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hdf5/tools/h5dump/testh5dump.sh.in

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#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
#
# Tests for the h5dump tool
# Determine which filters are available
USE_FILTER_SZIP="@USE_FILTER_SZIP@"
USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
USE_FILTER_NBIT="@USE_FILTER_NBIT@"
USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
DUMPER=h5dump # The tool name
DUMPER_BIN=`pwd`/$DUMPER # The path of the tool binary
TESTDIR=`pwd`/../testfiles
H5DIFF=../h5diff/h5diff # The h5diff tool name
H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
H5IMPORT=../h5import/h5import # The h5import tool name
H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary
CMP='cmp -s'
DIFF='diff -c'
nerrors=0
verbose=yes
# The build (current) directory might be different than the source directory.
if test -z "$srcdir"; then
srcdir=.
fi
test -d $TESTDIR || mkdir $TESTDIR
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
#
TESTING() {
SPACES=" "
echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Run a test and print PASS or *FAIL*. If a test fails then increment
# the `nerrors' global variable and (if $verbose is set) display the
# difference between the actual output and the expected output. The
# expected output is given as the first argument to this function and
# the actual output file is calculated by replacing the `.ddl' with
# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
# non-zero value.
#
TOOLTEST() {
expect="$srcdir/../testfiles/$1"
actual="../testfiles/`basename $1 .ddl`.out"
actual_err="../testfiles/`basename $1 .ddl`.err"
shift
# Run test.
TESTING $DUMPER $@
(
echo "#############################"
echo "Expected output for '$DUMPER $@'"
echo "#############################"
cd $srcdir/../testfiles
$RUNSERIAL $DUMPER_BIN $@
) >$actual 2>$actual_err
cat $actual_err >> $actual
if [ ! -f $expect ]; then
# Create the expect file if it doesn't yet exist.
echo " CREATED"
cp $actual $expect
elif $CMP $expect $actual; then
echo " PASSED"
else
echo "*FAILED*"
echo " Expected result (*.ddl) differs from actual result (*.out)"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actual_err
fi
}
# same as TOOLTEST but does not print the header Expected output
# used for the binary tests that expect a full path in -o
TOOLTEST1() {
expect="$srcdir/../testfiles/$1"
actual="../testfiles/`basename $1 .ddl`.out"
actual_err="../testfiles/`basename $1 .ddl`.err"
shift
# Run test.
TESTING $DUMPER $@
(
cd $srcdir/../testfiles
$RUNSERIAL $DUMPER_BIN $@
) >$actual 2>$actual_err
cat $actual_err >> $actual
if [ ! -f $expect ]; then
# Create the expect file if it doesn't yet exist.
echo " CREATED"
cp $actual $expect
elif $CMP $expect $actual; then
echo " PASSED"
else
echo "*FAILED*"
echo " Expected result (*.ddl) differs from actual result (*.out)"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actual_err
fi
}
# Print a "SKIP" message
SKIP() {
TESTING $DUMPER $@
echo " -SKIP-"
}
# Print a line-line message left justified in a field of 70 characters
#
PRINT_H5DIFF() {
SPACES=" "
echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Call the h5diff tool
#
DIFFTEST()
{
PRINT_H5DIFF $@
(
cd $srcdir/../testfiles
if [ "`uname -s`" = "TFLOPS O/S" ]; then
$RUNSERIAL $H5DIFF_BIN $@ -q
else
$RUNSERIAL $H5DIFF_BIN "$@" -q
fi
)
RET=$?
if [ $RET != 0 ] ; then
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
fi
}
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
PRINT_H5IMPORT() {
SPACES=" "
echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Call the h5import tool
#
IMPORTTEST()
{
# remove the output hdf5 file if it exists
hdf5_file="$srcdir/../testfiles/$5"
if [ -f $hdf5_file ]; then
rm -f $hdf5_file
fi
PRINT_H5IMPORT $@
(
cd $srcdir/../testfiles
if [ "`uname -s`" = "TFLOPS O/S" ]; then
$RUNSERIAL $H5IMPORT_BIN $@
else
$RUNSERIAL $H5IMPORT_BIN "$@"
fi
)
RET=$?
