hdf5/INSTALL
Robb Matzke 09aaf83332 [svn-r971] Changes since 19981214
----------------------

./INSTALL
	Added warning that enabling debugging code can adversely
	affect performance even when the debugging isn't turned on at
	run-time. Performance testing shows that under certain
	circumstances (like data type conversions of compound types)
	the H5_timer functions, although only a few lines each,
	contribute a fairly large percent to the execution time.

./src/H5T.c
./src/H5Tpkg.h
./src/H5Tpublic.h
	Improved the H5Tunregister() function to make unregistering
	more flexible.  It takes the same arguments as H5Tregister()
	but also accepts wild cards.  All conversion functions that
	match the H5Tunregister() search criteria are removed from the
	global type conversion table.

	The H5Tregister_hard() and H5Tregister_soft() were combined
	into a single function called H5Tregister() which is the
	counterpart to H5Tunregister(). A new `persistence' argument
	was added to differentiate between the two types of conversion
	functions.

	The application is allowed to register a hard conversion
	function for the no-op conversion path although the library
	isn't obligated to call it (it usually does). This is mostly
	for completeness, but the application might use it to help
	determine if the raw data pipeline was able to use the
	optimized path for the case when no type conversion is
	necessary. The library doesn't allow this path to be
	unregistered although the application can redefine it as often
	as it likes.

	Fixed the type conversion tables in preparation for MT-safety
	and to fix previosly-known design bugs wrt. unregistering
	conversion functions or changing the C function associated
	with a conversion path. The MT-safety stuff is documented in a
	separate white paper.

	Increased the conversion function debugging name from 9
	characters to 31 characters so the output can be more
	descriptive.

	Moved conversion path statistics from the H5T_cdata_t member
	into the conversion path itself.  This makes H5T_cdata_t
	contain only application-visible data structures.

./src/H5A.c
./src/H5D.c
./src/H5Ofill.c
./src/H5P.c
./src/H5T.c
	Improved the way type conversion functions are called so the
	caller doesn't have to check for data type debugging and
	increment type conversion timers and statistics.

	Changed check for no-op conversion since it is now
	application-definable and there may even be more than one
	definition at a time in a multi-threaded application (one
	thread might be using the no-op conversion path when some
	other thread changes its definition -- the first thread still
	sees the original defintion until it's done with the
	operation).

./doc/html/Datatypes.html
	Updated the user guide to reflect the changes to data type
	conversion registration functions.

./bin/trace
./src/H5.c
	Added tracing support for the new H5T_pers_t data type.

./test/dtypes.c
	Added printf to display alignment value if non-aligned data
	types are being tested.

./test/h5test.c
	Modified the H5Tunregister() calls to use the new
	arguments. All 94 of those calls can be replaced by a single
	call to the new H5Tunregister() function.

./src/H5.c
	Added HAVE_GETTIMEOFDAY around an auto variable and
	initialized the elapsed time to zero when gettimeofday() is
	not available.

./src/H5F.c
./src/H5Fprivate.h
./src/H5P.c
	Added an H5*_init() functions which do the same thing as
	H5*_init_interface() but can be called from other packages and
	don't do anything if the interface is already initialized.
	This fixes a couple memory leaks in applications that
	repeatedly close and open the library with H5close().

./src/H5Tconv.c
	Optimized some data alignment code in the hardware conversion
	functions.

	Hardware conversions accumulate statistics about source and
	destination data alignment and print that information when the
	conversion function is unregistered (usually when the
	application exits) if data type debugging is compiled into the
	library and enabled at run-time.

	The conversion caching was cleaned up for the compound data
	type conversion function. It now caches conversion paths in a
	manner that will be MT-safe and is much simpler than the old
	method. Also cleaned up some array index maps.

./src/H5detect.c
	Fixd mispelling of alingemnt.

./src/H5private.h
	Changed `TRUE' to `1' in assignment to interface_initialize_g
	in FUNC_ENTER macro definition.

