netcdf-c/.github/workflows/run_tests_ubuntu.yml

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###
# Build hdf5 dependencies and cache them in a combined directory.
###
name: Run Ubuntu/Linux netCDF Tests
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on: [pull_request, workflow_dispatch]
jobs:
build-deps-serial:
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
Improve S3 Documentation and Support ## Improvements to S3 Documentation * Create a new document *quickstart_paths.md* that give a summary of the legal path formats used by netcdf-c. This includes both file paths and URL paths. * Modify *nczarr.md* to remove most of the S3 related text. * Move the S3 text from *nczarr.md* to a new document *cloud.md*. * Add some S3-related text to the *byterange.md* document. Hopefully, this will make it easier for users to find the information they want. ## Rebuild NCZarr Testing In order to avoid problems with running make check in parallel, two changes were made: 1. The *nczarr_test* test system was rebuilt. Now, for each test. any generated files are kept in a test-specific directory, isolated from all other test executions. 2. Similarly, since the S3 test bucket is shared, any generated S3 objects are isolated using a test-specific key path. ## Other S3 Related Changes * Add code to ensure that files created on S3 are reclaimed at end of testing. * Used the bash "trap" command to ensure S3 cleanup even if the test fails. * Cleanup the S3 related configure.ac flag set since S3 is used in several places. So now one should use the option *--enable-s3* instead of *--enable-nczarr-s3*, although the latter is still kept as a deprecated alias for the former. * Get some of the github actions yml to work with S3; required fixing various test scripts adding a secret to access the Unidata S3 bucket. * Cleanup S3 portion of libnetcdf.settings.in and netcdf_meta.h.in and test_common.in. * Merge partial S3 support into dhttp.c. * Create an experimental s3 access library especially for use with Windows. It is enabled by using the options *--enable-s3-internal* (automake) or *-DENABLE_S3_INTERNAL=ON* (CMake). Also add a unit-test for it. * Move some definitions from ncrc.h to ncs3sdk.h ## Other Changes * Provide a default implementation of strlcpy and move this and similar defaults into *dmissing.c*.
2023-04-26 07:15:06 +08:00
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen openssl
###
# Installing libhdf5
###
- name: Cache libhdf5-${{ matrix.hdf5 }}
id: cache-hdf5
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Build libhdf5-${{ matrix.hdf5 }}
if: steps.cache-hdf5.outputs.cache-hit != 'true'
run: |
set -x
wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
tar -jxf hdf-4.2.15.tar.bz2
pushd hdf-4.2.15
./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-hdf4-xdr
make -j
make install -j
popd
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
pushd hdf5-${{ matrix.hdf5 }}
./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib
make -j
make install -j
popd
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build-deps-parallel:
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [ 1.14.0 ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev
###
# Installing libhdf5
###
- name: Cache libhdf5-parallel-${{ matrix.hdf5 }}
id: cache-hdf5
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3
if: steps.cache-hdf5.outputs.cache-hit != 'true'
run: |
set -x
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wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
tar -jxf hdf-4.2.15.tar.bz2
pushd hdf-4.2.15
CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel --enable-hdf4-xdr
make -j
make install -j
popd
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
pushd hdf5-${{ matrix.hdf5 }}
CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel
make -j
make install -j
popd
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wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz
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tar -zxf pnetcdf-1.12.3.tar.gz
