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netcdf-c/h5_test/tst_h_vars2.c

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whitespace cleanup of tst_h_vars2.c
2020-02-25 21:44:40 +08:00
/* This is part of the netCDF package. Copyright 2020 University
Corporation for Atmospheric Research/Unidata. See COPYRIGHT file
for conditions of use.
moving to trunk subdir
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whitespace cleanup of tst_h_vars2.c
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More tests for HDF5 datasets. These are not intended to be
moving to trunk subdir
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exhaustive tests, but they use HDF5 the same way that netCDF-4
does, so if these tests don't work, than netCDF-4 won't work
either.
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Ed Hartnett
moving to trunk subdir
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*/
changes in response to user feedback to rc1, plus cleaned up H5 test dependancy
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completely rewritten constraint system
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#include "h5_err_macros.h"
moving to trunk subdir
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#include <hdf5.h>
#include <H5DSpublic.h>
#define FILE_NAME "tst_h_vars2.h5"
changes in response to user feedback to rc1, plus cleaned up H5 test dependancy
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#define STR_LEN 255
moving to trunk subdir
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int
main()
{
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printf("\n*** Checking HDF5 variable functions some more.\n");
/* If HDF5 has working ordering of variables, then the following
* test will work.*/
printf("*** Checking HDF5 variable ordering...");
moving to trunk subdir
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#define NUM_ELEMENTS 6
#define MAX_SYMBOL_LEN 2
#define ELEMENTS_NAME "Elements"
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{
hid_t did[NUM_ELEMENTS], fapl_id, fcpl_id, gcpl_id;
hsize_t num_obj;
hid_t fileid, grpid, spaceid;
int i;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#if H5_VERSION_GE(1,12,0)
resolved conflict in tst_h_vars2.c
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H5O_info2_t obj_info;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#else
whitespace cleanup of tst_h_vars2.c
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H5O_info_t obj_info;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#endif
whitespace cleanup of tst_h_vars2.c
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char names[NUM_ELEMENTS][MAX_SYMBOL_LEN + 1] = {"H", "He", "Li", "Be", "B", "C"};
char name[MAX_SYMBOL_LEN + 1];
ssize_t size;
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
/* Create group, with link_creation_order set in the group
* creation property list. */
if ((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(gcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((grpid = H5Gcreate_anon(fileid, gcpl_id, H5P_DEFAULT)) < 0) ERR;
if ((H5Olink(grpid, fileid, ELEMENTS_NAME, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR;
/* Create a scalar space. */
if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR;
/* Create the variables, one per element. */
for (i = 0; i < NUM_ELEMENTS; i++)
{
if ((did[i] = H5Dcreate(grpid, names[i], H5T_NATIVE_INT,
spaceid, H5P_DEFAULT)) < 0) ERR;
if (H5Dclose(did[i]) < 0) ERR;
}
if (H5Pclose(fapl_id) < 0 ||
H5Pclose(gcpl_id) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
/* Now reopen the file and check the order. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, ELEMENTS_NAME)) < 0) ERR;
if (H5Gget_num_objs(grpid, &num_obj) < 0) ERR;
