mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-11-27 02:10:55 +08:00
1019 lines
27 KiB
C
1019 lines
27 KiB
C
#include "h5dump.h"
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#include <stdio.h>
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#include "H5private.h"
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static int indent = 0;
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static int display_data = 1;
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static int status = 0;
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static void dump_group (hid_t , const char* );
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static void dump_dataset (hid_t, const char*);
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static void dump_data (hid_t, int);
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static void dump_named_datatype (hid_t , const char *);
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/*-------------------------------------------------------------------------
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* Function: usage
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*
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* Purpose: Print the usage message about dumper
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*
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* Return: void
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static void
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usage(void)
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{
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fprintf(stderr,
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"\nUsage of HDF5 Dumper:\n\n \
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h5dump [-h] [-bb] [-header] [-a <names>] [-d <names>] [-g <names>]\n \
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[-l <names>] <file>\n\n\
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-h Print information on this command.\n\
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-bb Display the conent of boot block. The default is not to display.\n\
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-header Display header only; that is, no data displayed.\n\
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-a <names> Display the specified attribute(s).\n\
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-d <names> Display the specified dataset(s).\n\
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-g <names> Display all the objects within the specified group(s).\n\
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-l <names> Display the specified link value(s).\n\n");
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}
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/*-------------------------------------------------------------------------
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* Function: indentation
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*
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* Purpose: Print spaces for indentation
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*
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* Return: void
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static void indentation(int x) {
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while (x>0) {
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printf(" ");
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x--;
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}
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}
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/*-------------------------------------------------------------------------
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* Function: datatype_name
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*
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* Purpose: Prints the name of data type.
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*
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* Return: void
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static void
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datatype_name(hid_t type) {
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switch (H5Tget_class(type)) {
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case H5T_INTEGER:
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if (H5Tequal(type, H5T_STD_I8BE))
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printf( "H5T_STD_I8BE");
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else if (H5Tequal(type, H5T_STD_I8LE))
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printf( "H5T_STD_I8LE");
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else if (H5Tequal(type, H5T_STD_I16BE))
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printf( "H5T_STD_I16BE");
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else if (H5Tequal(type, H5T_STD_I16LE))
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printf( "H5T_STD_I16LE");
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else if (H5Tequal(type, H5T_STD_I32BE))
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printf( "H5T_STD_I32BE");
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else if (H5Tequal(type, H5T_STD_I32LE))
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printf( "H5T_STD_I32LE");
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else if (H5Tequal(type, H5T_STD_I64BE))
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printf( "H5T_STD_I64BE");
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else if (H5Tequal(type, H5T_STD_I64LE))
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printf( "H5T_STD_I64LE");
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else if (H5Tequal(type, H5T_STD_U8BE))
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printf( "H5T_STD_U8BE");
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else if (H5Tequal(type, H5T_STD_U8LE))
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printf( "H5T_STD_U8LE");
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else if (H5Tequal(type, H5T_STD_U16BE))
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printf( "H5T_STD_U16BE");
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else if (H5Tequal(type, H5T_STD_U16LE))
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printf( "H5T_STD_U16LE");
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else if (H5Tequal(type, H5T_STD_U32BE))
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printf( "H5T_STD_U32BE");
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else if (H5Tequal(type, H5T_STD_U32LE))
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printf( "H5T_STD_U32LE");
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else if (H5Tequal(type, H5T_STD_U64BE))
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printf( "H5T_STD_U64BE");
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else if (H5Tequal(type, H5T_STD_U64LE))
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printf( "H5T_STD_U64LE");
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else if (H5Tequal(type, H5T_NATIVE_CHAR))
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printf( "H5T_NATIVE_CHAR");
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else if (H5Tequal(type, H5T_NATIVE_UCHAR))