if [ $RET != 0 ] ; then
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
fi
}
##############################################################################
##############################################################################
### T H E T E S T S ###
##############################################################################
##############################################################################
# test for displaying groups
TOOLTEST tgroup-1.ddl tgroup.h5
# test for displaying the selected groups
TOOLTEST tgroup-2.ddl --group=/g2 --group / -g /y tgroup.h5
# test for displaying simple space datasets
TOOLTEST tdset-1.ddl tdset.h5
# test for displaying selected datasets
TOOLTEST tdset-2.ddl -H -d dset1 -d /dset2 --dataset=dset3 tdset.h5
# test for displaying attributes
TOOLTEST tattr-1.ddl tattr.h5
# test for displaying the selected attributes of string type and scalar space
TOOLTEST tattr-2.ddl -a /attr1 --attribute /attr4 --attribute=/attr5 tattr.h5
# test for header and error messages
TOOLTEST tattr-3.ddl --header -a /attr2 --attribute=/attr tattr.h5
# test for displaying attributes in shared datatype (also in group and dataset)
TOOLTEST tnamed_dtype_attr.ddl tnamed_dtype_attr.h5
# test for displaying soft links and user-defined links
TOOLTEST tslink-1.ddl tslink.h5
TOOLTEST tudlink-1.ddl tudlink.h5
# test for displaying the selected link
TOOLTEST tslink-2.ddl -l slink2 tslink.h5
TOOLTEST tudlink-2.ddl -l udlink2 tudlink.h5
# tests for hard links
TOOLTEST thlink-1.ddl thlink.h5
TOOLTEST thlink-2.ddl -d /g1/dset2 --dataset /dset1 --dataset=/g1/g1.1/dset3 thlink.h5
TOOLTEST thlink-3.ddl -d /g1/g1.1/dset3 --dataset /g1/dset2 --dataset=/dset1 thlink.h5
TOOLTEST thlink-4.ddl -g /g1 thlink.h5
TOOLTEST thlink-5.ddl -d /dset1 -g /g2 -d /g1/dset2 thlink.h5
# tests for compound data types
TOOLTEST tcomp-1.ddl tcompound.h5
# test for named data types
TOOLTEST tcomp-2.ddl -t /type1 --datatype /type2 --datatype=/group1/type3 tcompound.h5
# test for unamed type
TOOLTEST tcomp-3.ddl -t /#6632 -g /group2 tcompound.h5
# test complicated compound datatype
TOOLTEST tcomp-4.ddl tcompound_complex.h5
#test for the nested compound type
TOOLTEST tnestcomp-1.ddl tnestedcomp.h5
# test for options
TOOLTEST tall-1.ddl tall.h5
TOOLTEST tall-2.ddl --header -g /g1/g1.1 -a attr2 tall.h5
TOOLTEST tall-3.ddl -d /g2/dset2.1 -l /g1/g1.2/g1.2.1/slink tall.h5
# test for loop detection
TOOLTEST tloop-1.ddl tloop.h5
# test for string
TOOLTEST tstr-1.ddl tstr.h5
TOOLTEST tstr-2.ddl tstr2.h5
# test for file created by Lib SAF team
TOOLTEST tsaf.ddl tsaf.h5
# test for file with variable length data
TOOLTEST tvldtypes1.ddl tvldtypes1.h5
TOOLTEST tvldtypes2.ddl tvldtypes2.h5
TOOLTEST tvldtypes3.ddl tvldtypes3.h5
TOOLTEST tvldtypes4.ddl tvldtypes4.h5
TOOLTEST tvldtypes5.ddl tvldtypes5.h5
#test for file with variable length string data
TOOLTEST tvlstr.ddl tvlstr.h5