if (num_obj != NUM_ELEMENTS) ERR;
for (i = 0; i < num_obj; i++)
{
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#if H5_VERSION_GE(1,12,0)
resolved conflict in tst_h_vars2.c
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if (H5Oget_info_by_idx3(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
i, &obj_info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) ERR;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#else
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if (H5Oget_info_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
i, &obj_info, H5P_DEFAULT) < 0) ERR;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
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#endif
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if (obj_info.type != H5O_TYPE_DATASET) ERR;
if ((size = H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
NULL, 0, H5P_DEFAULT)) < 0) ERR;
H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
name, size+1, H5P_DEFAULT);
if (strcmp(name, names[i])) ERR;
}
if (H5Pclose(fapl_id) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
added storage to NC_VAR_INFO_T, removed unneeded test code
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whitespace cleanup of tst_h_vars2.c
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}
SUMMARIZE_ERR;
printf("*** Checking HDF5 variable ordering in root group...");
moving to trunk subdir
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#define NUM_DIMSCALES 2
#define MAX_SYMBOL_LEN 2
#define DIM1_LEN 3
#define DIMSCALE_NAME "Joe"
#define NAME_ATTRIBUTE "short"
whitespace cleanup of tst_h_vars2.c
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{
hid_t fapl_id, fcpl_id;
hid_t fileid, grpid;
hsize_t num_obj;
int i;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#if H5_VERSION_GE(1,12,0)
resolved conflict in tst_h_vars2.c
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H5O_info2_t obj_info;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#else
whitespace cleanup of tst_h_vars2.c
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H5O_info_t obj_info;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#endif
whitespace cleanup of tst_h_vars2.c
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char names[NUM_DIMSCALES][MAX_SYMBOL_LEN + 1] = {"b", "a"};
char name[MAX_SYMBOL_LEN + 1];
hid_t dimscaleid;
hid_t dimscale_spaceid;
hsize_t dimscale_dims[1] = {DIM1_LEN};
ssize_t size;
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
if ((dimscale_spaceid = H5Screate_simple(1, dimscale_dims,
dimscale_dims)) < 0) ERR;
/* Create the variables, one per element. */
for (i = 0; i < NUM_DIMSCALES; i++)
{
/* Create our dimension scale. Use the built-in NAME attribute
* on the dimscale. */
if ((dimscaleid = H5Dcreate(fileid, names[i], H5T_NATIVE_INT,
dimscale_spaceid, H5P_DEFAULT)) < 0) ERR;
if (H5DSset_scale(dimscaleid, NAME_ATTRIBUTE) < 0) ERR;
if (H5Dclose(dimscaleid) < 0) ERR;
}
if (H5Pclose(fapl_id) < 0 ||
H5Pclose(fcpl_id) < 0 ||
H5Sclose(dimscale_spaceid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
/* Now reopen the file and check the order. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
if (H5Gget_num_objs(grpid, &num_obj) < 0) ERR;
if (num_obj != NUM_DIMSCALES) ERR;
for (i = 0; i < num_obj; i++)
{
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#if H5_VERSION_GE(1,12,0)
resolved conflict in tst_h_vars2.c
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if (H5Oget_info_by_idx3(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
i, &obj_info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) ERR;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#else
whitespace cleanup of tst_h_vars2.c
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if (H5Oget_info_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
