netcdf-c/dap4_test/test_hyrax.sh

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Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
#!/bin/sh
if test "x$srcdir" = "x"; then srcdir=`dirname $0`; fi
export srcdir;
. ../test_common.sh
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
. ${srcdir}/d4test_common.sh
set -e
Fix DAP4 remotetest server Warning: This PR is a follow on to PR https://github.com/Unidata/netcdf-c/pull/2555 and should not be merged until that prior PR has been merged. The changeset for this PR is a delta on the PR https://github.com/Unidata/netcdf-c/pull/2555. This PR re-enables the use of the server *remotetest.unidata.ucar.edu/d4ts* to test several features: 1. Show that access over the Internet to servers using the DAP4 protocol works. 2. Test that DAP4 support in the [Thredds Data Server](https://github.com/Unidata/tds) is operating correctly. 4. Test that the DAP4 support in the [netcdf-java library](https://github.com/Unidata/netcdf-java) library and the DAP4 support in the netcdf-c library are consistent and are interoperable. The test inputs (primarily *\*.nc* files) provided in the netcdf-c library are also used by the DAP4 Test Server (aka d4ts) to present web access to a collection of data files accessible via the DAP4 protocol and which can be used for testing Internet access to a working server. To be precise, this version of d4ts is currently in unmerged branches of the *netcdf-java* and *tds* Github repositories and so are not actually in the main repositories *yet*. However, the *d4ts.war* file was created from that branch and used to populate the *remotetest.unidata.ucar.edu* server The two other remote servers that were used in the past are *Hyrax* (OPenDAP.org) and *thredds-test*. These will continue to remain disabled until those servers can be fixed. ## Primary Changes * Rebuild the *baselineremote* directory. This directory contains the validation data needed to test the remote servers. * Re-enable using remotetest.unidata.ucar.edu as part of the DAP4 testing process. * Fix the *dap4_test/test_remote.sh* test script to match the current available test data. * Make some changes to libdap4 to improve the ability to catch malformed data streams [affects a lot of files in libdap4]. ## Misc. Unrelated Changes * Remove a raft of warnings, especially in nc_test4/tst_quantize.c. * Add some additional explanatory information to the NCZarr documentation. * Cleanup some Doxygen errors in the docs file and reorder some files.
2022-11-16 11:29:21 +08:00
echo "test_hyrax.sh:"
Improve S3 Documentation and Support ## Improvements to S3 Documentation * Create a new document *quickstart_paths.md* that give a summary of the legal path formats used by netcdf-c. This includes both file paths and URL paths. * Modify *nczarr.md* to remove most of the S3 related text. * Move the S3 text from *nczarr.md* to a new document *cloud.md*. * Add some S3-related text to the *byterange.md* document. Hopefully, this will make it easier for users to find the information they want. ## Rebuild NCZarr Testing In order to avoid problems with running make check in parallel, two changes were made: 1. The *nczarr_test* test system was rebuilt. Now, for each test. any generated files are kept in a test-specific directory, isolated from all other test executions. 2. Similarly, since the S3 test bucket is shared, any generated S3 objects are isolated using a test-specific key path. ## Other S3 Related Changes * Add code to ensure that files created on S3 are reclaimed at end of testing. * Used the bash "trap" command to ensure S3 cleanup even if the test fails. * Cleanup the S3 related configure.ac flag set since S3 is used in several places. So now one should use the option *--enable-s3* instead of *--enable-nczarr-s3*, although the latter is still kept as a deprecated alias for the former. * Get some of the github actions yml to work with S3; required fixing various test scripts adding a secret to access the Unidata S3 bucket. * Cleanup S3 portion of libnetcdf.settings.in and netcdf_meta.h.in and test_common.in. * Merge partial S3 support into dhttp.c. * Create an experimental s3 access library especially for use with Windows. It is enabled by using the options *--enable-s3-internal* (automake) or *-DENABLE_S3_INTERNAL=ON* (CMake). Also add a unit-test for it. * Move some definitions from ncrc.h to ncs3sdk.h ## Other Changes * Provide a default implementation of strlcpy and move this and similar defaults into *dmissing.c*.