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printf( "H5T_NATIVE_UCHAR");
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else if (H5Tequal(type, H5T_NATIVE_SHORT))
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printf( "H5T_NATIVE_SHORT");
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else if (H5Tequal(type, H5T_NATIVE_USHORT))
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printf( "H5T_NATIVE_USHORT");
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else if (H5Tequal(type, H5T_NATIVE_INT))
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printf( "H5T_NATIVE_INT");
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else if (H5Tequal(type, H5T_NATIVE_UINT))
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printf( "H5T_NATIVE_UINT");
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else if (H5Tequal(type, H5T_NATIVE_LONG))
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printf( "H5T_NATIVE_LONG");
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else if (H5Tequal(type, H5T_NATIVE_ULONG))
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printf( "H5T_NATIVE_ULONG");
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else if (H5Tequal(type, H5T_NATIVE_LLONG))
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printf( "H5T_NATIVE_LLONG");
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else if (H5Tequal(type, H5T_NATIVE_ULLONG))
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printf( "H5T_NATIVE_ULLONG");
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else printf( "unknown integer");
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break;
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case H5T_FLOAT:
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if (H5Tequal(type, H5T_IEEE_F32BE))
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printf( "H5T_IEEE_F32BE");
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else if (H5Tequal(type, H5T_IEEE_F32LE))
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printf( "H5T_IEEE_F32LE");
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else if (H5Tequal(type, H5T_IEEE_F64BE))
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printf( "H5T_IEEE_F64BE");
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else if (H5Tequal(type, H5T_IEEE_F64LE))
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printf( "H5T_IEEE_F64LE");
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else if (H5Tequal(type, H5T_NATIVE_FLOAT))
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printf( "H5T_NATIVE_FLOAT");
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else if (H5Tequal(type, H5T_NATIVE_DOUBLE))
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printf( "H5T_NATIVE_DOUBLE");
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else if (H5Tequal(type, H5T_NATIVE_LDOUBLE))
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printf( "H5T_NATIVE_LDOUBLE");
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else printf( "unknown float");
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break;
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case H5T_TIME:
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printf( "time: not yet implemented");
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case H5T_STRING:
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if (H5Tequal(type,H5T_C_S1))
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printf( "H5T_C_S1");
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else if (H5Tequal(type,H5T_FORTRAN_S1))
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printf( "H5T_FORTRAN_S1");
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else printf( "unknown string");
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break;
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case H5T_BITFIELD:
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if (H5Tequal(type, H5T_STD_B8BE))
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printf( "H5T_STD_B8BE");
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else if (H5Tequal(type, H5T_STD_B8LE))
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printf( "H5T_STD_B8LE");
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else if (H5Tequal(type, H5T_STD_B16BE))
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printf( "H5T_STD_B16BE");
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else if (H5Tequal(type, H5T_STD_B16LE))
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printf( "H5T_STD_B16LE");
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else if (H5Tequal(type, H5T_STD_B32BE))
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printf( "H5T_STD_B32BE");
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else if (H5Tequal(type, H5T_STD_B32LE))
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printf( "H5T_STD_B32LE");
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else if (H5Tequal(type, H5T_STD_B64BE))
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printf( "H5T_STD_B64BE");
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else if (H5Tequal(type, H5T_STD_B64LE))
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printf( "H5T_STD_B64LE");
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else printf( "unknown bitfield");
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break;
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case H5T_OPAQUE:
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printf( "opaque: not yet implemented");
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break;
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case H5T_COMPOUND:
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printf( "compound: not yet implemented");
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break;
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default:
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printf( "unknown data type");
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break;
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}
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}
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/*-------------------------------------------------------------------------
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* Function: dump_bb
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*
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* Purpose: Dump the boot block
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*
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* Return: void
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static void
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dump_bb(void) {
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printf ("%s %s boot block not yet implemented %s\n", BOOT_BLOCK, BEGIN, END);
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}
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/*-------------------------------------------------------------------------
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* Function: dump_datatype
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*
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* Purpose: Dump the data type. Data type can be HDF5 predefined
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* atomic data type, named data type or compound data type.
