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89fbe00dec
* commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
504 lines
18 KiB
Java
504 lines
18 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNotNull;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.File;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import hdf.hdf5lib.structs.H5G_info_t;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5G {
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@Rule public TestName testname = new TestName();
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private static final String H5_FILE = "test.h5";
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private static final String H5_FILE2 = "test2.h5";
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private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12",
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"/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" };
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private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
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long H5fid = -1;
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long H5fid2 = -1;
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private final long _createGroup(long fid, String name) {
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long gid = -1;
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try {
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gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Gcreate: " + err);
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}
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assertTrue("TestH5G._createGroup: ", gid > 0);
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return gid;
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}
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private final long _createGroup2(long fid, String name) {
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long gid = -1;
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long gcpl = -1;
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try {
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gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl
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}
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catch (final Exception ex) {
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fail("H5.H5Pcreate(): " + ex);
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}
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assertTrue("TestH5G._createGroup2: ", gcpl >= 0);
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try {
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H5.H5Pset_link_creation_order(gcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED
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+ HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order
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}
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catch (final Exception ex) {
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try {H5.H5Pclose(gcpl);} catch (final Exception exx) {}
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fail("H5.H5Pset_link_creation_order: " + ex);
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}
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try {
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gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
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gcpl, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Gcreate: " + err);
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}
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finally {
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try {H5.H5Pclose(gcpl);} catch (final Exception ex) {}
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}
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assertTrue("TestH5G._createGroup2: ", gid > 0);
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return gid;
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}
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private final long _openGroup(long fid, String name) {
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long gid = -1;
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try {
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gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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gid = -1;
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err.printStackTrace();
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fail("H5.H5Gopen: " + err);
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}
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assertTrue("TestH5G._openGroup: ", gid > 0);
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return gid;
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}
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private final void _deleteFile(String filename) {
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File file = new File(filename);
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if (file.exists()) {
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try {file.delete();} catch (SecurityException e) {}
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}
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}
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@Before
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public void createH5file()
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throws HDF5LibraryException, NullPointerException {
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assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
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System.out.print(testname.getMethodName());
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try {
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H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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H5fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.createH5file: " + err);
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}
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assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid > 0);
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assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid2 > 0);
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long gid = -1;
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for (int i = 0; i < GROUPS.length; i++) {
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gid = _createGroup(H5fid, GROUPS[i]);
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try {H5.H5Gclose(gid);} catch (Exception ex) {}
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}
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for (int i = 0; i < GROUPS2.length; i++) {
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gid = _createGroup2(H5fid2, GROUPS2[i]);
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try {H5.H5Gclose(gid);} catch (Exception ex) {}
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}
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException {
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if (H5fid > 0) {
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try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
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}
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if (H5fid2 > 0) {
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try {H5.H5Fclose(H5fid2);} catch (Exception ex) {}
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}
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_deleteFile(H5_FILE);
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_deleteFile(H5_FILE2);
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System.out.println();
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}
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@Test
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public void testH5Gopen() {
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long gid = -1;
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for (int i = 0; i < GROUPS.length; i++) {
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try {
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gid = H5.H5Gopen(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gopen: H5.H5Gopen: " + err);
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}
