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hdf5/test/tsohm.c
Quincey Koziol 47c3bc7540 [svn-r19272] Description: 
Close out various resource leaks and usages of uninitialized memory that
were flagged by valgrind.  [There's still some more valgrind warnings, but
it's better now... :-/ ]

    Also clean up warnings and code formatting.

Tested on:
    Mac OS X/32 10.6.4 (amazon) w/debug & valgrind
    (h5committest forthcoming)
2010-08-20 16:37:12 -05:00

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/***********************************************************
*
* Test program: tsohm
*
* Test Shared Object Header Messages
*
*************************************************************/
#include "testhdf5.h"
/*
* This file needs to access private information from the H5F package.
* This file also needs to access the file testing code.
*/
#define H5F_PACKAGE
#define H5F_TESTING
#include "H5Fpkg.h" /* File access */
/* Default SOHM values */
#define DEF_NUM_INDEXES 0
const unsigned def_type_flags[H5O_SHMESG_MAX_NINDEXES] = {0,0,0,0,0,0};
const unsigned def_minsizes[H5O_SHMESG_MAX_NINDEXES] = {250,250,250,250,250,250};
#define DEF_L2B 50
#define DEF_B2L 40
/* Non-default SOHM values for testing */
#define TEST_NUM_INDEXES 4
const unsigned test_type_flags[H5O_SHMESG_MAX_NINDEXES] =
{H5O_SHMESG_FILL_FLAG,
H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_ATTR_FLAG,
H5O_SHMESG_SDSPACE_FLAG,
H5O_SHMESG_PLINE_FLAG,
0, 0};
const unsigned test_minsizes[H5O_SHMESG_MAX_NINDEXES] = {0, 2, 40, 100, 3, 1000};
#define TEST_L2B 65
#define TEST_B2L 64
#define FILENAME "tsohm.h5"
#define FILENAME_SRC "tsohm_src.h5"
#define FILENAME_DST "tsohm_dst.h5"
#define NAME_BUF_SIZE 512
/* How much overhead counts as "not much" when converting B-trees, etc. */
#define OVERHEAD_ALLOWED 1.15
#define NUM_DATASETS 10
#define NUM_ATTRIBUTES 100
typedef struct dtype1_struct {
int i1;
char str[10];
int i2;
int i3;
int i4;
int i5;
int i6;
int i7;
int i8;
float f1;
} dtype1_struct;
#define DTYPE2_SIZE 1024
const char *DSETNAME[] = {
"dataset0", "dataset1",
"dataset2", "dataset3",
"dataset4", "dataset5",
"dataset6", "dataset7",
"dataset8", "dataset9",
"dataset10", "dataset11",
NULL
};
const char *EXTRA_DSETNAME[] = {
"ex_dataset0", "ex_dataset1",
"ex_dataset2", "ex_dataset3",
"ex_dataset4", "ex_dataset5",
"ex_dataset6", "ex_dataset7",
"ex_dataset8", "ex_dataset9",
"ex_dataset10", "ex_dataset11",
"ex_dataset12", "ex_dataset13",
"ex_dataset14", "ex_dataset15",
"ex_dataset16", "ex_dataset17",
"ex_dataset18", "ex_dataset19",
NULL
};
#define SOHM_HELPER_NUM_EX_DSETS 20
typedef struct complex_t {
double re;
double im;
} complex_t;
#define ENUM_NUM_MEMBS 20
const char *ENUM_NAME[] = {
"enum_member0", "enum_member1",
"enum_member2", "enum_member3",
"enum_member4", "enum_member5",
"enum_member6", "enum_member7",
"enum_member8", "enum_member9",
"enum_member10", "enum_member11",
"enum_member12", "enum_member13",
"enum_member14", "enum_member15",
"enum_member16", "enum_member17",
"enum_member18", "enum_member19",
NULL
};
const int ENUM_VAL[] = {
0, 13,
-500, 63,
64, -64,
65, 2048,
1, 2,
-1, 7,
130, -5000,
630, 640,
-640, 650,
20480, 10,
-1001, -10
};
#define SIZE2_RANK1 6
#define SIZE2_RANK2 10
#define SIZE2_DIMS {1, 2, 3, 4, 5, 6, 7, 8, 9, 10}
#define LONG_STRING "00 index. A long string used for testing. To create new strings, set the first two characters to be some ASCII number other than 00, such as 01."
/* Struct returned from size2_helper function */
typedef struct size2_helper_struct {
h5_stat_size_t empty_size;
h5_stat_size_t first_dset;
h5_stat_size_t second_dset;
h5_stat_size_t dsets1;
h5_stat_size_t dsets2;
h5_stat_size_t interleaved;
h5_stat_size_t attrs1;
h5_stat_size_t attrs2;
} size2_helper_struct;
/* Number of distinct messages for the sohm_delete test */
#define DELETE_NUM_MESGS 7
#define HALF_DELETE_NUM_MESGS 3
#define DELETE_DIMS {1,1,1,1,1,1,1}
#define DELETE_MIN_MESG_SIZE 10
#define DELETE_MAX_MESG_SIZE 60
/* Number of dimensions in extend_dset test */
#define EXTEND_NDIMS 2
/* Dimensions for external_dtype test */
#define NX 10
#define NY 10
/* Helper function prototypes */
static hid_t make_dtype_1(void);
static hid_t make_dtype_2(void);
static hid_t close_reopen_file(hid_t file, const char* filename, hid_t fapl_id);
static void test_sohm_attrs(void);
#ifdef NOT_NOW
static void size2_dump_struct(const char *name, size2_helper_struct *sizes);
#endif /* NOT_NOW */
static void size2_verify(void);
static void test_sohm_delete(void);
static void test_sohm_delete_revert(void);
static void test_sohm_extlink(void);