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*
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* Return: void
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static void
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dump_datatype (hid_t type) {
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indentation (indent+col);
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printf ("%s %s \"", DATATYPE, BEGIN);
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datatype_name(type);
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printf ("\" %s\n", END);
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}
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/*-------------------------------------------------------------------------
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* Function: dump_dataspace
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*
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* Purpose: Dump the data space. Data space can be named data space,
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* array, or others.
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*
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* Return: void
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static void
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dump_dataspace (hid_t space)
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{
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hsize_t size[64];
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hsize_t maxsize[64]; /* check max dims size */
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int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
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int i;
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indentation (indent+col);
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printf("%s ", DATASPACE);
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if (H5Sis_simple(space)) {
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HDfprintf (stdout, "%s %s ( %Hu",BEGIN, ARRAY, size[0]);
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for (i = 1; i < ndims; i++)
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HDfprintf (stdout, ", %Hu", size[i]);
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printf(" ) ");
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if (maxsize[0]==H5S_UNLIMITED)
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HDfprintf (stdout, "( %s", "H5S_UNLIMITED");
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else
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HDfprintf (stdout, "( %Hu", maxsize[0]);
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for (i = 1; i < ndims; i++)
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if (maxsize[i]==H5S_UNLIMITED)
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HDfprintf (stdout, ", %s", "H5S_UNLIMITED");
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else
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HDfprintf (stdout, ", %Hu", maxsize[i]);
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printf(" ) %s\n", END);
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} else
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printf("%s not yet implemented %s\n", BEGIN, END);
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}
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/*-------------------------------------------------------------------------
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* Function: dump_attr
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*
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* Purpose: dump the attribute
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*
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* Return: Success: SUCCEED
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*
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* Failure: FAIL
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static herr_t
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dump_attr (hid_t attr, const char *attr_name, void __unused__ *op_data)
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{
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hid_t attr_id, type, space;
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indentation(indent);
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begin_obj (ATTRIBUTE, attr_name);
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if ((attr_id = H5Aopen_name (attr, attr_name))>= 0) {
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type = H5Aget_type(attr_id);
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space = H5Aget_space(attr_id);
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dump_datatype(type);
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dump_dataspace(space);
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if (display_data) dump_data(attr_id, ATTRIBUTE_DATA);
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H5Tclose(type);
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H5Sclose(space);
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H5Aclose (attr_id);
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indentation (indent);
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end_obj();
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} else {
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indentation (indent+col);
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printf("h5dump error: unable to open attribute.\n");
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indentation (indent);
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end_obj();
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status = 1;
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return FAIL;
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}
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return SUCCEED;
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}
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/*-------------------------------------------------------------------------
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* Function: dump_selected_attr
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*
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* Purpose: dump the selected attribute
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*
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* Return: Success: SUCCEED
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*
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* Failure: FAIL
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*
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* Programmer: Ruey-Hsia Li
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*
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* Modifications:
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*
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*-----------------------------------------------------------------------*/
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static herr_t
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dump_selected_attr (hid_t loc_id, char *name)
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{
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int j;
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char *obj_name, *attr_name;
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hid_t oid, attr_id, type, space;
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H5G_stat_t statbuf;
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j = strlen(name)-1;
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obj_name = malloc ((j+2) * sizeof(char));
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/* find the last / */
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while (name[j] != '/' && j >=0) j--;
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/* object name */
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if (j == -1) strcpy(obj_name, "/");
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else strncpy(obj_name, name, j+1);
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attr_name = name+j+1;
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begin_obj (ATTRIBUTE, name);
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H5Gget_objinfo(loc_id, obj_name, FALSE, &statbuf);
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switch (statbuf.type) {
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case H5G_GROUP:
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if ((oid = H5Gopen (loc_id, obj_name))<0) {
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indentation (col);
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fprintf (stdout, "h5dump error: unable to open %s\n", obj_name);
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end_obj();
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status = 1;
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return FAIL;
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}
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break;
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case H5G_DATASET:
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if ((oid = H5Dopen (loc_id, obj_name))<0) {