# test for files with array data
TOOLTEST tarray1.ddl tarray1.h5
TOOLTEST tarray2.ddl tarray2.h5
TOOLTEST tarray3.ddl tarray3.h5
TOOLTEST tarray4.ddl tarray4.h5
TOOLTEST tarray5.ddl tarray5.h5
TOOLTEST tarray6.ddl tarray6.h5
TOOLTEST tarray7.ddl tarray7.h5
# test for files with empty data
TOOLTEST tempty.ddl tempty.h5
# test for files with groups that have comments
TOOLTEST tgrp_comments.ddl tgrp_comments.h5
# test the --filedriver flag
TOOLTEST tsplit_file.ddl --filedriver=split tsplit_file
TOOLTEST tfamily.ddl --filedriver=family tfamily%05d.h5
TOOLTEST tmulti.ddl --filedriver=multi tmulti
# test for files with group names which reach > 1024 bytes in size
TOOLTEST tlarge_objname.ddl -w157 tlarge_objname.h5
# test '-A' to suppress data but print attr's
TOOLTEST tall-2A.ddl -A tall.h5
# test '-r' to print attributes in ASCII instead of decimal
TOOLTEST tall-2B.ddl -A -r tall.h5
# test Subsetting
TOOLTEST tall-4s.ddl --dataset=/g1/g1.1/dset1.1.1 --start=1,1 --stride=2,3 --count=3,2 --block=1,1 tall.h5
TOOLTEST tall-5s.ddl -d "/g1/g1.1/dset1.1.2[0;2;10;]" tall.h5
TOOLTEST tdset-3s.ddl -d "/dset1[1,1;;;]" tdset.h5
# block
# TOOLTEST tdset2-1s.ddl -d "/dset1[;3,2;4,4;1,4]" tdset2.h5
# test printing characters in ASCII instead of decimal
TOOLTEST tchar1.ddl -r tchar.h5
# test failure handling
# Missing file name
TOOLTEST tnofilename.ddl
# rev. 2004
# tests for super block
TOOLTEST tboot1.ddl -H -B -d dset tfcontents1.h5
TOOLTEST tboot2.ddl -B tfcontents2.h5
# test -p with a non existing dataset
TOOLTEST tperror.ddl -p -d bogus tfcontents1.h5
# test for file contents
TOOLTEST tcontents.ddl -n tfcontents1.h5
# tests for storage layout
# compact
TOOLTEST tcompact.ddl -H -p -d compact tfilters.h5
# contiguous
TOOLTEST tcontiguos.ddl -H -p -d contiguous tfilters.h5
# chunked
TOOLTEST tchunked.ddl -H -p -d chunked tfilters.h5
# external
TOOLTEST texternal.ddl -H -p -d external tfilters.h5
# fill values
TOOLTEST tfill.ddl -p tfvalues.h5
# several datatype, with references , print path
TOOLTEST treference.ddl tattr2.h5
# escape/not escape non printable characters
TOOLTEST tstringe.ddl -e tstr3.h5
TOOLTEST tstring.ddl tstr3.h5
# char data as ASCII with non escape
TOOLTEST tstring2.ddl -r -d str4 tstr3.h5
# array indices print/not print
TOOLTEST tindicesyes.ddl taindices.h5
TOOLTEST tindicesno.ddl -y taindices.h5
# array indices with subsetting
TOOLTEST tindicessub1.ddl -d 1d -s 3 -c 40 taindices.h5
TOOLTEST tindicessub2.ddl -d 2d -s 1,3 -c 6,4 taindices.h5
TOOLTEST tindicessub3.ddl -d 3d -s 0,1,3 -c 2,6,4 taindices.h5
TOOLTEST tindicessub4.ddl -d 4d -s 0,0,1,3 -c 2,2,6,4 taindices.h5
# tests for filters
# SZIP
option="-H -p -d szip tfilters.h5"
if test $USE_FILTER_SZIP != "yes"; then
SKIP $option
else
TOOLTEST tszip.ddl $option
fi
# deflate
option="-H -p -d deflate tfilters.h5"
if test $USE_FILTER_DEFLATE != "yes"; then
SKIP $option
else
TOOLTEST tdeflate.ddl $option
fi
