netcdf-c/cf

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#!/bin/bash
2012-05-05 01:32:14 +08:00
#NB=1
DB=1
2015-08-16 06:26:35 +08:00
#X=-x
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
FAST=1
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
HDF5=1
DAP=1
2017-08-28 10:38:37 +08:00
SZIP=1
#HDF4=1
re e-support UBS-599337 re pull request https://github.com/Unidata/netcdf-c/pull/405 re pull request https://github.com/Unidata/netcdf-c/pull/446 Notes: 1. This branch is a cleanup of the magic.dmh branch. 2. magic.dmh was originally merged, but caused problems with parallel IO. It was re-issued as pull request https://github.com/Unidata/netcdf-c/pull/446. 3. This branch + pull request replace any previous pull requests and magic.dmh branch. Given an otherwise valid netCDF file that has a corrupted header, the netcdf library currently crashes. Instead, it should return NC_ENOTNC. Additionally, the NC_check_file_type code does not do the forward search required by hdf5 files. It currently only looks at file position 0 instead of 512, 1024, 2048,... Also, it turns out that the HDF4 magic number is assumed to always be at the beginning of the file (unlike HDF5). The change is localized to libdispatch/dfile.c See https://support.hdfgroup.org/release4/doc/DSpec_html/DS.pdf Also, it turns out that the code in NC_check_file_type is duplicated (mostly) in the function libsrc4/nc4file.c#nc_check_for_hdf. This branch does the following. 1. Make NC_check_file_type return NC_ENOTNC instead of crashing. 2. Remove nc_check_for_hdf and centralize all file format checking NC_check_file_type. 3. Add proper forward search for HDF5 files (but not HDF4 files) to look for the magic number at offsets of 0, 512, 1024... 4. Add test tst_hdf5_offset.sh. This tests that hdf5 files with an offset are properly recognized. It does so by prefixing a legal file with some number of zero bytes: 512, 1024, etc. 5. Off-topic: Added -N flag to ncdump to force a specific output dataset name.
2017-10-25 06:25:09 +08:00
PNETCDF=1
2015-08-17 11:44:18 +08:00
#PAR4=1
2015-10-12 03:35:44 +08:00
if test $# != 0 ; then
cmds=$@
fi
if test "x$PNETCDF" = x1 -o "x$PAR4" = x1 ; then
MPIO=1
fi
CFLAGS=""
2015-08-16 06:26:35 +08:00
#CFLAGS="-Wall -Wno-unused-but-set-variable -Wno-unused-variable -Wno-unused-parameter -Wconversion ${CFLAGS}"
CFLAGS="-Wall -Wno-unused-but-set-variable -Wno-unused-variable -Wno-unused-parameter -Wno-char-subscripts -Wno-pointer-sign -Wno-format ${CFLAGS}"
2015-08-16 06:26:35 +08:00
#CFLAGS="-Wall ${CFLAGS}"
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#CFLAGS="-Wconversion"
stddir="/usr/local"
PREFIX=/usr/local
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if test "x${cmds}" = x ; then
cmds=""
else
for f in $cmds ; do
if test "x$f" = "xdistcheck" ; then
PREFIX=/tmp/$HOST
fi
done
fi
2013-03-26 00:29:19 +08:00
# HDF4=>HDF5
if test "x$HDF4" = x1 ; then
HDF5=1
fi
# !HDF5=>!SZIP
if test "x$HDF5" != x1 ; then
SZIP=0
fi
CC=gcc
2012-02-16 03:15:03 +08:00
MALLOC_CHECK=""