/****************************************************************
**
** check_fcpl_values(): Helper function for test_sohm_fcpl.
** Verifies that the *_in and *_out parameters are equal.
**
****************************************************************/
static void check_fcpl_values(hid_t fcpl_id, const unsigned nindexes_in,
const unsigned *flags_in, const unsigned *minsizes_in,
unsigned l2b, unsigned b2l)
{
unsigned num_indexes;
unsigned index_flags, min_mesg_size;
unsigned list_size, btree_size;
unsigned x;
herr_t ret;
/* Verify number of indexes is set to default */
ret = H5Pget_shared_mesg_nindexes(fcpl_id, &num_indexes);
CHECK_I(ret, "H5Pget_shared_mesg_nindexes");
VERIFY(num_indexes, nindexes_in, "H5Pget_shared_mesg_nindexes");
/* Verify index flags and minsizes are set */
for(x=0; x<num_indexes; ++x)
{
ret = H5Pget_shared_mesg_index(fcpl_id, x, &index_flags, &min_mesg_size);
CHECK_I(ret, "H5Pget_shared_mesg_index");
VERIFY(index_flags, flags_in[x], "H5Pget_shared_mesg_index");
VERIFY(min_mesg_size, minsizes_in[x], "H5Pget_shared_mesg_index");
}
/* Check list-to-btree and btree-to-list values */
ret = H5Pget_shared_mesg_phase_change(fcpl_id, &list_size, &btree_size);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
VERIFY(list_size, l2b, "H5Pset_shared_mesg_phase_change");
VERIFY(btree_size, b2l, "H5Pset_shared_mesg_phase_change");
}
/****************************************************************
**
** test_sohm_fcpl(): Test File Creation Property Lists.
**
****************************************************************/
static void test_sohm_fcpl(void)
{
hid_t fid = -1;
hid_t fcpl_id = -1;
hid_t fcpl2_id = -1;
unsigned x;
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing File Creation Properties for Shared Messages\n"));
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
/* Verify fcpl values */
check_fcpl_values(fcpl_id, DEF_NUM_INDEXES, def_type_flags, def_minsizes, DEF_L2B, DEF_B2L);
/* Create a file with this fcpl and make sure that all the values can be
* retrieved.
*/
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(fid, "H5Fcreate");
fcpl2_id = H5Fget_create_plist(fid);
CHECK_I(fcpl2_id, "H5Fcreate");
/* Verify fcpl values */
check_fcpl_values(fcpl2_id, DEF_NUM_INDEXES, def_type_flags, def_minsizes, DEF_L2B, DEF_B2L);
ret = H5Pclose(fcpl2_id);
CHECK_I(ret, "H5Pclose");
/* Close and re-open the file. Make sure that fcpl values are still
* correct.
*/
ret = H5Fclose(fid);
CHECK_I(ret, "H5Fclose");
fid = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(fid, "H5Fopen");
fcpl2_id = H5Fget_create_plist(fid);
CHECK_I(ret, "H5Fcreate");
/* Verify fcpl values */
check_fcpl_values(fcpl2_id, DEF_NUM_INDEXES, def_type_flags, def_minsizes, DEF_L2B, DEF_B2L);
/* Clean up */
ret = H5Pclose(fcpl2_id);
CHECK_I(ret, "H5Pclose");
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
ret = H5Fclose(fid);
CHECK_I(ret, "H5Fclose");
/* Start over with a non-default fcpl */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
/* Set up index values */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, TEST_NUM_INDEXES);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
for(x = 0; x < TEST_NUM_INDEXES; ++x) {
ret = H5Pset_shared_mesg_index(fcpl_id, x, test_type_flags[x], test_minsizes[x]);
CHECK_I(ret, "H5Pset_shared_mesg_index");
} /* end for */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, TEST_L2B, TEST_B2L);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
check_fcpl_values(fcpl_id, TEST_NUM_INDEXES, test_type_flags, test_minsizes, TEST_L2B, TEST_B2L);
/* Use the fcpl to create a file and get it back again */
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(fid, "H5Fcreate");
fcpl2_id = H5Fget_create_plist(fid);
CHECK_I(fcpl2_id, "H5Fcreate");
/* Verify fcpl values */
check_fcpl_values(fcpl2_id, TEST_NUM_INDEXES, test_type_flags, test_minsizes, TEST_L2B, TEST_B2L);
ret = H5Pclose(fcpl2_id);
CHECK_I(ret, "H5Pclose");
/* Close and re-open the file. Make sure that fcpl values are still
* correct.
*/
ret = H5Fclose(fid);
CHECK_I(ret, "H5Fclose");
fid = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(fid, "H5Fopen");
fcpl2_id = H5Fget_create_plist(fid);
CHECK_I(ret, "H5Fcreate");
/* Verify fcpl values */
check_fcpl_values(fcpl2_id, TEST_NUM_INDEXES, test_type_flags, test_minsizes, TEST_L2B, TEST_B2L);
/* Clean up */
ret = H5Pclose(fcpl2_id);
CHECK_I(ret, "H5Pclose");
ret = H5Fclose(fid);
CHECK_I(ret, "H5Fclose");
/* Test giving bogus values to H5P* functions */
H5E_BEGIN_TRY {
/* Trying to create too many indexes should fail */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, H5O_SHMESG_MAX_NINDEXES + 1);
VERIFY(ret, -1, "H5Pset_shared_mesg_nindexes");
/* Trying to set index to an index higher than the current number
* of indexes should fail.
*/
ret = H5Pset_shared_mesg_index(fcpl_id, H5O_SHMESG_MAX_NINDEXES, 0, 15);
VERIFY(ret, -1, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, TEST_NUM_INDEXES, 0, 15);
VERIFY(ret, -1, "H5Pset_shared_mesg_index");
/* Setting an unknown flag (all flags + 1) should fail */
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_ALL_FLAG + 1, 15);
VERIFY(ret, -1, "H5Pset_shared_mesg_index");
/* Try setting two different indexes to hold fill messages. They
* should hold even very small messages for testing, even though we
* wouldn't really want to share such tiny messages in the real world.