pushd pnetcdf-1.12.3
CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}
make -j
make install -j
popd
#####
# One-Off Autotools-based tests.
#####
##
# Serial
##
nc-ac-tests-oneoff-serial:
needs: build-deps-serial
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [ 1.14.0 ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Run autoconf
shell: bash -l {0}
run: autoreconf -if
- name: Configure
shell: bash -l {0}
Improve S3 Documentation and Support ## Improvements to S3 Documentation * Create a new document *quickstart_paths.md* that give a summary of the legal path formats used by netcdf-c. This includes both file paths and URL paths. * Modify *nczarr.md* to remove most of the S3 related text. * Move the S3 text from *nczarr.md* to a new document *cloud.md*. * Add some S3-related text to the *byterange.md* document. Hopefully, this will make it easier for users to find the information they want. ## Rebuild NCZarr Testing In order to avoid problems with running make check in parallel, two changes were made: 1. The *nczarr_test* test system was rebuilt. Now, for each test. any generated files are kept in a test-specific directory, isolated from all other test executions. 2. Similarly, since the S3 test bucket is shared, any generated S3 objects are isolated using a test-specific key path. ## Other S3 Related Changes * Add code to ensure that files created on S3 are reclaimed at end of testing. * Used the bash "trap" command to ensure S3 cleanup even if the test fails. * Cleanup the S3 related configure.ac flag set since S3 is used in several places. So now one should use the option *--enable-s3* instead of *--enable-nczarr-s3*, although the latter is still kept as a deprecated alias for the former. * Get some of the github actions yml to work with S3; required fixing various test scripts adding a secret to access the Unidata S3 bucket. * Cleanup S3 portion of libnetcdf.settings.in and netcdf_meta.h.in and test_common.in. * Merge partial S3 support into dhttp.c. * Create an experimental s3 access library especially for use with Windows. It is enabled by using the options *--enable-s3-internal* (automake) or *-DENABLE_S3_INTERNAL=ON* (CMake). Also add a unit-test for it. * Move some definitions from ncrc.h to ncs3sdk.h ## Other Changes * Provide a default implementation of strlcpy and move this and similar defaults into *dmissing.c*.
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-doxygen --enable-external-server-tests --enable-s3 --enable-s3-internal --enable-nczarr-s3-tests
if: ${{ success() }}
- name: Look at config.log if error
shell: bash -l {0}
run: cat config.log
if: ${{ failure() }}
- name: Print Summary
shell: bash -l {0}
run: cat libnetcdf.settings
- name: Build Library and Utilities
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
if: ${{ success() }}
- name: Build Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
Improve S3 Documentation and Support ## Improvements to S3 Documentation * Create a new document *quickstart_paths.md* that give a summary of the legal path formats used by netcdf-c. This includes both file paths and URL paths. * Modify *nczarr.md* to remove most of the S3 related text. * Move the S3 text from *nczarr.md* to a new document *cloud.md*. * Add some S3-related text to the *byterange.md* document. Hopefully, this will make it easier for users to find the information they want. ## Rebuild NCZarr Testing In order to avoid problems with running make check in parallel, two changes were made: 1. The *nczarr_test* test system was rebuilt. Now, for each test. any generated files are kept in a test-specific directory, isolated from all other test executions. 2. Similarly, since the S3 test bucket is shared, any generated S3 objects are isolated using a test-specific key path. ## Other S3 Related Changes * Add code to ensure that files created on S3 are reclaimed at end of testing. * Used the bash "trap" command to ensure S3 cleanup even if the test fails. * Cleanup the S3 related configure.ac flag set since S3 is used in several places. So now one should use the option *--enable-s3* instead of *--enable-nczarr-s3*, although the latter is still kept as a deprecated alias for the former. * Get some of the github actions yml to work with S3; required fixing various test scripts adding a secret to access the Unidata S3 bucket. * Cleanup S3 portion of libnetcdf.settings.in and netcdf_meta.h.in and test_common.in. * Merge partial S3 support into dhttp.c. * Create an experimental s3 access library especially for use with Windows. It is enabled by using the options *--enable-s3-internal* (automake) or *-DENABLE_S3_INTERNAL=ON* (CMake). Also add a unit-test for it. * Move some definitions from ncrc.h to ncs3sdk.h ## Other Changes * Provide a default implementation of strlcpy and move this and similar defaults into *dmissing.c*.
2023-04-26 07:15:06 +08:00
env:
AWS_PROFILE: ${{ secrets.DEFAULT_PROFILE }}
run: |
mkdir -p ~/.aws
echo "" > ~/.aws/config
chmod go-rwx ~/.aws/config
echo "${AWS_PROFILE}" >> ~/.aws/config
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
if: ${{ success() }}
##
# Parallel
##
nc-ac-tests-oneoff-parallel:
needs: build-deps-parallel
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [ 1.14.0 ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- name: Fetch HDF Cache
id: cache-hdf
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Run autoconf
shell: bash -l {0}
run: autoreconf -if
- name: Configure
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-parallel-tests --enable-pnetcdf
if: ${{ success() }}
- name: Look at config.log if error
shell: bash -l {0}
run: cat config.log
if: ${{ failure() }}
- name: Print Summary
shell: bash -l {0}
run: cat libnetcdf.settings
- name: Build Library and Utilities
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make -j
if: ${{ success() }}
- name: Build Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check TESTS="" -j