# shuffle
option="-H -p -d shuffle tfilters.h5"
if test $USE_FILTER_SHUFFLE != "yes"; then
SKIP $option
else
TOOLTEST tshuffle.ddl $option
fi
# fletcher32
option="-H -p -d fletcher32 tfilters.h5"
if test $USE_FILTER_FLETCHER32 != "yes"; then
SKIP $option
else
TOOLTEST tfletcher32.ddl $option
fi
# nbit
option="-H -p -d nbit tfilters.h5"
if test $USE_FILTER_NBIT != "yes"; then
SKIP $option
else
TOOLTEST tnbit.ddl $option
fi
# scaleoffset
option="-H -p -d scaleoffset tfilters.h5"
if test $USE_FILTER_SCALEOFFSET != "yes"; then
SKIP $option
else
TOOLTEST tscaleoffset.ddl $option
fi
# all
option="-H -p -d all tfilters.h5"
if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes"; then
SKIP $option
else
TOOLTEST tallfilters.ddl $option
fi
# user defined
TOOLTEST tuserfilter.ddl -H -p -d myfilter tfilters.h5
# test for displaying objects with very long names
TOOLTEST tlonglinks.ddl tlonglinks.h5
# dimensions over 4GB, print boundary
TOOLTEST tbigdims.ddl -d dset4gb -s 4294967284 -c 22 tbigdims.h5
# hyperslab read
TOOLTEST thyperslab.ddl thyperslab.h5
#
# test for displaying dataset and attribute of null space
TOOLTEST tnullspace.ddl tnullspace.h5
# test for long double (some systems do not have long double)
#TOOLTEST tldouble.ddl tldouble.h5
# test for vms
TOOLTEST tvms.ddl tvms.h5
# test for binary output
TOOLTEST1 tbin1.ddl -d integer -o $TESTDIR/out1.bin -b LE tbinary.h5
TOOLTEST1 tbin2.ddl -d float -o $TESTDIR/out2.bin -b BE tbinary.h5
# the MEMORY test can be validated with h5import/h5diff
TOOLTEST1 tbin3.ddl -d integer -o $TESTDIR/out3.bin -b MEMORY tbinary.h5
IMPORTTEST $TESTDIR/out3.bin -c out3.h5import -o $TESTDIR/out3.h5
DIFFTEST tbinary.h5 $TESTDIR/out3.h5 /integer /integer
TOOLTEST1 tbin4.ddl -d double -o $TESTDIR/out4.bin -b FILE tbinary.h5
# Clean up binary output files
if test -z "$HDF5_NOCLEANUP"; then
rm -f $TESTDIR/out[1-4].bin
rm -f $TESTDIR/out3.h5
fi
# test for dataset region references
TOOLTEST tdatareg.ddl tdatareg.h5
# tests for group creation order
# "1" tracked, "2" name, root tracked
TOOLTEST tordergr1.ddl --group=1 --sort_by=creation_order --sort_order=ascending tordergr.h5
TOOLTEST tordergr2.ddl --group=1 --sort_by=creation_order --sort_order=descending tordergr.h5
TOOLTEST tordergr3.ddl -g 2 -q name -z ascending tordergr.h5
TOOLTEST tordergr4.ddl -g 2 -q name -z descending tordergr.h5
TOOLTEST tordergr5.ddl -q creation_order tordergr.h5
# tests for attribute order
TOOLTEST torderattr1.ddl -H --sort_by=name --sort_order=ascending torderattr.h5
TOOLTEST torderattr2.ddl -H --sort_by=name --sort_order=descending torderattr.h5
TOOLTEST torderattr3.ddl -H --sort_by=creation_order --sort_order=ascending torderattr.h5
TOOLTEST torderattr4.ddl -H --sort_by=creation_order --sort_order=descending torderattr.h5
if test $nerrors -eq 0 ; then
echo "All $DUMPER tests passed."
fi
exit $nerrors
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