*/
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_FILL_FLAG, 15);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_FILL_FLAG, 15);
CHECK_I(ret, "H5Pset_shared_mesg_index");
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
VERIFY(fid, -1, "H5Fcreate");
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_FILL_FLAG, 15);
CHECK_I(ret, "H5Pset_shared_mesg_index");
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
VERIFY(fid, -1, "H5Fcreate");
/* Test list/btree cutoffs. We can set these to any positive value,
* but if the list max is less than the btree min we'll get an error
* when the file is created.
*/
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 10, 12);
VERIFY(ret, -1, "H5Pset_shared_mesg_phase_change");
/* Setting them to extremely large values should also fail */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, H5O_SHMESG_MAX_LIST_SIZE + 1, 0);
VERIFY(ret, -1, "H5Pset_shared_mesg_phase_change");
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 10, H5O_SHMESG_MAX_LIST_SIZE + 10);
VERIFY(ret, -1, "H5Pset_shared_mesg_phase_change");
ret = H5Pset_shared_mesg_phase_change(fcpl_id, H5O_SHMESG_MAX_LIST_SIZE, H5O_SHMESG_MAX_LIST_SIZE+1);
VERIFY(ret, -1, "H5Pset_shared_mesg_phase_change");
} H5E_END_TRY
/* Actually, the list max can be exactly 1 greater than the
* btree min, but no more. Also, the errors above shouldn't
* have corrupted the fcpl, although we do need to reset the
* second index that we changed above.
*/
ret = H5Pset_shared_mesg_index(fcpl_id, 1, test_type_flags[1], 15);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 10, 11);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(fid, "H5Fcreate");
ret = H5Fclose(fid);
CHECK_I(ret, "H5Fclose");
/* Test edge cases; H5O_SHMESG_MAX_NINDEXES and H5O_SHMESG_MAX_LIST_SIZE should be
* valid values. Also, creating a file with uninitialized indexes
* (indexes 3-5) should work.
*/
ret = H5Pset_shared_mesg_nindexes(fcpl_id, H5O_SHMESG_MAX_NINDEXES);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_phase_change(fcpl_id, H5O_SHMESG_MAX_LIST_SIZE, H5O_SHMESG_MAX_LIST_SIZE);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(fid, "H5Fcreate");
/* Clean up */
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
ret = H5Fclose(fid);
CHECK_I(ret, "H5Fclose");
}
/*-------------------------------------------------------------------------
* Function: make_dtype_1
*
* Purpose: Creates a complicated datatype for use in testing
* shared object header messages. The important thing is that
* the datatypes must take a lot of space to store on disk.
*
* Return: Success: datatype ID (should be closed by calling function)
* Failure: negative
*
* Programmer: James Laird
* Saturday, August 26, 2006
*
*-------------------------------------------------------------------------
*/
static hid_t
make_dtype_1(void)
{
hid_t dtype1_id = -1;
hid_t str_id = -1;
/* Create compound datatype. */
if((dtype1_id = H5Tcreate(H5T_COMPOUND, sizeof(struct dtype1_struct))) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i1", HOFFSET(dtype1_struct, i1), H5T_NATIVE_INT) < 0) TEST_ERROR
str_id = H5Tcopy(H5T_C_S1);
if(H5Tset_size(str_id, (size_t)10) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "string", HOFFSET(dtype1_struct, str), str_id) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i2", HOFFSET(dtype1_struct, i2), H5T_NATIVE_INT) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i3", HOFFSET(dtype1_struct, i3), H5T_NATIVE_INT) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i4", HOFFSET(dtype1_struct, i4), H5T_NATIVE_INT) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i5", HOFFSET(dtype1_struct, i5), H5T_NATIVE_INT) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i6", HOFFSET(dtype1_struct, i6), H5T_NATIVE_INT) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i7", HOFFSET(dtype1_struct, i7), H5T_NATIVE_INT) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "i8", HOFFSET(dtype1_struct, i8), H5T_NATIVE_INT) < 0) TEST_ERROR
if(H5Tinsert(dtype1_id, "f1", HOFFSET(dtype1_struct, f1), H5T_NATIVE_FLOAT) < 0) TEST_ERROR
if(H5Tclose(str_id) < 0) TEST_ERROR
return dtype1_id;
error:
H5E_BEGIN_TRY {
H5Tclose(str_id);
H5Tclose(dtype1_id);
} H5E_END_TRY
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_dtype_2
*
* Purpose: Creates complicated datatypes for use in testing
* shared object header messages. The important thing is that
* the datatypes must take a lot of space to store on disk.
*
* Return: Success: datatype ID (should be closed by calling function)
* Failure: negative
*
* Programmer: James Laird
* Saturday, August 26, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static hid_t
make_dtype_2(void)
{
hid_t dtype2_id = -1;
hid_t enum_id= -1;
hid_t int_id=-1;
int x;
hsize_t dims[] = {2, 1, 2, 4};
size_t size;
/* Create an int with a strange precision */
if((int_id = H5Tcopy(H5T_NATIVE_INT)) < 0) TEST_ERROR
if(H5Tset_precision(int_id, (size_t)24) < 0) TEST_ERROR
/* Create an enumeration using that int */
if((enum_id = H5Tenum_create(int_id)) < 0) TEST_ERROR
for(x = 0; x < ENUM_NUM_MEMBS; x++)
if(H5Tenum_insert(enum_id, ENUM_NAME[x], &ENUM_VAL[x]) < 0) TEST_ERROR
/* Create arrays of arrays of arrays of enums */
if((dtype2_id = H5Tarray_create2(enum_id, 3, dims)) < 0) TEST_ERROR
if((dtype2_id = H5Tarray_create2(dtype2_id, 4, dims)) < 0) TEST_ERROR
if((dtype2_id = H5Tarray_create2(dtype2_id, 2, dims)) < 0) TEST_ERROR
if((dtype2_id = H5Tarray_create2(dtype2_id, 1, dims)) < 0) TEST_ERROR
if(H5Tclose(enum_id) < 0) TEST_ERROR
if(H5Tclose(int_id) < 0) TEST_ERROR
/* Check the datatype size. If this is different than the #defined
* size then the fills values will have the wrong size.