i, &obj_info, H5P_DEFAULT) < 0) ERR;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#endif
whitespace cleanup of tst_h_vars2.c
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if (obj_info.type != H5O_TYPE_DATASET) ERR;
if ((size = H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
NULL, 0, H5P_DEFAULT)) < 0) ERR;
if (H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
name, size+1, H5P_DEFAULT) < 0) ERR;
if (strcmp(name, names[i])) ERR;
}
if (H5Pclose(fapl_id) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
whitespace cleanup of tst_h_vars2.c
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}
SUMMARIZE_ERR;
printf("*** Checking HDF5 variable ordering flags with redef-type situations...");
moving to trunk subdir
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#define NUM_ELEMENTS 6
#define MAX_NAME_LEN 50
#define ELEMENTS_NAME "Elements"
#define VAR_NAME "Sears_Zemansky_and_Young"
whitespace cleanup of tst_h_vars2.c
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{
hid_t did, fapl_id, fcpl_id, gcpl_id, attid;
hsize_t num_obj;
hid_t fileid, grpid, spaceid;
float val = 3.1495;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#if H5_VERSION_GE(1,12,0)
resolved conflict in tst_h_vars2.c
2020-02-27 20:25:31 +08:00
H5O_info2_t obj_info;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#else
whitespace cleanup of tst_h_vars2.c
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H5O_info_t obj_info;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#endif
whitespace cleanup of tst_h_vars2.c
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char name[MAX_NAME_LEN + 1];
ssize_t size;
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
/* Create group, with link_creation_order set in the group
* creation property list. */
if ((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(gcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((grpid = H5Gcreate_anon(fileid, gcpl_id, H5P_DEFAULT)) < 0) ERR;
if ((H5Olink(grpid, fileid, ELEMENTS_NAME, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR;
/* Create a scalar space. */
if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR;
/* Create a scalar variable. */
if ((did = H5Dcreate(grpid, VAR_NAME, H5T_NATIVE_INT,
spaceid, H5P_DEFAULT)) < 0) ERR;
if (H5Dclose(did) < 0) ERR;
/* Flush the HDF5 buffers. */
H5Fflush(fileid, H5F_SCOPE_GLOBAL);
/* Delete the variable. Just to be mean. */
if (H5Gunlink(grpid, VAR_NAME) < 0) ERR;
/* Re-reate the scalar variable. */
if ((did = H5Dcreate(grpid, VAR_NAME, H5T_NATIVE_INT,
spaceid, H5P_DEFAULT)) < 0) ERR;
/* Add an attribute. */
if ((attid = H5Acreate(did, "Some_Attribute", H5T_NATIVE_FLOAT, spaceid,
H5P_DEFAULT)) < 0) ERR;
if (H5Awrite(attid, H5T_NATIVE_FLOAT, &val) < 0) ERR;
if (H5Aclose(attid) < 0) ERR;
if (H5Dclose(did) < 0) ERR;
if (H5Pclose(fapl_id) < 0 ||
H5Pclose(gcpl_id) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
/* Now reopen the file and check the order. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, ELEMENTS_NAME)) < 0) ERR;
if (H5Gget_num_objs(grpid, &num_obj) < 0) ERR;
if (num_obj != 1) ERR;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#if H5_VERSION_GE(1,12,0)
resolved conflict in tst_h_vars2.c
2020-02-27 20:25:31 +08:00
if (H5Oget_info_by_idx3(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
0, &obj_info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) ERR;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#else
whitespace cleanup of tst_h_vars2.c
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if (H5Oget_info_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
0, &obj_info, H5P_DEFAULT) < 0) ERR;
Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. Issue: build netcdf with hdf5-1.12.0 beta release fails in h5_test directory #1628