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assertTrue("TestH5G.testH5Gopen: ", gid > 0);
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try {
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H5.H5Gclose(gid);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Gget_create_plist() {
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long gid = -1;
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long pid = -1;
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for (int i = 0; i < GROUPS.length; i++) {
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try {
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gid = H5.H5Gopen(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_create_plist: H5.H5Gopen: " + err);
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}
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assertTrue("TestH5G.testH5Gget_create_plist: ", gid > 0);
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try {
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pid = H5.H5Gget_create_plist(gid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_create_plist: H5.H5Gget_create_plist: " + err);
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}
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assertTrue("TestH5G.testH5Gget_create_plist: ", pid > 0);
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try {
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H5.H5Gclose(gid);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Gget_info() {
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H5G_info_t info = null;
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for (int i = 0; i < GROUPS.length; i++) {
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try {
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info = H5.H5Gget_info(H5fid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_info: H5.H5Gget_info: " + err);
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}
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assertNotNull("TestH5G.testH5Gget_info: ", info);
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}
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}
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@Test
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public void testH5Gget_info_by_name() {
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H5G_info_t info = null;
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for (int i = 0; i < GROUPS.length; i++) {
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try {
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info = H5.H5Gget_info_by_name(H5fid, GROUPS[i],
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HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_info_by_name: H5.H5Gget_info_by_name: " + err);
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}
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assertNotNull("TestH5G.testH5Gget_info_by_name: ", info);
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}
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}
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@Test
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public void testH5Gget_info_by_idx() {
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H5G_info_t info = null;
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for (int i = 0; i < 2; i++) {
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try {
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info = H5.H5Gget_info_by_idx(H5fid, "/G1",
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HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
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i, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_info_by_idx: H5.H5Gget_info_by_idx: " + err);
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}
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assertNotNull("TestH5G.testH5Gget_info_by_idx: ", info);
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}
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}
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@Test
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public void testH5Gget_obj_info_all() {
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H5G_info_t info = null;
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long gid = _openGroup(H5fid, GROUPS[0]);
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try {
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info = H5.H5Gget_info(gid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_info: " + err);
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}
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finally {
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try {H5.H5Gclose(gid);} catch (Exception ex) { }
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}
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assertNotNull("TestH5G.testH5Gget_obj_info_all: ", info);
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assertTrue("TestH5G.testH5Gget_obj_info_all: number of links is empty", info.nlinks > 0);
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String objNames[] = new String[(int) info.nlinks];
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int objTypes[] = new int[(int) info.nlinks];
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int lnkTypes[] = new int[(int) info.nlinks];
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long objRefs[] = new long[(int) info.nlinks];
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int names_found = 0;
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try {
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names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames,
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objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_obj_info_all: " + err);
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}
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assertTrue("number found[" + names_found + "] different than expected["
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+ objNames.length + "]", names_found == objNames.length);
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for (int i = 0; i < objNames.length; i++) {
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assertNotNull("name #" + i + " does not exist", objNames[i]);
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assertTrue("TestH5G.testH5Gget_obj_info_all: ", objNames[i].length() > 0);
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}
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}
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@Test
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public void testH5Gget_obj_info_all_gid() {
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H5G_info_t info = null;
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long gid = _openGroup(H5fid, GROUPS[0]);
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try {
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info = H5.H5Gget_info(gid);
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assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: ", info);
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assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number of links is empty", info.nlinks > 0);
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String objNames[] = new String[(int) info.nlinks];
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long objRefs[] = new long[(int) info.nlinks];
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int lnkTypes[] = new int[(int) info.nlinks];
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int objTypes[] = new int[(int) info.nlinks];
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int names_found = 0;
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try {
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names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
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objRefs, HDF5Constants.H5_INDEX_NAME);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_obj_info_all: " + err);
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}
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assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found + "] different than expected["
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+ objNames.length + "]", names_found == objNames.length);
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for (int i = 0; i < objNames.length; i++) {