*/
size = H5Tget_size(dtype2_id);
if(size != DTYPE2_SIZE) TEST_ERROR
return dtype2_id;
error:
H5E_BEGIN_TRY {
H5Tclose(dtype2_id);
H5Tclose(enum_id);
H5Tclose(int_id);
} H5E_END_TRY
return -1;
}
/*-------------------------------------------------------------------------
* Function: close_reopen_file
*
* Purpose: Closes a file and then reopens it. Used to ensure that
* SOHMs are written to and read from disk
*
* Return: Success: new hid_t for the file
* Failure: Negative
*
* Programmer: James Laird
* Wednesday, October 4, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static hid_t
close_reopen_file(hid_t file, const char* filename, hid_t fapl_id)
{
hid_t fid;
if(H5Fclose(file) < 0) FAIL_STACK_ERROR
if((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) < 0) FAIL_STACK_ERROR
return(fid);
error:
return -1;
}
/*-------------------------------------------------------------------------
* Function: size1_helper
*
* Purpose: Creates object headers that use a large datatype message.
*
* Used in test_sohm_basic. Should close the file ID passed in.
* Set test_file_closing to 1 to add file closing and reopening
* whenever possible (to test that SOHMs are written correctly
* on disk and not just in memory).
*
* Return: Success: file ID (may not be the same one passed in)
* Failure: Negative
*
* Programmer: James Laird
* Monday, April 10, 2006
*
*-------------------------------------------------------------------------
*/
static hid_t
size1_helper(hid_t file, const char* filename, hid_t fapl_id, int test_file_closing)
{
dtype1_struct wdata;
dtype1_struct rdata;
hid_t dtype1_id = -1;
hid_t space_id = -1;
hid_t dset_id = -1;
hsize_t dim1[1];
int x;
/* Closing and re-opening the file takes a long time on systems without
* local disks. Don't close and reopen if express testing is enabled.
*/
if(GetTestExpress() > 1)
test_file_closing = 0;
/* Intialize wdata */
HDmemset(&wdata, 0, sizeof(wdata));
wdata.i1 = 11;
HDstrcpy(wdata.str, "string");
wdata.i2 = 22;
wdata.i3 = 33;
wdata.i4 = 44;
wdata.i5 = 55;
wdata.i6 = 66;
wdata.i7 = 77;
wdata.i8 = 88;
wdata.f1 = 0.0;
/* Intialize rdata */
HDmemset(&rdata, 0, sizeof(rdata));
if((dtype1_id = make_dtype_1()) < 0) TEST_ERROR
/* Create the dataspace and dataset */
dim1[0] = 1;
if((space_id = H5Screate_simple(1, dim1, NULL)) < 0) TEST_ERROR
if((dset_id = H5Dcreate2(file, DSETNAME[0], dtype1_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR
/* Test writing and reading */
if(H5Dwrite(dset_id, dtype1_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, &wdata) < 0) FAIL_STACK_ERROR
if(H5Dread(dset_id, dtype1_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rdata) < 0) FAIL_STACK_ERROR
if(rdata.i1 != wdata.i1 || rdata.i2 != wdata.i2 || HDstrcmp(rdata.str, wdata.str)) {
H5_FAILED(); AT();
printf("incorrect read data\n");
goto error;
} /* end if */
if(H5Dclose(dset_id) < 0) FAIL_STACK_ERROR
/* Close and re-open the file if requested*/
if(test_file_closing)
if((file = close_reopen_file(file, filename, fapl_id)) < 0) TEST_ERROR
/* Create more datasets with the same datatype */
if((dset_id = H5Dcreate2(file, DSETNAME[1], dtype1_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR
if(H5Dclose(dset_id) < 0) FAIL_STACK_ERROR
/* Close and re-open the file if requested*/
if(test_file_closing)
if((file = close_reopen_file(file, filename, fapl_id)) < 0) TEST_ERROR
if((dset_id = H5Dcreate2(file, DSETNAME[2], dtype1_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR
if(H5Dclose(dset_id) < 0) TEST_ERROR
/* Close and re-open the file if requested*/
if(test_file_closing)
if((file = close_reopen_file(file, filename, fapl_id)) < 0) TEST_ERROR
if((dset_id = H5Dcreate2(file,DSETNAME[3],dtype1_id,space_id,H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR
/* Write data to dataset 3 for later */
if(H5Dwrite(dset_id, dtype1_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, &wdata) < 0) TEST_ERROR
if(H5Dclose(dset_id) < 0) TEST_ERROR
if(H5Tclose(dtype1_id) < 0) TEST_ERROR
/* Close and re-open the file if requested*/
if(test_file_closing)
if((file = close_reopen_file(file, filename, fapl_id)) < 0) TEST_ERROR
/* Make sure the data has been written successfully */
if((dset_id = H5Dopen2(file, DSETNAME[0], H5P_DEFAULT)) < 0) TEST_ERROR
if((dtype1_id = H5Dget_type(dset_id)) < 0) TEST_ERROR
/* Read data back again */
HDmemset(&rdata, 0, sizeof(rdata));
if(H5Dread(dset_id, dtype1_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rdata) < 0) {
H5_FAILED(); AT();
printf("Can't read data\n");
goto error;
} /* end if */
if(rdata.i1 != wdata.i1 || rdata.i2 != wdata.i2 || HDstrcmp(rdata.str, wdata.str)) {
H5_FAILED(); AT();
printf("incorrect read data\n");
goto error;
} /* end if */
if(H5Dclose(dset_id) < 0) TEST_ERROR
/* Create several copies of the dataset (this increases the amount of space saved by sharing the datatype message) */
for(x = 0; x < SOHM_HELPER_NUM_EX_DSETS; x++) {
if((dset_id = H5Dcreate2(file, EXTRA_DSETNAME[x], dtype1_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR
if(H5Dclose(dset_id) < 0) TEST_ERROR
/* Close and re-open the file if requested*/
if(test_file_closing)
if((file = close_reopen_file(file, filename, fapl_id)) < 0) TEST_ERROR
} /* end for */
if(H5Tclose(dtype1_id) < 0) TEST_ERROR
if(H5Sclose(space_id) < 0) TEST_ERROR
/* Ensure that we can still read data back from dataset 3 */
if((dset_id = H5Dopen2(file, DSETNAME[3], H5P_DEFAULT)) < 0) TEST_ERROR
if((dtype1_id = H5Dget_type(dset_id)) < 0) TEST_ERROR
/* Read data back again */
HDmemset(&rdata, 0, sizeof(rdata));
if(H5Dread(dset_id, dtype1_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rdata) < 0) {
H5_FAILED(); AT();
printf("Can't read data\n");
goto error;
} /* end if */
if(rdata.i1 != wdata.i1 || rdata.i2 != wdata.i2 || HDstrcmp(rdata.str, wdata.str)) {
H5_FAILED(); AT();
printf("incorrect read data\n");
goto error;
} /* end if */
if(H5Dclose(dset_id) < 0) TEST_ERROR
if(H5Tclose(dtype1_id) < 0) TEST_ERROR
return file;
error:
H5E_BEGIN_TRY {
H5Sclose(space_id);
H5Tclose(dtype1_id);
H5Dclose(dset_id);
H5Fclose(file);