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indentation (col);
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fprintf (stdout, "h5dump error: unable to open %s\n", obj_name);
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end_obj();
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status = 1;
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return FAIL;
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}
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break;
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case H5G_TYPE:
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if ((oid = H5Topen(loc_id, obj_name)) < 0 ) {
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indentation (col);
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fprintf (stdout, "h5dump error: unable to open %s\n", obj_name);
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end_obj();
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status = 1;
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return FAIL;
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}
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break;
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default:
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indentation (col);
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fprintf (stdout, "h5dump error: unable to open %s\n", obj_name);
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end_obj();
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status = 1;
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return FAIL;
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}
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if ((attr_id = H5Aopen_name (oid, attr_name))>= 0) {
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type = H5Aget_type(attr_id);
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space = H5Aget_space(attr_id);
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dump_datatype(type);
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dump_dataspace(space);
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if (display_data) dump_data(attr_id, ATTRIBUTE_DATA);
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H5Tclose(type);
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H5Sclose(space);
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H5Aclose (attr_id);
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end_obj();
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} else {
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indentation (col);
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printf("h5dump error: unable to open attribute.\n");
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end_obj();
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status = 1;
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return FAIL;
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}
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switch (statbuf.type) {
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case H5G_GROUP:
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if (H5Gclose (oid) < 0) {
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status = 1;
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return FAIL;
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}
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break;
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case H5G_DATASET:
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if (H5Dclose (oid) < 0 ) {
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status = 1;
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return FAIL;
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}
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break;
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case H5G_TYPE:
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if (H5Tclose(oid) < 0 ) {
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status = 1;
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return FAIL;
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}
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break;
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default:
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status = 1;
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return FAIL;
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}
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free(obj_name);
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return SUCCEED;
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}
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|
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/*-------------------------------------------------------------------------
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* Function: dump all
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*
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* Purpose: Dump everything in the specified object
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*
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* Return: Success: SUCCEED
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*
|
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* Failure: FAIL
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*
|
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* Programmer: Ruey-Hsia Li
|
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*
|
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* Modifications:
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*
|
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*-----------------------------------------------------------------------*/
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static herr_t
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dump_all (hid_t group, const char *name, void __unused__ *op_data)
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{
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hid_t obj;
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char *buf;
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H5G_stat_t statbuf;
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|
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H5Gget_objinfo(group, name, FALSE, &statbuf);
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switch (statbuf.type) {
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case H5G_LINK:
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indentation (indent);
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buf = malloc (statbuf.linklen*sizeof(char));
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begin_obj(SOFTLINK, name);
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indentation (indent+col);
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if (H5Gget_linkval (group, name, statbuf.linklen, buf)>=0)
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printf ("linktarget \"%s\"\n", buf);
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else {
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printf ("h5dump error: unable to get link value.\n");
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status = 1;
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}
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|
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indentation (indent);
|
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end_obj();
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free (buf);
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break;
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|
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case H5G_GROUP:
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if ((obj=H5Gopen (group, name))>=0) {
|
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dump_group (obj, name);
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H5Gclose (obj);
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} else {
|
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printf ("h5dump error: unable to dump group %s\n",name);
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status = 1;
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}
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break;
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|
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case H5G_DATASET:
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|
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if ((obj=H5Dopen (group, name))>=0) {
|
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dump_dataset (obj, name);
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H5Dclose (obj);
|
|
} else {
|
|
printf ("h5dump error: unable to dump dataset %s\n",name);
|
|
status = 1;
|
|
}
|
|
|
|
break;
|
|
|
|
case H5G_TYPE:
|
|
dump_named_datatype (obj, name);
|
|
H5Tclose(obj);
|
|
break;
|
|
|
|
default:
|
|
printf ("Unknown Object %s\n", name);
|
|
status = 1;
|
|
return FAIL;
|
|
break;
|
|
|
|
}
|
|
|
|
|
|
|
|
return SUCCEED;
|
|
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_named_datatype
|
|
*
|
|
* Purpose: Dump named data type
|
|
*
|
|
* Return: void
|
|
*
|
|
* Programmer: Ruey-Hsia Li
|
|
*
|
|
* Modifications: Comments: not yet implemented.