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check -j
if: ${{ success() }}
#####
# One-Off CMake-based tests.
#####
##
# Serial
##
nc-cmake-tests-oneoff-serial:
needs: build-deps-serial
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [ 1.14.0 ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
2022-06-07 20:40:24 +08:00
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen
###
# Set Environmental Variables
###
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf5
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Perform out-of-directory build
shell: bash -l {0}
run: |
mkdir build
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -D ENABLE_DAP_LONG_TESTS=TRUE
- name: Print Summary
shell: bash -l {0}
run: |
cd build
cat libnetcdf.settings
- name: Build All
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 .
if: ${{ success() }}
- name: Verbose Output if CTest Failure
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
if: ${{ failure() }}
##
# Parallel
##
nc-cmake-tests-oneoff-parallel:
needs: build-deps-parallel
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [ 1.14.0 ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen mpich libmpich-dev
###
# Set Environmental Variables
###
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf5
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Perform out-of-directory build
shell: bash -l {0}
run: |
mkdir build
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_C_COMPILER=mpicc -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -D ENABLE_DAP_LONG_TESTS=TRUE -DENABLE_PNETCDF=TRUE
- name: Print Summary
shell: bash -l {0}
run: |
cd build
cat libnetcdf.settings
- name: Build All
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 .
if: ${{ success() }}
- name: Verbose Output if CTest Failure
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
if: ${{ failure() }}
nc-autotools:
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needs: [ nc-cmake-tests-oneoff-serial, nc-ac-tests-oneoff-serial, nc-cmake-tests-oneoff-parallel, nc-ac-tests-oneoff-parallel ]
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [1.10.8, 1.12.2, 1.14.0 ]
use_nc4: [ nc3, nc4 ]
use_dap: [ dap_off, dap_on ]
use_nczarr: [ nczarr_off, nczarr_on ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: |
echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc3'
- run: |
echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc4'
- run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_off'
- run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_on'
- run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_off'
- run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_on'
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Run autoconf
shell: bash -l {0}
run: autoreconf -if
- name: Configure
shell: bash -l {0}
run: |
current_directory="$(pwd)"
mkdir ../build
cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} "${current_directory}/configure" ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}
if: ${{ success() }}
- name: Look at config.log if error
shell: bash -l {0}
run: cd ../build && cat config.log
if: ${{ failure() }}
- name: Print Summary
shell: bash -l {0}
run: cd ../build && cat libnetcdf.settings
- name: Build Library and Utilities
shell: bash -l {0}
run: |
cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
if: ${{ success() }}
- name: Build Tests
shell: bash -l {0}
run: |
cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: |
cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
if: ${{ success() }}
nc-cmake:
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needs: [ nc-cmake-tests-oneoff-serial, nc-ac-tests-oneoff-serial, nc-cmake-tests-oneoff-parallel, nc-ac-tests-oneoff-parallel ]
runs-on: ubuntu-latest
strategy:
matrix:
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hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
use_nc4: [ nc3, nc4 ]
use_dap: [ dap_off, dap_on ]
use_nczarr: [ nczarr_off, nczarr_on ]
steps:
- uses: actions/checkout@v3
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
###
# Set Environmental Variables
###
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
- run: |
echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc3'
- run: |
echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
if: matrix.use_nc4 == 'nc4'
- run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_off'
- run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
if: matrix.use_dap == 'dap_on'
- run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_off'
- run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
if: matrix.use_nczarr == 'nczarr_on'
- run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf5
uses: actions/cache@v3
with:
path: ~/environments/${{ matrix.hdf5 }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
- name: Check Cache
shell: bash -l {0}
2023-04-05 04:28:32 +08:00
run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
###
# Configure and build
###
- name: Perform out-of-directory build
shell: bash -l {0}
run: |
mkdir build
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=${ENABLE_DAP} -DENABLE_HDF5=${ENABLE_HDF5} -DENABLE_NCZARR=${ENABLE_NCZARR}
- name: Print Summary
shell: bash -l {0}
run: |
cd build
cat libnetcdf.settings
- name: Build All
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --verbose -j 12 .
if: ${{ success() }}
- name: Verbose Output if CTest Failure
shell: bash -l {0}
run: |
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
if: ${{ failure() }}