} H5E_END_TRY
return -1;
}
/*-------------------------------------------------------------------------
* Function: test_sohm_size1
*
* Purpose: Tests shared object header messages with a large datatype
*
* Programmer: James Laird
* Monday, April 10, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void test_sohm_size1(void)
{
hid_t file = -1;
hid_t fcpl_id = -1;
hid_t fapl_id = -1;
hsize_t sohm_oh_size;
hsize_t sohm_btree_oh_size;
h5_stat_size_t norm_empty_filesize;
h5_stat_size_t sohm_empty_filesize;
h5_stat_size_t sohm_btree_empty_filesize;
h5_stat_size_t norm_final_filesize;
h5_stat_size_t sohm_final_filesize;
h5_stat_size_t sohm_btree_final_filesize;
h5_stat_size_t norm_final_filesize2;
h5_stat_size_t sohm_final_filesize2;
h5_stat_size_t sohm_btree_final_filesize2;
H5O_info_t oinfo;
unsigned num_indexes = 1;
unsigned index_flags = H5O_SHMESG_DTYPE_FLAG;
unsigned min_mesg_size = 50;
unsigned list_max = 11;
unsigned btree_min = 10;
herr_t ret;
MESSAGE(5, ("Testing that shared datatypes save space\n"));
/* Create a FAPL with "semi" close degree, to detect dangling IDs */
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
CHECK_I(fapl_id, "H5Pcreate");
ret = H5Pset_fclose_degree(fapl_id, H5F_CLOSE_SEMI);
CHECK_I(ret, "H5Pset_fclose_degree");
/* Create a file with SOHMs disabled and get its size */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 0);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, fapl_id);
CHECK_I(file, "H5Fcreate");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
/* Get the file size */
norm_empty_filesize = h5_get_file_size(FILENAME, fapl_id);
/* Add a bunch of large datatypes to the file */
file = H5Fopen(FILENAME, H5F_ACC_RDWR, fapl_id);
CHECK_I(file, "H5Fopen");
file = size1_helper(file, FILENAME, fapl_id, 0);
CHECK_I(file, "size1_helper");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
/* Get the new file size */
norm_final_filesize = h5_get_file_size(FILENAME, fapl_id);
/* Use the same property list to create a new file. */
file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, fapl_id);
CHECK_I(file, "H5Fcreate");
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
/* Add the same large datatypes, but keep closing and re-opening the file */
file = size1_helper(file, FILENAME, fapl_id, 1);
CHECK_I(file, "size1_helper");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
/* Get the file size */
norm_final_filesize2 = h5_get_file_size(FILENAME, fapl_id);
/* Now do the same thing for a file with SOHMs enabled */
/* Create FCPL with SOHMs enabled */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
/* Tests one index holding only datatype messages */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, num_indexes);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, index_flags, min_mesg_size);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_phase_change(fcpl_id, list_max, btree_min);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Create a file */
file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, fapl_id);
CHECK_I(file, "H5Fcreate");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
sohm_empty_filesize = h5_get_file_size(FILENAME, fapl_id);
/* Add a bunch of datatypes to this file */
file = H5Fopen(FILENAME, H5F_ACC_RDWR, fapl_id);
CHECK_I(file, "H5Fopen");
file = size1_helper(file, FILENAME, fapl_id, 0);
CHECK_I(file, "size1_helper");
/* Get the size of a dataset object header */
ret = H5Oget_info_by_name(file, DSETNAME[0], &oinfo, H5P_DEFAULT);
CHECK_I(ret, "H5Oget_info_by_name");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
sohm_oh_size = oinfo.hdr.space.total;
/* Get the new file size */
sohm_final_filesize = h5_get_file_size(FILENAME, fapl_id);
/* Use the same property list to create a new file. */
file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, fapl_id);
CHECK_I(file, "H5Fcreate");
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
/* Add the same large datatypes, but keep closing and re-opening the file */
file = size1_helper(file, FILENAME, fapl_id, 1);
CHECK_I(file, "size1_helper");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
/* Get the file size */
sohm_final_filesize2 = h5_get_file_size(FILENAME, fapl_id);
/* Create FCPL with SOHMs enabled that uses a B-tree index */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
/* Tests one index holding only datatype messages */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, num_indexes);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, index_flags, min_mesg_size);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Create a file */
file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, fapl_id);
CHECK_I(file, "H5Fcreate");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
sohm_btree_empty_filesize = h5_get_file_size(FILENAME, fapl_id);
/* Add a bunch of datatypes to this file */
file = H5Fopen(FILENAME, H5F_ACC_RDWR, fapl_id);
CHECK_I(file, "H5Fopen");
file = size1_helper(file, FILENAME, fapl_id, 0);
CHECK_I(file, "size1_helper");
/* Get the size of a dataset object header */
ret = H5Oget_info_by_name(file, DSETNAME[0], &oinfo, H5P_DEFAULT);
CHECK_I(ret, "H5Oget_info_by_name");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
sohm_btree_oh_size = oinfo.hdr.space.total;
/* Get the new file size */
sohm_btree_final_filesize = h5_get_file_size(FILENAME, fapl_id);
/* Use the same property list to create a new file. */
file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, fapl_id);
CHECK_I(file, "H5Fcreate");
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
/* Add the same large datatypes, but keep closing and re-opening the file */
file = size1_helper(file, FILENAME, fapl_id, 1);
CHECK_I(file, "size1_helper");
ret = H5Fclose(file);
CHECK_I(ret, "H5Fclose");
/* Get the file size */
sohm_btree_final_filesize2 = h5_get_file_size(FILENAME, fapl_id);
/* Check that all sizes make sense */
/* Object headers in SOHM files should be smaller than normal object
* headers. How the SOHM messages are stored shouldn't affect the
* size of the object header.