|
|
*
|
|
*-----------------------------------------------------------------------*/
|
|
static void
|
|
dump_named_datatype (hid_t type_id, const char *name) {
|
|
hid_t id;
|
|
/*
|
|
char *fname ;
|
|
hid_t nmembers, mtype;
|
|
int i, ndims, perm[512];
|
|
*/
|
|
|
|
id = type_id; /*doesn't like warning message */
|
|
|
|
indentation (indent);
|
|
begin_obj(DATATYPE, name);
|
|
|
|
indentation(indent+col);
|
|
printf("named data type: not yet implemented.\n");
|
|
|
|
indentation (indent);
|
|
end_obj();
|
|
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_group
|
|
*
|
|
* Purpose: Dump everything within the specified group
|
|
*
|
|
* Return: void
|
|
*
|
|
* Programmer: Ruey-Hsia Li
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-----------------------------------------------------------------------*/
|
|
static void
|
|
dump_group (hid_t gid, const char *name) {
|
|
H5G_stat_t statbuf;
|
|
|
|
indentation (indent);
|
|
begin_obj(GROUP, name);
|
|
indent += col;
|
|
|
|
/* hard link */
|
|
H5Gget_objinfo(gid, ".", TRUE, &statbuf);
|
|
if (statbuf.nlink > 1) {
|
|
indentation (indent);
|
|
printf("%s %s (%s %u) (%s %lu %lu) (%s %lu %lu ) %s\n",
|
|
HARDLINK, BEGIN, NLINK, statbuf.nlink, FILENO, statbuf.fileno[0],
|
|
statbuf.fileno[1], OBJNO, statbuf.objno[0], statbuf.objno[1], END);
|
|
}
|
|
|
|
H5Aiterate (gid, NULL, dump_attr, NULL);
|
|
H5Giterate (gid, ".", NULL, dump_all, NULL);
|
|
indent -= col;
|
|
indentation (indent);
|
|
end_obj();
|
|
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_dataset
|
|
*
|
|
* Purpose: Dump the specified data set
|
|
*
|
|
* Return: void
|
|
*
|
|
* Programmer: Ruey-Hsia Li
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-----------------------------------------------------------------------*/
|
|
static void
|
|
dump_dataset (hid_t did, const char *name) {
|
|
hid_t type, space;
|
|
H5G_stat_t statbuf;
|
|
|
|
indentation (indent);
|
|
begin_obj(DATASET, name);
|
|
|
|
/* hard link */
|
|
H5Gget_objinfo(did, ".", TRUE, &statbuf);
|
|
if (statbuf.nlink > 1) {
|
|
indentation (indent+col);
|
|
printf("%s %s (%s %u) (%s %lu %lu) (%s %lu %lu ) %s\n",
|
|
HARDLINK, BEGIN, NLINK, statbuf.nlink, FILENO, statbuf.fileno[0],
|
|
statbuf.fileno[1], OBJNO, statbuf.objno[0], statbuf.objno[1], END);
|
|
}
|
|
|
|
type = H5Dget_type (did);
|
|