2023-04-26 07:15:06 +08:00
# Some test baseline paths are too long for tar.
TOOLONG="AIRS/AIRH3STM.003/2002.12.01/AIRS.2002.12.01.L3.RetStd_H031.v4.0.21.0.G06101132853.hdf?/TotalCounts_A"
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
F="\
RSS/amsre/bmaps_v05/y2006/m01/amsre_20060131v5.dat?/time_a[0:2][0:5] \
Cleanup DAP4 testing NOTE: This PR should not be included in 4.9.1 since additional DAP4 related PRs will be forthcoming. This PR makes major changes to libdap4 and dap4_test driven by changes to TDS. * Enable DAP4 * Clean up the test input files and the test baseline comparison files. This entails: * Remove a multitude of unused test input and baseline data files; among them are dap4_test/: daptestfiles, dmrtestfiles, nctestfiles, and misctestfiles. * Define a canonical set of test input files and record in dap4_test/cdltestfiles. * Use the cdltestfiles to generate the .nc test inputs. This set of .nc files is then moved to the d4ts (DAP4 test server) war file in the tds repository. This set then becomes the canonical set of DAP4 test sources. * Scrape d4ts to obtain copies of the raw streams of DAP4 encoded data. The .dmr and .dap streams are then stored in dap4_test/rawtestfiles. * Disable some remote server tests until those servers are fixed. * Add an option to ncdump (-XF) that forces the type of the _FillValue attribute; this is primarily to simplify testing of fill mismatch. * Minor bug fixes to ncgen. * Changes to libdap4: * Replace old checksum hack with the dap4.checksum flag. * Support the dap4.XXX controls. * Cleanup _FillValue handling, especially var-attribute type mismatches. * Fix enum handling based on changes to netcdf-java. * Changes to dap4_test: * Add getopt support to various test support programs. * Remove unneeded shell scripts. * Add new scripts: test_curlopt.sh
2022-11-14 04:15:11 +08:00
nc4_test_files/nc4_nc_classic_no_comp.nc \
nc4_test_files/nc4_nc_classic_comp.nc \
Cleanup DAP4 testing NOTE: This PR should not be included in 4.9.1 since additional DAP4 related PRs will be forthcoming. This PR makes major changes to libdap4 and dap4_test driven by changes to TDS. * Enable DAP4 * Clean up the test input files and the test baseline comparison files. This entails: * Remove a multitude of unused test input and baseline data files; among them are dap4_test/: daptestfiles, dmrtestfiles, nctestfiles, and misctestfiles. * Define a canonical set of test input files and record in dap4_test/cdltestfiles. * Use the cdltestfiles to generate the .nc test inputs. This set of .nc files is then moved to the d4ts (DAP4 test server) war file in the tds repository. This set then becomes the canonical set of DAP4 test sources. * Scrape d4ts to obtain copies of the raw streams of DAP4 encoded data. The .dmr and .dap streams are then stored in dap4_test/rawtestfiles. * Disable some remote server tests until those servers are fixed. * Add an option to ncdump (-XF) that forces the type of the _FillValue attribute; this is primarily to simplify testing of fill mismatch. * Minor bug fixes to ncgen. * Changes to libdap4: * Replace old checksum hack with the dap4.checksum flag. * Support the dap4.XXX controls. * Cleanup _FillValue handling, especially var-attribute type mismatches. * Fix enum handling based on changes to netcdf-java. * Changes to dap4_test: * Add getopt support to various test support programs. * Remove unneeded shell scripts. * Add new scripts: test_curlopt.sh
2022-11-14 04:15:11 +08:00
nc4_test_files/nc4_unsigned_types.nc \
nc4_test_files/nc4_unsigned_types_comp.nc \
Cleanup DAP4 testing NOTE: This PR should not be included in 4.9.1 since additional DAP4 related PRs will be forthcoming. This PR makes major changes to libdap4 and dap4_test driven by changes to TDS. * Enable DAP4 * Clean up the test input files and the test baseline comparison files. This entails: * Remove a multitude of unused test input and baseline data files; among them are dap4_test/: daptestfiles, dmrtestfiles, nctestfiles, and misctestfiles. * Define a canonical set of test input files and record in dap4_test/cdltestfiles. * Use the cdltestfiles to generate the .nc test inputs. This set of .nc files is then moved to the d4ts (DAP4 test server) war file in the tds repository. This set then becomes the canonical set of DAP4 test sources. * Scrape d4ts to obtain copies of the raw streams of DAP4 encoded data. The .dmr and .dap streams are then stored in dap4_test/rawtestfiles. * Disable some remote server tests until those servers are fixed. * Add an option to ncdump (-XF) that forces the type of the _FillValue attribute; this is primarily to simplify testing of fill mismatch. * Minor bug fixes to ncgen. * Changes to libdap4: * Replace old checksum hack with the dap4.checksum flag. * Support the dap4.XXX controls. * Cleanup _FillValue handling, especially var-attribute type mismatches. * Fix enum handling based on changes to netcdf-java. * Changes to dap4_test: * Add getopt support to various test support programs. * Remove unneeded shell scripts. * Add new scripts: test_curlopt.sh
2022-11-14 04:15:11 +08:00