*/
if(sohm_oh_size != sohm_btree_oh_size)
VERIFY(sohm_btree_oh_size, 1, "H5Oget_info_by_name");
/* Both sohm files should be bigger than a normal file when empty.
* It's hard to say whether a B-tree with no nodes allocated should be
* smaller than a list with SOHM_HELPER_NUM_DTYPES elements.
* The sizes here shouldn't really be 1; it's just used to ensure that the
* error code triggers.
*/
if(sohm_empty_filesize <= norm_empty_filesize)
VERIFY(sohm_empty_filesize, 1, "h5_get_file_size");
if(sohm_btree_empty_filesize <= norm_empty_filesize)
VERIFY(sohm_btree_empty_filesize, 1, "h5_get_file_size");
/* When full, the sohm btree file should be smaller than the normal file.
* The sohm list file should be at least as small, since it doesn't need the
* overhead of a B-tree.
*/
if(sohm_btree_final_filesize >= norm_final_filesize)
VERIFY(sohm_btree_final_filesize, 1, "h5_get_file_size");
if(sohm_final_filesize > sohm_btree_final_filesize)
VERIFY(sohm_final_filesize, 1, "h5_get_file_size");
/* This shouldn't change even if we open and close the file */
if(sohm_btree_final_filesize2 >= norm_final_filesize2)
VERIFY(sohm_btree_final_filesize2, 1, "h5_get_file_size");
if(sohm_final_filesize2 > sohm_btree_final_filesize2)
VERIFY(sohm_final_filesize2, 1, "h5_get_file_size");
ret = H5Pclose(fapl_id);
CHECK_I(ret, "H5Pclose");
}
/*-------------------------------------------------------------------------
* Function: sohm_attr_helper
*
* Purpose: Given an fcpl, tests creating attributes with and without
* committed datatypes.
*
* Programmer: James Laird
* Thursday, November 30, 2006
*
*-------------------------------------------------------------------------
*/
static void sohm_attr_helper(hid_t fcpl_id)
{
hid_t file_id;
hid_t type_id;
hid_t space_id;
hid_t group_id;
hid_t attr_id, attr_id2;
hsize_t dims = 2;
int wdata[2] = {7, 42};
int rdata[2];
herr_t ret;
size_t x;
/*----------------------------------------------------------------------------
* Test attribute with transient datatype
*/
/* Create a file using the fcpl */
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
/* Create a normal datatype and dataset */
type_id = H5Tcopy(H5T_NATIVE_INT);
CHECK_I(type_id, "H5Tcopy");
space_id = H5Screate_simple(1, &dims, &dims);
CHECK_I(space_id, "H5Screate_simple");
/* Create and verify an attribute on a group */
group_id = H5Gcreate2(file_id, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(group_id, "H5Gcreate2");
attr_id = H5Acreate2(group_id, "attribute", type_id, space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, H5T_NATIVE_INT, wdata);
CHECK_I(ret, "H5Awrite");
/* Close the datatype and group */
ret = H5Tclose(type_id);
CHECK_I(ret, "H5Tclose");
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
/* Flush the file to force data to be written */
ret = H5Fflush(file_id, H5F_SCOPE_GLOBAL);
CHECK_I(ret, "H5Fflush");
/* Verify */
HDmemset(rdata, 0, sizeof(rdata));
ret = H5Aread(attr_id, H5T_NATIVE_INT, rdata);
CHECK_I(ret, "H5Aread");
for(x = 0; x < (size_t)dims; ++x)
VERIFY(rdata[x], wdata[x], "H5Aread");
/* Cleanup */
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
/*----------------------------------------------------------------------------
* Test attribute with committed datatype
*/
/* Repeat with a committed datatype */
type_id = H5Tcopy(H5T_NATIVE_INT);
CHECK_I(type_id, "H5Tcopy");
ret = H5Tcommit2(file_id, "datatype", type_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(ret, "H5Tcommit2");
/* Create and verify an attribute */
group_id = H5Gcreate2(file_id, "another_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(group_id, "H5Gcreate2");
attr_id = H5Acreate2(group_id, "attribute", type_id, space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, H5T_NATIVE_INT, wdata);
CHECK_I(ret, "H5Awrite");
/* Close the datatype and group */
ret = H5Tclose(type_id);
CHECK_I(ret, "H5Tclose");
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
/* Flush the file to force data to be written */
ret = H5Fflush(file_id, H5F_SCOPE_GLOBAL);
CHECK_I(ret, "H5Fflush");
/* Verify */
HDmemset(rdata, 0, sizeof(rdata));
ret = H5Aread(attr_id, H5T_NATIVE_INT, rdata);
CHECK_I(ret, "H5Aread");
for(x = 0; x < (size_t)dims; ++x)
VERIFY(rdata[x], wdata[x], "H5Aread");
/* Cleanup */
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
/*----------------------------------------------------------------------------
* Test attribute operation with two ID handles
*/
/* Create and verify an attribute */
group_id = H5Gcreate2(file_id, "yet_another_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(group_id, "H5Gcreate2");
attr_id = H5Acreate2(group_id, "attribute", H5T_NATIVE_INT, space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
/* Open the attribute to get another handle */
attr_id2 = H5Aopen(group_id, "attribute", H5P_DEFAULT);
CHECK_I(attr_id2, "H5Aopen");
ret = H5Awrite(attr_id, H5T_NATIVE_INT, wdata);