space = H5Dget_space (did);
|
|
dump_datatype(type);
|
|
dump_dataspace(space);
|
|
|
|
if (display_data)
|
|
switch (H5Tget_class(type)) {
|
|
case H5T_INTEGER:
|
|
dump_data(did, DATASET_DATA);
|
|
break;
|
|
case H5T_FLOAT:
|
|
dump_data(did, DATASET_DATA);
|
|
break;
|
|
case H5T_TIME:
|
|
indent += col;
|
|
indentation (indent);
|
|
indent -= col;
|
|
printf("DATA{ not yet implemented.}\n");
|
|
break;
|
|
case H5T_STRING:
|
|
indent += col;
|
|
indentation (indent);
|
|
indent -= col;
|
|
printf("DATA{ not yet implemented.}\n");
|
|
break;
|
|
case H5T_BITFIELD:
|
|
indent += col;
|
|
indentation (indent);
|
|
indent -= col;
|
|
printf("DATA{ not yet implemented.}\n");
|
|
break;
|
|
case H5T_OPAQUE:
|
|
indent += col;
|
|
indentation (indent);
|
|
indent -= col;
|
|
printf("DATA{ not yet implemented.}\n");
|
|
break;
|
|
case H5T_COMPOUND:
|
|
indent += col;
|
|
indentation (indent);
|
|
indent -= col;
|
|
printf("DATA{ not yet implemented.}\n");
|
|
break;
|
|
default: break;
|
|
}
|
|
|
|
indent += col;
|
|
H5Aiterate (did, NULL, dump_attr, NULL);
|
|
indent -= col;
|
|
|
|
H5Tclose(type);
|
|
H5Sclose(space);
|
|
indentation (indent);
|
|
end_obj();
|
|
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_data
|
|
*
|
|
* Purpose: Dump attribute or dataset data
|
|
*
|
|
* Return: void
|
|
*
|
|
* Programmer: Ruey-Hsia Li
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-----------------------------------------------------------------------*/
|
|
static void
|
|
dump_data (hid_t obj_id, int obj_data) {
|
|
|
|
hid_t f_type ;
|
|
size_t size ;
|
|
h5dump_t info;
|
|
|
|
indent += col;
|
|
indentation (indent);
|
|
printf("%s %s", DATA, BEGIN);
|
|
|
|
if (obj_data == DATASET_DATA)
|
|
f_type = H5Dget_type(obj_id);
|
|
else
|
|
f_type = H5Aget_type(obj_id);
|
|
|
|
size = H5Tget_size(f_type);
|
|
|
|
/* Set to all default values and then override */
|
|
memset(&info, 0, sizeof info);
|
|
info.idx_fmt = " (%s) ";
|
|
info.line_ncols = 80;
|
|
|
|
/*
|
|
* If the dataset is a 1-byte integer type then format it as an ASCI
|
|
* character string instead of integers.
|
|
*/
|
|
if (1==size && H5T_INTEGER==H5Tget_class(f_type)) {
|
|
info.elmt_suf1 = "";
|
|
info.elmt_suf2 = "";
|
|
info.idx_fmt = " (%s) \"";
|
|
info.line_suf = "\"";
|
|
printf("\"");
|
|
}
|
|
|
|
|
|
/*
|
|
* Print all the values.