CPPFLAGS=""
LDFLAGS=""
CFLAGS="-g -O0 $CFLAGS -Wno-undefined"
MAKE=make
IGNORE="test 0 = 1"
if test "x$HDF5" = "x1" ; then
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CPPFLAGS="-I${stddir}/include $CPPFLAGS"
LDFLAGS="-L${stddir}/lib -lhdf5_hl -lhdf5 -lz $LDFLAGS"
LD_LIBRARY_PATH="${stddir}/lib:$LD_LIBRARY_PATH"
fi
if test "x$HDF4" = "x1" ; then
LDFLAGS="$LDFLAGS -ljpeg"
fi
2013-03-26 00:29:19 +08:00
2017-08-28 10:38:37 +08:00
if test "x$SZIP" = "x1" ; then
LDFLAGS="$LDFLAGS -lsz -laec"
fi
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
export PKG_CONFIG_PATH=/usr/lib/pkgconfig
if test "x$DAP" = "x1" ; then
if curl-config --version >/dev/null ; then
TMP=`curl-config --cflags`
CPPFLAGS="$TMP $CPPFLAGS"
TMP=`curl-config --libs`
LDFLAGS="$TMP $LDFLAGS"
TMP=`curl-config --prefix`
LD_LIBRARY_PATH="$TMP/lib:$LD_LIBRARY_PATH"
else
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
LDFLAGS="${LDFLAGS} -lcurl"
fi
fi
2013-01-18 10:25:12 +08:00
CXXFLAGS="$CPPFLAGS $CXXFLAGS"
FLAGS="--prefix ${PREFIX}"
2011-09-02 06:32:28 +08:00
#FLAGS="$FLAGS --disable-f77 --disable-f90"
#FLAGS="$FLAGS --disable-cxx"
FLAGS="$FLAGS --disable-examples"
#FLAGS="$FLAGS --disable-utilities"
#FLAGS="$FLAGS --enable-cxx-4"
#FLAGS="$FLAGS --enable-dap-long-tests"
#FLAGS="$FLAGS --enable-ffio"
2012-04-02 04:15:06 +08:00
#FLAGS="$FLAGS --enable-benchmarks"
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
FLAGS="$FLAGS --enable-extreme-numbers"
FLAGS="$FLAGS --enable-extra-tests"
#FLAGS="$FLAGS --enable-large-file-tests"
#FLAGS="$FLAGS --disable-testsets"
#FLAGS="$FLAGS --disable-dap-remote-tests"
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
#FLAGS="$FLAGS --enable-dap-auth-tests" -- requires a new remotetest server
#FLAGS="$FLAGS --enable-doxygen --enable-internal-docs"
FLAGS="$FLAGS --enable-logging"
#FLAGS="$FLAGS --disable-diskless"
2012-06-24 03:25:49 +08:00
#FLAGS="$FLAGS --enable-mmap"
#FLAGS="$FLAGS --with-udunits"
#FLAGS="$FLAGS --with-libcf"
#valgrind => not shared
2012-08-02 01:18:58 +08:00
#FLAGS="$FLAGS --enable-valgrind-tests"
#FLAGS="$FLAGS --enable-jna"
#FLAGS="$FLAGS --disable-properties-attribute"
#FLAGS="$FLAGS --disable-silent-rules"
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
#FLAGS="$FLAGS --with-testservers=remotestserver.localhost:8083"
FLAGS="$FLAGS --enable-filter-test"
2015-08-16 06:26:35 +08:00
if test "x$PAR4" != x1 ; then
FLAGS="$FLAGS --disable-parallel4"
fi
if test "x${DB}" = x1 ; then
FLAGS="$FLAGS --disable-shared --enable-static"
else
FLAGS="$FLAGS --enable-shared"
fi
#TMP=
#rm -f ./test_mpi.tmp
#if test -f $stddir/lib/libhdf5.a ; then
# nm $stddir/lib/libhdf5.a | grep mpich_mpi_float$ >./test_mpi.tmp
#else
# if test -f $stddir/lib/libhdf5.so ; then
# nm $stddir/lib/libhdf5.so | grep mpich_mpi_float$ >./test_mpi.tmp
# fi
#fi
#if test -s ./test_mpi.tmp ; then
# PAR=1
#fi
#rm -f ./test_mpi.tmp
2015-09-13 06:41:14 +08:00
if test "x${PAR}" != x ; then
FLAGS="$FLAGS --enable-parallel"
fi
if test "x$HDF5" = "x" ; then
FLAGS="$FLAGS --disable-netcdf-4"