./tools/testh5dump.sh
	Completely rewritten to make it shorter, better documented,
	and conforming to most of the other test outputs.

	The comparison of the actual output with the expected output
	is insensitive to differences in white space.  The test now
	passes for the first time on Linux where the output width
	wasn't as expected but the output was otherwise correct.

./tools/testfiles/tall-1.ddl
./tools/testfiles/tall-2.ddl
./tools/testfiles/tall-3.ddl
./tools/testfiles/tattr-1.ddl
./tools/testfiles/tattr-2.ddl
./tools/testfiles/tattr-3.ddl
./tools/testfiles/tattr-4.ddl
./tools/testfiles/tcomp-1.ddl
./tools/testfiles/tcomp-2.ddl
./tools/testfiles/tcomp-3.ddl
./tools/testfiles/tcomp-4.ddl
./tools/testfiles/tdset-1.ddl
./tools/testfiles/tdset-2.ddl
./tools/testfiles/tdset-3.ddl
./tools/testfiles/tdset-4.ddl
./tools/testfiles/tgroup-1.ddl
./tools/testfiles/tgroup-2.ddl
./tools/testfiles/tgroup-3.ddl
./tools/testfiles/tlink-1.ddl
./tools/testfiles/tlink-2.ddl
./tools/testfiles/tlink-3.ddl
./tools/testfiles/tlink-4.ddl
./tools/testfiles/tlink-5.ddl
./tools/testfiles/tslink-1.ddl
./tools/testfiles/tslink-2.ddl
	Changed `../h5dump' to just `h5dump'.

./config/alpha-dec-osf4.0
	Added more warning and optimization switches to the native
	compiler.
1998-12-17 14:35:20 -05:00