CHECK_I(ret, "H5Awrite");
/* Close the group */
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
/* Flush the file to force data to be written */
ret = H5Fflush(file_id, H5F_SCOPE_GLOBAL);
CHECK_I(ret, "H5Fflush");
/* Verify the data with another ID handle */
HDmemset(rdata, 0, sizeof(rdata));
ret = H5Aread(attr_id2, H5T_NATIVE_INT, rdata);
CHECK_I(ret, "H5Aread");
for(x = 0; x < (size_t)dims; ++x)
VERIFY(rdata[x], wdata[x], "H5Aread");
/* Cleanup */
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
ret = H5Aclose(attr_id2);
CHECK_I(ret, "H5Aclose");
ret = H5Sclose(space_id);
CHECK_I(ret, "H5Sclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
}
/*-------------------------------------------------------------------------
* Function: test_sohm_attrs
*
* Purpose: Attributes can be shared and can also contain shared
* datatype and dataspace messages. Committed datatypes
* shouldn't be shared.
*
* Test permutations of this.
*
* Programmer: James Laird
* Thursday, November 30, 2006
*
*-------------------------------------------------------------------------
*/
static void test_sohm_attrs(void)
{
hid_t fcpl_id;
herr_t ret;
MESSAGE(5, ("Testing that shared messages work with attributes\n"));
/* Create an fcpl with no shared messages */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 0);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
/* Make sure attributes can be read with these settings (they'd better!) */
sohm_attr_helper(fcpl_id);
/* Run tests with only one kind of message to be shared */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ATTR_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
/* Verify */
sohm_attr_helper(fcpl_id);
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_DTYPE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
/* Run with any two types shared */
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_DTYPE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ATTR_FLAG | H5O_SHMESG_DTYPE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_ATTR_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
/* Run test with all three kinds of message shared */
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_ATTR_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
/* Try using two indexes */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ATTR_FLAG | H5O_SHMESG_DTYPE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_SDSPACE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_DTYPE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_ATTR_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
/* One index for each kind of message */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 3);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 2, H5O_SHMESG_SDSPACE_FLAG, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
sohm_attr_helper(fcpl_id);
/* Close the FCPL */
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
}
/*-------------------------------------------------------------------------
* Function: size2_verify_plist1
*
* Purpose: Verify that the property list passed in is in fact the
* same property list used as dcpl1_id in the size2 helper
* function. This ensures that the filters can be read.
*
* Programmer: James Laird
* Wednesday, November 22, 2006
*
*-------------------------------------------------------------------------
*/
static void size2_verify_plist1(hid_t plist)
{
size_t cd_nelmts;
unsigned int cd_value;
char name[NAME_BUF_SIZE];
H5Z_filter_t filter;
hid_t dtype1_id;
dtype1_struct fill1;
dtype1_struct fill1_correct;
herr_t ret;
/* Hardcoded to correspond to dcpl1_id created in size2_helper */
/* Check filters */
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 0, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_SHUFFLE, "H5Pget_filter2");
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 1, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_DEFLATE, "H5Pget_filter2");
VERIFY(cd_value, 1, "H5Pget_filter2");
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 2, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_SHUFFLE, "H5Pget_filter2");
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 3, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_FLETCHER32, "H5Pget_filter2");
/* Check fill value */
dtype1_id=make_dtype_1();
CHECK_I(dtype1_id, "make_dtype_1");
HDmemset(&fill1_correct, '1', sizeof(fill1_correct));
ret = H5Pget_fill_value(plist, dtype1_id, &fill1);
CHECK_I(ret, "H5Pget_fill_value");
ret = memcmp(&fill1, &fill1_correct, sizeof(fill1_correct));
VERIFY(ret, 0, memcmp);
}
/*-------------------------------------------------------------------------
* Function: size2_verify_plist2
*
* Purpose: Verify that the property list passed in is in fact the
* same property list used as dcpl2_id in the size2 helper
* function. This ensures that the filters can be read.
