-26 00:23:26 +08:00
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concurrency:
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group: ${{ github.workflow}}-${{ github.head_ref }}
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cancel-in-progress: true
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2023-10-25 00:15:25 +08:00
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jobs:
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build-deps-cdash:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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2024-02-16 19:18:19 +08:00
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hdf5: [ 1.10.8, 1.12.2, 1.14.3 ]
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2023-10-25 00:15:25 +08:00
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steps:
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2024-04-18 02:29:18 +08:00
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- uses: actions/checkout@v4
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2023-10-25 00:15:25 +08:00
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen openssl
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###
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# Installing libhdf5
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###
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- name: Cache libhdf5-${{ matrix.hdf5 }}
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id: cache-hdf5
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2024-04-18 02:29:18 +08:00
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uses: actions/cache@v4
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2023-10-25 00:15:25 +08:00
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Build libhdf5-${{ matrix.hdf5 }}
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if: steps.cache-hdf5.outputs.cache-hit != 'true'
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run: |
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set -x
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wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
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tar -jxf hdf-4.2.15.tar.bz2
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pushd hdf-4.2.15
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./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-hdf4-xdr
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make -j
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make install -j
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popd
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
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tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
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pushd hdf5-${{ matrix.hdf5 }}
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./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib
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make -j
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make install -j
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popd
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build-deps-parallel:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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2024-02-16 19:18:19 +08:00
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hdf5: [ 1.14.3 ]
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2023-10-25 00:15:25 +08:00
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steps:
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2024-04-18 02:29:18 +08:00
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- uses: actions/checkout@v4
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2023-10-25 00:15:25 +08:00
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev
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###
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# Installing libhdf5
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###
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- name: Cache libhdf5-parallel-${{ matrix.hdf5 }}
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id: cache-hdf5
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2024-04-18 02:29:18 +08:00
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uses: actions/cache@v4
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2023-10-25 00:15:25 +08:00
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3
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if: steps.cache-hdf5.outputs.cache-hit != 'true'
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run: |
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set -x
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wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
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tar -jxf hdf-4.2.15.tar.bz2
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pushd hdf-4.2.15
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CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel --enable-hdf4-xdr
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make -j
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make install -j
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popd
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
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tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
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pushd hdf5-${{ matrix.hdf5 }}
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CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel
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make -j
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make install -j
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popd
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wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz
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tar -zxf pnetcdf-1.12.3.tar.gz
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pushd pnetcdf-1.12.3
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CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}
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make -j
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make install -j
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popd
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2023-10-25 00:18:58 +08:00
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2023-10-25 00:15:25 +08:00
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###
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# Run CTest Serial Script
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###
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2023-10-25 00:28:51 +08:00
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nc-ctest-serial:
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needs: build-deps-cdash
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runs-on: ubuntu-latest
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environment: CDashCI
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strategy:
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matrix:
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2024-02-16 19:18:19 +08:00
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hdf5: [ 1.10.8, 1.12.2, 1.14.3 ]
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2023-10-25 00:51:20 +08:00
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2023-10-25 00:28:51 +08:00
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steps:
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2024-04-18 02:29:18 +08:00
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- uses: actions/checkout@v4
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2023-10-25 01:00:17 +08:00
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with:
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CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
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2023-10-25 01:25:02 +08:00
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env:
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CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
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2023-10-25 01:00:17 +08:00
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
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2023-10-25 00:28:51 +08:00
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2023-10-25 01:00:17 +08:00
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###
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# Set Environmental Variables
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###
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2023-10-25 00:28:51 +08:00
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2023-10-25 01:00:17 +08:00
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- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
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2023-10-25 00:48:51 +08:00
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2023-10-25 01:00:17 +08:00
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###
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# Fetch Cache
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###
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2023-10-25 00:15:25 +08:00
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2023-10-25 01:00:17 +08:00
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- name: Fetch HDF Cache
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id: cache-hdf5
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2024-04-18 02:29:18 +08:00
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uses: actions/cache@v4
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2023-10-25 01:00:17 +08:00
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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- name: Run ctest serial script
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shell: bash -l {0}
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2023-10-25 01:25:02 +08:00
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env:
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CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
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2023-10-25 01:00:17 +08:00
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run: |
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mkdir build
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 -V -S ../ctest_scripts/ctest_serial.ctest
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- name: Verbose Output if CTest Failure
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
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if: ${{ failure() }}
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