2020-02-21 06:55:33 +08:00
#endif
whitespace cleanup of tst_h_vars2.c
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if (obj_info.type != H5O_TYPE_DATASET) ERR;
if ((size = H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, 0,
NULL, 0, H5P_DEFAULT)) < 0) ERR;
H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, 0,
name, size+1, H5P_DEFAULT);
if (strcmp(name, VAR_NAME)) ERR;
if (H5Pclose(fapl_id) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
whitespace cleanup of tst_h_vars2.c
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}
SUMMARIZE_ERR;
printf("*** Checking HDF5 variable compession and filters...");
{
moving to trunk subdir
2010-06-03 21:24:43 +08:00
#define NUM_ELEMENTS 6
#define MAX_NAME_LEN 50
#define ELEMENTS_NAME "Elements"
#define VAR_NAME "Sears_Zemansky_and_Young"
#define NDIMS 2
#define NX 60
#define NY 120
#define DEFLATE_LEVEL 3
#define SIMPLE_VAR_NAME "data"
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
hid_t fapl_id, fcpl_id;
hid_t datasetid;
hid_t fileid, grpid, spaceid, plistid;
int data_in[NX][NY], data_out[NX][NY];
hsize_t fdims[NDIMS], fmaxdims[NDIMS];
hsize_t chunksize[NDIMS], dimsize[NDIMS], maxdimsize[NDIMS];
int x, y;
/* Create some data to write. */
for (x = 0; x < NX; x++)
for (y = 0; y < NY; y++)
data_out[x][y] = x * NY + y;
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
dimsize[0] = maxdimsize[0] = NX;
dimsize[1] = maxdimsize[1] = NY;
if ((spaceid = H5Screate_simple(NDIMS, dimsize, maxdimsize)) < 0) ERR;
/* Create property lust. */
if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR;
/* Set up chunksizes. */
chunksize[0] = NX;
chunksize[1] = NY;
if (H5Pset_chunk(plistid, NDIMS, chunksize) < 0)ERR;
/* Set up compression. */
if (H5Pset_deflate(plistid, DEFLATE_LEVEL) < 0) ERR;
/* Create the variable. */
if ((datasetid = H5Dcreate(grpid, SIMPLE_VAR_NAME, H5T_NATIVE_INT,
spaceid, plistid)) < 0) ERR;
/* Write the data. */
if (H5Dwrite(datasetid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
H5P_DEFAULT, data_out) < 0) ERR;
if (H5Dclose(datasetid) < 0) ERR;
if (H5Pclose(fapl_id) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
/* Now reopen the file and check the order. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
if ((datasetid = H5Dopen1(grpid, SIMPLE_VAR_NAME)) < 0) ERR;
if ((spaceid = H5Dget_space(datasetid)) < 0)
if (H5Sget_simple_extent_dims(spaceid, fdims, fmaxdims) > 0) ERR;
if (H5Dread(datasetid, H5T_NATIVE_INT, H5S_ALL,
spaceid, H5P_DEFAULT, data_in) < 0) ERR;
/* Check the data. */
for (x = 0; x < NX; x++)
for (y = 0; y < NY; y++)
if (data_in[x][y] != data_out[x][y]) ERR_RET;
if (H5Pclose(fapl_id) < 0 ||
H5Dclose(datasetid) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
whitespace cleanup of tst_h_vars2.c
2020-02-25 21:44:40 +08:00
}
SUMMARIZE_ERR;
printf("*** Checking fill value of compound type...");
moving to trunk subdir
2010-06-03 21:24:43 +08:00
whitespace cleanup of tst_h_vars2.c
2020-02-25 21:44:40 +08:00
{
moving to trunk subdir
2010-06-03 21:24:43 +08:00
#define VAR_NAME2 "obs"
#define REF_FILE "ref_tst_compounds.nc"
#define ATT_NAME "_FillValue"
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
typedef struct obs_t {
char day ;
short elev;
int count;
float relhum;
double time;
} obs_t ;
obs_t f1, f2;
obs_t m = {-99, -99, -99, -99, -99};
hid_t fileid, grpid, attid, typeid, datasetid, native_typeid, propid;
H5D_fill_value_t fill_status;
char file_in[STR_LEN * 2];
size_t type_size;
if (getenv("srcdir"))
{
strcpy(file_in, getenv("srcdir"));
strcat(file_in, "/");
strcat(file_in, REF_FILE);
}
else
strcpy(file_in, REF_FILE);
/* Open file and read fill value of the variable. */
if ((fileid = H5Fopen(file_in, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