|
|
*/
|
|
|
|
if (h5dump1(stdout, &info, obj_id, -1, obj_data)<0) {
|
|
printf("Unable to print data.");
|
|
}
|
|
|
|
if (1==size && H5T_INTEGER==H5Tget_class(f_type))
|
|
printf("\"");
|
|
|
|
printf("%s\n", END);
|
|
indent -= col;
|
|
|
|
H5Tclose(f_type);
|
|
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function:
|
|
*
|
|
* Purpose: HDF5 dumper
|
|
*
|
|
* Return: Success: 0
|
|
* Failure: 1
|
|
*
|
|
* Programmer: Ruey-Hsia Li
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-----------------------------------------------------------------------*/
|
|
int
|
|
main(int argc, char *argv[]) {
|
|
hid_t fid, gid, dsetid;
|
|
hid_t plist=H5P_DEFAULT;
|
|
const char *fname = NULL;
|
|
int i, curr_arg, display_bb=0, display_all=1;
|
|
int nopts=0, *opts;
|
|
char *buf;
|
|
H5G_stat_t statbuf;
|
|
void __unused__ *op_data;
|
|
hid_t (*func)(void*);
|
|
void *edata;
|
|
/* Disable error reporting */
|
|
H5Eget_auto (&func, &edata);
|
|
H5Eset_auto (NULL, NULL);
|
|
|
|
if (argc < 2 ) {
|
|
usage();
|
|
exit(1);
|
|
}
|
|
|
|
opts = malloc((argc/2) * sizeof (int));
|
|
opts[0] = -1;
|
|
/* parse command line options */
|
|
for (curr_arg = 1; curr_arg < argc; curr_arg++)
|
|
|
|
if (argv[curr_arg][0] == '-') {
|
|
|
|
opts[nopts++] = curr_arg;
|
|
|
|
if (!strcmp(argv[curr_arg],"-h")) {
|
|
|
|
usage();
|
|
exit(0);
|
|
|
|
} else if (!strcmp(argv[curr_arg],"-bb"))
|
|
|
|
display_bb = 1;
|
|
|
|
else if (!strcmp(argv[curr_arg],"-header"))
|
|
|
|
display_data=0;
|
|
|
|
else if (strcmp(argv[curr_arg],"-a") &&
|
|
strcmp(argv[curr_arg],"-d") &&
|
|
strcmp(argv[curr_arg],"-g") &&
|
|
strcmp(argv[curr_arg],"-l")) {
|
|
|
|
fprintf(stderr, "h5dump error: illegal option %s \n",
|
|
argv[curr_arg]);
|
|
usage();
|
|
exit(1);
|
|
} else display_all = 0;
|
|
}
|
|
|
|
/* check names */
|
|
if (argc == 2) {
|
|
if (opts[0] == 1) { /* argv[1] is an option */
|
|
fprintf(stderr, "h5dump error: no <names> or no <file>\n");
|
|
usage();
|
|
exit(1);
|
|
}
|
|
} else {
|
|
for (i = 0; i < nopts-1; i++) {
|
|
if (opts[i+1]-opts[i] == 1) {
|
|
if (strcmp(argv[opts[i]], "-bb") &&
|
|
strcmp(argv[opts[i]], "-header") ) {
|
|
fprintf(stderr,"h5dump error: no <names> after option %s\n",
|
|
argv[opts[i]]);
|
|
usage();
|
|
exit(1);
|
|
}
|
|
}
|
|
}
|
|
if (argc - opts[nopts-1] == 1) {
|
|
fprintf(stderr,"h5dump error: no <file>\n");
|
|
usage();
|
|
exit(1);
|
|
}
|
|
if (argc - opts[nopts-1] == 2) {
|
|
if (strcmp(argv[opts[i]], "-bb") &&
|
|
strcmp(argv[opts[i]], "-header") ) {
|
|
fprintf (stderr, "h5dump error: no <file> or no <names> after option %s\n", argv[opts[i]]);
|
|
usage();
|
|
exit(1);
|
|
}
|
|
}
|
|
}
|
|
|
|
|
|
if (argv[argc-1][0] == '\\') fname = &argv[argc-1][1];
|
|
else fname = argv[argc-1];
|
|
|
|
if ((fid = H5Fopen (fname, H5F_ACC_RDONLY, plist)) < 0) {
|
|
fprintf (stderr, "h5dump error: unable to open file %s \n", fname);