nc4_test_files/nc4_strings.nc \
nc4_test_files/nc4_strings_comp.nc \
nc4_test_files/ref_tst_compounds.nc \
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
"
failure() {
echo "*** Fail: $1"
exit 1
}
setresultdir results_test_hyrax
TESTSERVER=`${execdir}/findtestserver4 dap4 opendap test.opendap.org`
if test "x$TESTSERVER" = x ; then
echo "***XFAIL: Cannot find test.opendap.org testserver; test skipped"
exit 0
fi
Improve S3 Documentation and Support ## Improvements to S3 Documentation * Create a new document *quickstart_paths.md* that give a summary of the legal path formats used by netcdf-c. This includes both file paths and URL paths. * Modify *nczarr.md* to remove most of the S3 related text. * Move the S3 text from *nczarr.md* to a new document *cloud.md*. * Add some S3-related text to the *byterange.md* document. Hopefully, this will make it easier for users to find the information they want. ## Rebuild NCZarr Testing In order to avoid problems with running make check in parallel, two changes were made: 1. The *nczarr_test* test system was rebuilt. Now, for each test. any generated files are kept in a test-specific directory, isolated from all other test executions. 2. Similarly, since the S3 test bucket is shared, any generated S3 objects are isolated using a test-specific key path. ## Other S3 Related Changes * Add code to ensure that files created on S3 are reclaimed at end of testing. * Used the bash "trap" command to ensure S3 cleanup even if the test fails. * Cleanup the S3 related configure.ac flag set since S3 is used in several places. So now one should use the option *--enable-s3* instead of *--enable-nczarr-s3*, although the latter is still kept as a deprecated alias for the former. * Get some of the github actions yml to work with S3; required fixing various test scripts adding a secret to access the Unidata S3 bucket. * Cleanup S3 portion of libnetcdf.settings.in and netcdf_meta.h.in and test_common.in. * Merge partial S3 support into dhttp.c. * Create an experimental s3 access library especially for use with Windows. It is enabled by using the options *--enable-s3-internal* (automake) or *-DENABLE_S3_INTERNAL=ON* (CMake). Also add a unit-test for it. * Move some definitions from ncrc.h to ncs3sdk.h ## Other Changes * Provide a default implementation of strlcpy and move this and similar defaults into *dmissing.c*.
2023-04-26 07:15:06 +08:00
gethyraxbaseline() {
ARG1="$1"
BASELINEPART=`echo $ARG1 | cut -d':' -f1`
URLPART=`echo $ARG1 | cut -d':' -f2`
if test "x$BASELINEPART" = "x$URLPART" ; then BASELINEPART=""; fi
}
makehyraxurl() {
if test "x$QUERY" != x ; then QUERY="&dap4.ce=$QUERY"; fi
QUERY="?dap4.checksum=true${QUERY}"
URL="${TESTSERVER}/${PREFIX}/${FILE}${QUERY}"
URL="$URL#dap4&hyrax"
URL="$URL&log&show=fetch"
}
hyraxsplit() {
P="$1"
QUERY=`echo $P | cut -d? -f2`
if test "x$QUERY" = "x$P" ; then QUERY="" ; fi
P=`echo $P | cut -d? -f1`
FILE=`basename $P`
PREFIX=`dirname $P`
}
if test "x${RESET}" = x1 ; then rm -fr ${BASELINEHY}/*.hyrax ; fi
for f in $F ; do
hyraxsplit $f
makehyraxurl
echo "testing: $URL"
if ! ${NCDUMP} ${DUMPFLAGS} "${URL}" > ./results_test_hyrax/${FILE}.hyrax; then
failure "${URL}"
fi
if test "x${TEST}" = x1 ; then
if ! diff -wBb ${BASELINEHY}/${FILE}.hyrax ./results_test_hyrax/${FILE}.hyrax ; then
failure "diff ${FILE}.hyrax"
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
fi
elif test "x${RESET}" = x1 ; then
echo "${FILE}:"
cp ./results_test_hyrax/${FILE}.hyrax ${BASELINEHY}/${FILE}.hyrax
fi
Primary change: add dap4 support Specific changes: 1. Add dap4 code: libdap4 and dap4_test. Note that until the d4ts server problem is solved, dap4 is turned off. 2. Modify various files to support dap4 flags: configure.ac, Makefile.am, CMakeLists.txt, etc. 3. Add nc_test/test_common.sh. This centralizes the handling of the locations of various things in the build tree: e.g. where is ncgen.exe located. See nc_test/test_common.sh for details. 4. Modify .sh files to use test_common.sh 5. Obsolete separate oc2 by moving it to be part of netcdf-c. This means replacing code with netcdf-c equivalents. 5. Add --with-testserver to configure.ac to allow override of the servers to be used for --enable-dap-remote-tests. 6. There were multiple versions of nctypealignment code. Try to centralize in libdispatch/doffset.c and include/ncoffsets.h 7. Add a unit test for the ncuri code because of its complexity. 8. Move the findserver code out of libdispatch and into a separate, self contained program in ncdap_test and dap4_test. 9. Move the dispatch header files (nc{3,4}dispatch.h) to .../include because they are now shared by modules. 10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts. 11. Make use of MREMAP if available 12. Misc. minor changes e.g. - #include <config.h> -> #include "config.h" - Add some no-install headers to /include - extern -> EXTERNL and vice versa as needed - misc header cleanup - clean up checking for misc. unix vs microsoft functions 13. Change copyright decls in some files to point to LICENSE file. 14. Add notes to RELEASENOTES.md
2017-03-09 08:01:10 +08:00
done
echo "*** Pass"
exit 0