if ((datasetid = H5Dopen1(grpid, VAR_NAME2)) < 0) ERR;
if ((propid = H5Dget_create_plist(datasetid)) < 0) ERR;
if (H5Pfill_value_defined(propid, &fill_status) < 0) ERR;
if (fill_status != H5D_FILL_VALUE_USER_DEFINED) ERR;
if ((typeid = H5Dget_type(datasetid)) < 0) ERR;
if ((native_typeid = H5Tget_native_type(typeid, H5T_DIR_DEFAULT)) < 0) ERR;
if (!(type_size = H5Tget_size(native_typeid))) ERR;
if (type_size != sizeof(obs_t)) ERR;
if (H5Pget_fill_value(propid, native_typeid, &f1) < 0) ERR;
if (f1.day != m.day || f1.elev != m.elev || f1.count != m.count ||
f1.relhum != m.relhum || f1.time != m.time) ERR;
/* It's also in an attribute, netCDF style. */
if ((attid = H5Aopen_name(datasetid, ATT_NAME)) < 0) ERR;
if ((typeid = H5Aget_type(attid)) < 0) ERR;
if ((native_typeid = H5Tget_native_type(typeid, H5T_DIR_DEFAULT)) < 0) ERR;
if (H5Aread(attid, native_typeid, &f2) < 0) ERR;
if (f2.day != m.day || f2.elev != m.elev || f2.count != m.count ||
f2.relhum != m.relhum || f2.time != m.time) ERR;
if (H5Dclose(datasetid) < 0 ||
H5Aclose(attid) < 0 ||
H5Tclose(native_typeid) < 0 ||
H5Tclose(typeid) < 0 ||
H5Pclose(propid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0) ERR;
whitespace cleanup of tst_h_vars2.c
2020-02-25 21:44:40 +08:00
}
SUMMARIZE_ERR;
printf("*** Checking HDF5 lots of datasets...");
{
moving to trunk subdir
2010-06-03 21:24:43 +08:00
#define NDIMS1 1
#define NUM_DATASETS 10000
#define CHUNKSIZE 1
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
hid_t fapl_id, fcpl_id;
hid_t datasetid[NUM_DATASETS];
hid_t fileid, grpid, spaceid, plistid;
hsize_t chunksize[NDIMS1], dimsize[NDIMS1], maxdimsize[NDIMS1];
char var_name[STR_LEN + 1];
int v;
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
/* Open root group. */
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
/* Create 1 D data space with unlimited dimension. */
dimsize[0] = 0;
maxdimsize[0] = H5S_UNLIMITED;
if ((spaceid = H5Screate_simple(NDIMS1, dimsize, maxdimsize)) < 0) ERR;
/* Create property list. */
if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR;
/* Set up chunksizes. */
chunksize[0] = CHUNKSIZE;
if (H5Pset_chunk(plistid, NDIMS1, chunksize) < 0)ERR;
/* Create the variables. */
for (v = 0; v < NUM_DATASETS; v++)
{
sprintf(var_name, "var_%d", v);
/* printf("creating var %s\n", var_name);*/
if ((datasetid[v] = H5Dcreate(grpid, var_name, H5T_NATIVE_INT,
spaceid, plistid)) < 0) ERR_RET;
}
/* Close the datasets. */
for (v = 0; v < NUM_DATASETS; v++)
if (H5Dclose(datasetid[v]) < 0) ERR_RET;
/* Close everything. */
if (H5Pclose(fapl_id) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
/* Now reopen the file and check. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
if (H5Pclose(fapl_id) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
whitespace cleanup of tst_h_vars2.c
2020-02-25 21:44:40 +08:00
}
SUMMARIZE_ERR;
fixed comments
2020-02-25 22:10:43 +08:00
printf("*** Checking that HDF5 does not allow scalar variable compession...");
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
#define MAX_NAME_LEN 50
#define DEFLATE_LEVEL 3
#define SIMPLE_VAR_NAME1 "punches"
{
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
hid_t fapl_id, fcpl_id;
hid_t datasetid;
hid_t fileid, grpid, spaceid, plistid;
hsize_t chunksize = 1;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
/* Create property list. */
if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
/* Set chunking. */
if (H5Pset_chunk(plistid, 1, &chunksize) < 0)ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
/* Set up compression. */
if (H5Pset_deflate(plistid, DEFLATE_LEVEL) < 0) ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
/* Turn off error messages. The next call will generate a
* bunch of error messages on the console. */