|
|
exit(1);
|
|
}
|
|
|
|
begin_obj("HDF5", fname);
|
|
|
|
if (display_bb) dump_bb();
|
|
|
|
if (display_all) {
|
|
|
|
if ((gid = H5Gopen (fid, "/")) < 0 ) {
|
|
fprintf(stdout, "h5dump error: unable to open root group\n");
|
|
status = 1;
|
|
} else
|
|
dump_group(gid, "/");
|
|
|
|
if (H5Gclose (gid) < 0) {
|
|
fprintf(stdout, "h5dump error: unable to close root group\n");
|
|
status = 1;
|
|
}
|
|
|
|
} else
|
|
|
|
for (i = 0; i < nopts; i++) {
|
|
if (!strcmp(argv[opts[i]],"-a")) {
|
|
|
|
for (curr_arg = opts[i]+1;
|
|
curr_arg < ((i+1)==nopts?(argc-1):opts[i+1]);
|
|
curr_arg++)
|
|
|
|
dump_selected_attr (fid, argv[curr_arg]);
|
|
|
|
} else if (!strcmp(argv[opts[i]],"-d")) {
|
|
for (curr_arg = opts[i]+1;
|
|
curr_arg < ((i+1)==nopts?(argc-1):opts[i+1]);
|
|
curr_arg++) {
|
|
|
|
if ((dsetid = H5Dopen (fid, argv[curr_arg]))<0) {
|
|
begin_obj (DATASET, argv[curr_arg]);
|
|
indentation (col);
|
|
fprintf (stdout, "h5dump error: unable to open %s\n",
|
|
argv[curr_arg]);
|
|
end_obj();
|
|
status = 1;
|
|
} else {
|
|
dump_dataset(dsetid, argv[curr_arg]);
|
|
if (H5Dclose(dsetid)<1) status = 1;
|
|
}
|
|
|
|
}
|
|
|
|
} else if (!strcmp(argv[opts[i]],"-g")) {
|
|
|
|
for (curr_arg = opts[i]+1;
|
|
curr_arg < ((i+1)==nopts?(argc-1):opts[i+1]);
|
|
curr_arg++) {
|
|
if ((gid = H5Gopen (fid, argv[curr_arg])) < 0) {
|
|
begin_obj (GROUP, argv[curr_arg]);
|
|
indentation (col);
|
|
fprintf (stdout, "h5dump error: unable to open %s\n",
|
|
argv[curr_arg]);
|
|
end_obj();
|
|
status = 1;
|
|
} else {
|
|
dump_group(gid, argv[curr_arg]);
|
|
if (H5Gclose (gid) < 0) status = 1;
|
|
}
|
|
}
|
|
|
|
} else if (!strcmp(argv[opts[i]],"-l")) {
|
|
|
|
for (curr_arg = opts[i]+1;
|
|
curr_arg < ((i+1)==nopts?(argc-1):opts[i+1]);
|
|
curr_arg++) {
|
|
|
|
|
|
if (H5Gget_objinfo(fid, argv[curr_arg], FALSE, &statbuf) < 0) {
|
|
begin_obj(SOFTLINK, argv[curr_arg]);
|
|
indentation (col);
|
|
fprintf(stdout, "h5dump error: unable to get obj info from %s\n", argv[curr_arg]);
|
|
end_obj();
|
|
status = 1;
|
|
|
|
} else if (statbuf.type == H5G_LINK) {
|
|
|
|
buf = malloc(statbuf.linklen*sizeof(char));
|
|
begin_obj(SOFTLINK, argv[curr_arg]);
|
|
indentation (col);
|
|
if (H5Gget_linkval (fid, argv[curr_arg], statbuf.linklen, buf)>=0)
|
|
printf ("linktarget \"%s\"\n", buf);
|
|
else {
|
|
fprintf (stdout, "h5dump error: unable to get link value\n");
|
|
status = 1;
|
|
}
|
|
end_obj();
|
|
free(buf);
|
|
|
|
} else {
|
|
begin_obj(SOFTLINK, argv[curr_arg]);
|
|
indentation (col);
|
|
fprintf(stdout, "h5dump error: %s is not a link\n", argv[curr_arg]);
|
|
end_obj();
|
|
status = 1;
|
|
}
|
|
|
|
}
|
|
|
|
}
|
|
}
|
|
|
|
end_obj();
|
|
|
|
free(opts);
|
|
|
|
/* Restore error reporting */
|
|
H5Eset_auto (func, edata);
|
|
if (H5Fclose (fid) < 0) exit(1);
|
|
|
|
return status;
|
|
|
|
}
|