fi
2013-03-26 00:29:19 +08:00
if test "x$HDF4" = x1 ; then
FLAGS="$FLAGS --enable-hdf4 --enable-hdf4-file-tests"
fi
if test "x$DAP" = "x" ; then
FLAGS="$FLAGS --disable-dap"
fi
if test "x$MPIO" = x1 ; then
re e-support UBS-599337 re pull request https://github.com/Unidata/netcdf-c/pull/405 re pull request https://github.com/Unidata/netcdf-c/pull/446 Notes: 1. This branch is a cleanup of the magic.dmh branch. 2. magic.dmh was originally merged, but caused problems with parallel IO. It was re-issued as pull request https://github.com/Unidata/netcdf-c/pull/446. 3. This branch + pull request replace any previous pull requests and magic.dmh branch. Given an otherwise valid netCDF file that has a corrupted header, the netcdf library currently crashes. Instead, it should return NC_ENOTNC. Additionally, the NC_check_file_type code does not do the forward search required by hdf5 files. It currently only looks at file position 0 instead of 512, 1024, 2048,... Also, it turns out that the HDF4 magic number is assumed to always be at the beginning of the file (unlike HDF5). The change is localized to libdispatch/dfile.c See https://support.hdfgroup.org/release4/doc/DSpec_html/DS.pdf Also, it turns out that the code in NC_check_file_type is duplicated (mostly) in the function libsrc4/nc4file.c#nc_check_for_hdf. This branch does the following. 1. Make NC_check_file_type return NC_ENOTNC instead of crashing. 2. Remove nc_check_for_hdf and centralize all file format checking NC_check_file_type. 3. Add proper forward search for HDF5 files (but not HDF4 files) to look for the magic number at offsets of 0, 512, 1024... 4. Add test tst_hdf5_offset.sh. This tests that hdf5 files with an offset are properly recognized. It does so by prefixing a legal file with some number of zero bytes: 512, 1024, etc. 5. Off-topic: Added -N flag to ncdump to force a specific output dataset name.
2017-10-25 06:25:09 +08:00
MPIDIR=/usr/lib64/mpich
PATH="${PATH}:${MPIDIR}/bin"
CC="${MPIDIR}/bin/mpicc"
CPPFLAGS="-I${MPIDIR}/include"
LDFLAGS="$LDFLAGS -L${MPIDIR}"
LDLIBS="-lmpich"
FLAGS="$FLAGS --enable-pnetcdf"
FLAGS="$FLAGS --enable-parallel-tests"
2013-01-18 10:25:12 +08:00
fi
#FLAGS="${FLAGS} --enable-stdio"
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export PATH
export CC
export CPPFLAGS
export CFLAGS
export LDFLAGS
export LD_LIBRARY_PATH
export MALLOC_CHECK
export CXXFLAGS
DISTCHECK_CONFIGURE_FLAGS="$FLAGS"
export DISTCHECK_CONFIGURE_FLAGS
2015-10-12 03:35:44 +08:00
if test "x$NB" != x -o "x$FAST" = x ; then
2014-06-27 06:40:08 +08:00
${MAKE} maintainer-clean >/dev/null 2>&1
2015-10-12 03:35:44 +08:00
fi
if test -z "$NB" ; then
if autoreconf -i --force ; then ok=1; else exit ; fi
2014-06-27 06:40:08 +08:00
fi
2015-10-12 03:35:44 +08:00
if test -z "$FAST" ; then
2015-08-16 06:26:35 +08:00
if test -f Makefile ; then ${MAKE} distclean >/dev/null 2>&1 ; fi
fi
sh $X ./configure ${FLAGS}
for c in $cmds; do
2015-09-13 06:41:14 +08:00
printenv LD_LIBRARY_PATH
${MAKE} ${FORCE} $c
done
exit 0