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This file contains instructions for the installation of HDF5 on
Unix-like systems. First, one must obtain a tarball of the HDF5
release from the ftp://hdf.ncsa.uiuc.edu/pub/dist/HDF5 repository.
The files are available in uncompressed tar, gzip, bzip2, and compress
formats.
For those that like to live dangerously and don't like to read ;-) you
can do the following:
$ tar xf hdf5-1.0.0a.tar
$ cd hdf5-1.0.0a
$ sh configure
$ make # Builds library and tools
$ make test # Builds and runs confidence tests.
# NOTE: if fails, run the
# command in the test directory
$ make install # Optional
Note:
For the users of the Intel TFLOPS machine, a special sequence of steps
for the install may be found in the file: INSTALL.ascired.
=======
Step 0: Install optional third-party packages.
* GNU zlib compression library, version 1.0.2 or later is used for
the `deflate' compression method if available; otherwise no
compression filters will be predefined.
Step 1. Unpack the source tree.
* The tarball will unpack into an hdf5-1.1.0 directory with one of
the following commands:
$ tar xf hdf5-1.1.0.tar OR
$ gunzip <hdf5-1.1.0.tar.gz |tar xf - OR
$ bunzip2 <hdf5-1.1.0.tar.bz2 |tar xf - OR
$ uncompress -c <hdf5-1.1.0.tar.Z |tar xf -
Step 2. Configure.
* HDF5 uses the GNU autoconf program for configuration. Most
installations can be configured by typing just (from the
hdf5-1.1.0 directory)
$ sh configure
* The configuration process can be controlled through environment
variables, command-line switches, and host configuration files.
For a complete list of switches say `sh configure --help'.
* Host configuration files are located in the `config' directory
and are based on architecture name, vendor name, and/or operating
system which are displayed near the beginning of the `configure'
output. Not all hosts require a host configuration file.
* The C compiler and flags, the `ar' and `ranlib' program names,
and the `make' program can be specified with environment
variables if configure doesn't properly detect them and they are
not defined in a host config file.
CC Name of the C compiler.
CFLAGS Switches for the C compiler.
CPPFLAGS Additional switches for the .c -> .o step.
AR Name of the `ar' program.
RANLIB Name of the `ranlib' program or `:' if none.
MAKE Name of the `make' program (GNU make is preferred)
* This version of HDF5 is normally built with various debugging code
enabled. To turn it off add the `--disable-debug' switch to the
configure command. Even if debugging support is compiled into the
library one must still enable the code at runtime with the HDF5_DEBUG
environment variable (see Debugging.html). Including debugging support
in the library (whether it's enabled or not) may incur a significant
run-time penalty.
* This version of HDF5 is normally built with support for symbolic
debugging with dbx or gdb and without compiler optimization
switches. To disable symbolic debugging and enable
optimizations add `--enable-production' to the configure
command.
* This version of HDF5 is normally built with the ability to print
the names, arguments, and return values of all API functions
when they're called. For more information refer to the
Debugging.html file. To disable tracing support add
`--disable-trace' to the configure command.
* Configure will look for the GNU zlib (a compression library) in
the standard places for your environment. If it's installed in
a non-standard place then absolute path names can be specified
with `--with-zlib=INCDIR,LIBDIR' for the include file and/or
library. To prevent detection of zlib use `--without-zlib'.
* The HDF5-to-HDF4 conversion tool requires the HDF4 library and header
files which are auto-detected by configure. If they are in a
non-standard place then absolute path names can be specified with
`--with-hdf4=INCDIR,LIBDIR' for the include file and/or library. To
prevent detection of hdf4 use `--without-hdf4'. Beware of the GNU zlib
that comes with hdf4 -- it's too old to use with hdf5 (hdf4 tools can be
linked with the newer versions of zlib).
* Old versions of gcc (<2.8.0) may experience register allocation
problems on some architectures. If this happens then the
`--disable-hsizet' can be given but the resulting library will
be unable to handle datasets larger than 4GB.
* Libraries, include files, programs, and documentation are
installed (when one says `make install') under /usr/local/lib,
/usr/local/include, /usr/local/bin, and /usr/local/man.
However, if you want them in some other location you can specify
a prefix to use instead of /usr/local. For instance, to install
in /usr/lib, /usr/include, /usr/bin, and /usr/man one would say
$ ./configure --prefix=/usr
The library can be used directly from the source tree without
installing it.
Step 3. Compile library, tests, and programs.
* Build library targets by saying
$ make
Note: If you supplied some other make command through the MAKE
environment variable in the previous step then use that command
instead. The same applies below.
Note: When using GNU make you can add `-j -l6' to the make
command to compile in parallel on SMP machines. Do not give a
number after the `-j' since GNU make will turn it off for
recursive invocations of make.
Step 4. Run confidence tests.
* All confidence tests should be run by saying
$ make test
The command will fail if any test fails, and one will see the
word "*FAIL*" in the output.
* Some old versions of make will report that `test is up to
date'. If this happens then run `make _test' instead or run
`make test' from within the test directory.
* Temporary files will be deleted by each test when it completes,
but may continue to exist in an incomplete state if the test
fails. To prevent deletion of the files define the
HDF5_NOCLEANUP environment variable.
Step 5. Install public files.
* Install the library, header files, and programs by saying:
$ make install
* This step will fail unless you have permission to write to the
installation directories. Of course, you can use the header
files, library, and programs directly out of the source tree if
you like, skipping this step. The directory specified for the
--prefix switch (or "/usr/local") must exist, but the
directories under it are created automatically by make.
* The minimum which must be installed are:
The library:
./src/libhdf5.a
The public header files:
./src/H5*public.h
The main header file:
./src/hdf5.h
The configuration information:
./src/H5config.h
* Additional useful things which are installed:
The tools library:
./tools/libh5tools.a
Some tools:
./tools/h5ls (list file contents)
./tools/h5dump (dump file contents)
./tools/h5repart (repartition file families)
./tools/h5toh4 (hdf5 to hdf4 file converter)
./tools/h5debug (low-level file debugging)
./tools/h5import (a demo)
Step 6. Subscribe to mailing lists.
* Subscribe to the mailing lists described in the README file.