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assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist", objNames[i]);
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assertTrue("TestH5G.testH5Gget_obj_info_all_gid: ", objNames[i].length() > 0);
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}
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_info: " + err);
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}
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finally {
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try {H5.H5Gclose(gid);} catch (Exception ex) { }
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}
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}
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@Test
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public void testH5Gget_obj_info_all_gid2() {
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H5G_info_t info = null;
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long gid = _openGroup(H5fid, GROUPS[1]);
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try {
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info = H5.H5Gget_info(gid);
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assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: ", info);
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assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number of links is empty", info.nlinks > 0);
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String objNames[] = new String[(int) info.nlinks];
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long objRefs[] = new long[(int) info.nlinks];
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int lnkTypes[] = new int[(int) info.nlinks];
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int objTypes[] = new int[(int) info.nlinks];
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int names_found = 0;
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try {
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names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
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objRefs, HDF5Constants.H5_INDEX_NAME);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_obj_info_all: " + err);
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}
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assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found + "] different than expected["
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+ objNames.length + "]", names_found == objNames.length);
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for (int i = 0; i < objNames.length; i++) {
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assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist", objNames[i]);
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assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: ", objNames[i].length() > 0);
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}
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_info: " + err);
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}
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finally {
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try {H5.H5Gclose(gid);} catch (Exception ex) { }
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}
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}
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@Test
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public void testH5Gget_obj_info_max() {
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long gid = _openGroup(H5fid, GROUPS[0]);
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long groups_max_size = GROUPS.length + 1;
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String objNames[] = new String[(int)groups_max_size];
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int objTypes[] = new int[(int)groups_max_size];
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int lnkTypes[] = new int[(int)groups_max_size];
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long objRefs[] = new long[(int)groups_max_size];
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int names_found = 0;
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try {
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names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
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objRefs, groups_max_size);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5G.testH5Gget_obj_info_max: H5.H5Gget_obj_info_max: " + err);
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}
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finally {
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try {H5.H5Gclose(gid);} catch (Exception ex) { }
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}
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// expected number does not include root group
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assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found + "] different than expected["
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+ (GROUPS.length - 1) + "]", names_found == (GROUPS.length - 1));
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for (int i = 0; i < GROUPS.length-1; i++) {
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assertNotNull("TestH5G.testH5Gget_obj_info_max: name #"+i+" does not exist",objNames[i]);
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assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length()>0);
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}
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}
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@Test
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public void testH5Gget_obj_info_max_limit() {
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long gid = _openGroup(H5fid, GROUPS[0]);
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long groups_max_size = GROUPS.length - 3;
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String objNames[] = new String[(int)groups_max_size];
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int objTypes[] = new int[(int)groups_max_size];
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int lnkTypes[] = new int[(int)groups_max_size];
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long objRefs[] = new long[(int)groups_max_size];
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int names_found = 0;
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try {
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names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
|
|
objRefs, groups_max_size);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("TestH5G.testH5Gget_obj_info_max_limit: H5.H5Gget_obj_info_max: " + err);
|
|
}
|
|
finally {
|
|
try {H5.H5Gclose(gid);} catch (Exception ex) { }
|
|
}
|
|
|
|
assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found + "] different than expected["
|
|
+ groups_max_size + "]", names_found == groups_max_size);
|
|
for (int i = 0; i < objNames.length; i++) {
|
|
assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist", objNames[i]);
|
|
assertTrue("TestH5G.testH5Gget_obj_info_max_limit: ", objNames[i].length() > 0);
|
|
}
|
|
}
|
|
|
|
@Test
|
|
public void testH5Gget_obj_info_all_byIndexType() {
|
|
H5G_info_t info = null;
|
|
|
|
long gid = _openGroup(H5fid2, GROUPS2[0]);
|
|
|
|
try {
|
|
info = H5.H5Gget_info(gid);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_info: " + err);
|
|
}
|
|
finally {
|
|
try {H5.H5Gclose(gid);} catch (Exception ex) { }
|
|
}
|
|
|
|
assertNotNull("TestH5G.testH5Gget_obj_info_all_byIndexType: ", info);
|
|
assertTrue("TestH5G.testH5Gget_obj_info_all_byIndexType: number of links is empty", info.nlinks > 0);
|
|
String objNames[] = new String[(int) info.nlinks];
|
|
int objTypes[] = new int[(int) info.nlinks];
|
|
int lnkTypes[] = new int[(int) info.nlinks];
|
|
long objRefs[] = new long[(int) info.nlinks];
|
|
|
|
try {
|
|
H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames,
|
|
objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_CRT_ORDER);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err);
|
|
}
|
|
|
|
assertEquals("G12",objNames[1]);
|
|
assertEquals("G13", objNames[2] );
|
|
assertEquals("G11", objNames[3] );
|
|
|
|
try {
|
|
H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames,
|
|
objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err);
|
|
}
|
|
|
|
assertEquals("G12",objNames[1]);
|
|
assertEquals("G13", objNames[2] );
|
|
assertEquals("G14", objNames[3] );
|
|
}
|
|
|
|
}
|