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
/* Create the variable. This will not work, because only
* chunked datasets can use filters, and scalars can't be
* chunked. The H5Dcreate() call will fail. */
if ((datasetid = H5Dcreate(grpid, SIMPLE_VAR_NAME1, H5T_NATIVE_INT,
spaceid, plistid)) > 0) ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
/* Turn on error messages back on. */
H5Eset_auto2(H5E_DEFAULT, (H5E_auto2_t)&H5Eprint, stderr);
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
if (H5Pclose(fapl_id) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
refurbishing old test that was commented out
2020-02-25 22:07:58 +08:00
}
SUMMARIZE_ERR;
test demonstrating HDF5 use of compact scalar dataset
2020-02-25 22:23:27 +08:00
printf("*** Checking HDF5 scalar compact dataset...");
{
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
hid_t fapl_id, fcpl_id;
hid_t datasetid;
hid_t fileid, grpid, spaceid, plistid;
hid_t propid;
int data_in, data_out = 42;
H5D_layout_t layout;
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR;
/* Create property lust. */
if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR;
if (H5Pset_layout(plistid, H5D_COMPACT) < 0)ERR;
/* Create the variable. */
if ((datasetid = H5Dcreate(grpid, SIMPLE_VAR_NAME1, H5T_NATIVE_INT,
spaceid, plistid)) < 0) ERR;
/* Write the data. */
if (H5Dwrite(datasetid, H5T_NATIVE_INT, spaceid, spaceid,
H5P_DEFAULT, &data_out) < 0) ERR;
if ((layout = H5Pget_layout(plistid)) < 0) ERR;
if (layout != H5D_COMPACT) ERR;
if (H5Pclose(fapl_id) < 0 ||
H5Dclose(datasetid) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
/* Now reopen the file and check. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
if ((datasetid = H5Dopen1(grpid, SIMPLE_VAR_NAME1)) < 0) ERR;
if ((spaceid = H5Dget_space(datasetid)) < 0) ERR;
if ((propid = H5Dget_create_plist(datasetid)) < 0) ERR;
if ((layout = H5Pget_layout(propid)) < 0) ERR;
if (layout != H5D_COMPACT) ERR;
if (H5Dread(datasetid, H5T_NATIVE_INT, H5S_ALL,
spaceid, H5P_DEFAULT, &data_in) < 0) ERR;
/* Check the data. */
if (data_in != data_out) ERR;
if (H5Pclose(fapl_id) < 0 ||
H5Dclose(datasetid) < 0 ||
H5Pclose(propid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
test demonstrating HDF5 use of compact scalar dataset
2020-02-25 22:23:27 +08:00
}
SUMMARIZE_ERR;
more tests for compact storage
2020-02-26 04:30:38 +08:00
printf("*** Checking that HDF5 does not allow chunked, scalar datasets...");
{
added storage to NC_VAR_INFO_T, removed unneeded test code
2020-03-07 20:08:12 +08:00
hid_t fapl_id, fcpl_id;
hid_t datasetid;
hid_t fileid, grpid, spaceid, plistid;
hsize_t chunksize = 1;
/* Create file, setting latest_format in access propertly list
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR;
/* Create property list. */
if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR;
/* Set chunking. */
if (H5Pset_chunk(plistid, 1, &chunksize) < 0)ERR;
/* Turn off error messages. The next call will generate a
* bunch of error messages on the console. */
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
/* Create the variable. This will not work, because only
* chunked datasets can use filters, and scalars can't be
* chunked. The H5Dcreate() call will fail. */
if ((datasetid = H5Dcreate(grpid, SIMPLE_VAR_NAME1, H5T_NATIVE_INT,
spaceid, plistid)) > 0) ERR;
/* Turn on error messages back on. */
H5Eset_auto2(H5E_DEFAULT, (H5E_auto2_t)&H5Eprint, stderr);
if (H5Pclose(fapl_id) < 0 ||
H5Sclose(spaceid) < 0 ||
H5Gclose(grpid) < 0 ||
H5Fclose(fileid) < 0)
ERR;
more tests for compact storage
2020-02-26 04:30:38 +08:00
}
SUMMARIZE_ERR;
whitespace cleanup of tst_h_vars2.c
2020-02-25 21:44:40 +08:00
FINAL_RESULTS;
moving to trunk subdir
2010-06-03 21:24:43 +08:00
}
Reference in New Issue Copy Permalink