*
* Programmer: James Laird
* Wednesday, November 22, 2006
*
*-------------------------------------------------------------------------
*/
static void size2_verify_plist2(hid_t plist)
{
size_t cd_nelmts;
unsigned int cd_value;
char name[NAME_BUF_SIZE];
H5Z_filter_t filter;
hid_t dtype2_id;
char fill2[DTYPE2_SIZE];
char fill2_correct[DTYPE2_SIZE];
herr_t ret;
/* Hardcoded to correspond to dcpl1_id created in size2_helper */
/* Check filters */
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 0, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_DEFLATE, "H5Pget_filter2");
VERIFY(cd_value, 1, "H5Pget_filter2");
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 1, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_DEFLATE, "H5Pget_filter2");
VERIFY(cd_value, 2, "H5Pget_filter2");
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 2, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_DEFLATE, "H5Pget_filter2");
VERIFY(cd_value, 2, "H5Pget_filter2");
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 3, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_DEFLATE, "H5Pget_filter2");
VERIFY(cd_value, 1, "H5Pget_filter2");
cd_nelmts = 1;
filter = H5Pget_filter2(plist, 4, NULL, &cd_nelmts, &cd_value, (size_t)NAME_BUF_SIZE, name, NULL);
CHECK_I(filter, "H5Pget_filter2");
VERIFY(filter, H5Z_FILTER_DEFLATE, "H5Pget_filter2");
VERIFY(cd_value, 5, "H5Pget_filter2");
/* Check fill value */
dtype2_id = make_dtype_2();
CHECK_I(dtype2_id, "make_dtype_2");
HDmemset(&fill2_correct, '2', (size_t)DTYPE2_SIZE);
ret = H5Pget_fill_value(plist, dtype2_id, &fill2);
CHECK_I(ret, "H5Pget_fill_value");
ret = HDmemcmp(&fill2, &fill2_correct, (size_t)DTYPE2_SIZE);
VERIFY(ret, 0, memcmp);
}
#ifdef NOT_NOW
/*-------------------------------------------------------------------------
* Function: size2_dump_struct
*
* Purpose: A debugging function to print the contents of a
* size2_helper_struct (which holds the various sizes for a
* given file during the size2_helper function).
*
* Programmer: James Laird
* Friday, January 26, 2007
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
size2_dump_struct(const char *name, size2_helper_struct *sizes)
{
puts(name);
printf(" empty size: %llu\n", (unsigned long long)sizes->empty_size);
printf(" first dataset: %llu \tdelta: %llu\n", (unsigned long long)sizes->first_dset, (unsigned long long)(sizes->first_dset - sizes->empty_size));
printf("second dataset: %llu \tdelta: %llu\n", (unsigned long long)sizes->second_dset, (unsigned long long)(sizes->second_dset - sizes->first_dset));
printf(" dsets 1: %llu \tdelta: %llu\n", (unsigned long long)sizes->dsets1, (unsigned long long)(sizes->dsets1 - sizes->second_dset));
printf(" dsets 2: %llu \tdelta: %llu\n", (unsigned long long)sizes->dsets2, (unsigned long long)(sizes->dsets2 - sizes->dsets1));
printf(" interleaved: %llu \tdelta: %llu\n", (unsigned long long)sizes->interleaved, (unsigned long long)(sizes->interleaved - sizes->dsets2));
printf(" attributes: %llu \tdelta: %llu\n", (unsigned long long)sizes->attrs1, (unsigned long long)(sizes->attrs1 - sizes->interleaved));
printf(" attributes 2: %llu \tdelta: %llu\n", (unsigned long long)sizes->attrs2, (unsigned long long)(sizes->attrs2 - sizes->attrs1));
}
#endif /* NOT_NOW */
/*-------------------------------------------------------------------------
* Function: size2_helper
*
* Purpose: A helper functon for test_sohm_size2.
*
* Creates a file using the given fcpl, then creates lots
* of different kinds of messages within the file and
* returns the size of the file for comparison.
*
* If test_file_closing is not zero, closes and re-opens
* the file after every write.
*
* Doesn't close the property list. Prints an error message
* if there's a failure, but doesn't alter its return value.
*
* Programmer: James Laird
* Friday, November 17, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static int
size2_helper(hid_t fcpl_id, int test_file_closing, size2_helper_struct *ret_sizes)
{
hid_t file_id = -1;
hid_t dtype1_id = -1;
hid_t dtype2_id = -1;
hid_t dspace1_id = -1;
hid_t dspace2_id = -1;
hid_t dcpl1_id = -1;
hid_t dcpl2_id = -1;
hid_t dset_id = -1;
hid_t attr_type_id = -1;
hid_t attr_space_id = -1;
hid_t attr_id = -1;
hid_t group_id = -1;
char attr_string1[NAME_BUF_SIZE];
char attr_string2[NAME_BUF_SIZE];
char attr_name[NAME_BUF_SIZE];
int x;
herr_t ret;
/* Constants used in this function */
const int rank1 = SIZE2_RANK1;
const int rank2 = SIZE2_RANK2;
const hsize_t dims[SIZE2_RANK2] = SIZE2_DIMS;
dtype1_struct fill1;
char fill2[DTYPE2_SIZE];
/* Closing and re-opening the file takes a long time on systems without
* local disks. Don't close and reopen if express testing is enabled.
*/
if(GetTestExpress() > 1)
test_file_closing = 0;
/* Create a file and get its size */
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
/* Get the file size */
ret_sizes->empty_size = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Re-open the file and set up messages to write */
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
/* Create two large datatype messages */
dtype1_id = make_dtype_1();
CHECK_I(dtype1_id, "make_dtype_1");
dtype2_id = make_dtype_2();
CHECK_I(dtype2_id, "make_dtype_2");
/* Create some large dataspaces */
dspace1_id = H5Screate_simple(rank1, dims, dims);
CHECK_I(dspace1_id, "H5Screate_simple");
dspace2_id = H5Screate_simple(rank2, dims, dims);
CHECK_I(dspace2_id, "H5Screate_simple");
/* fill1 and fill2 are fill values for the two datatypes.
* We'll set them in the DCPL.
*/
HDmemset(&fill1, '1', sizeof(dtype1_struct));
HDmemset(&fill2, '2', (size_t)DTYPE2_SIZE);
dcpl1_id = H5Pcreate(H5P_DATASET_CREATE);
CHECK_I(dcpl1_id, "H5Pcreate");
H5Pset_fill_value(dcpl1_id, dtype1_id, &fill1);
dcpl2_id = H5Pcreate(H5P_DATASET_CREATE);
CHECK_I(dcpl2_id, "H5Pcreate");
H5Pset_fill_value(dcpl2_id, dtype2_id, &fill2);
/* Filter messages we'll create by setting them in a DCPL. These
* values don't need to make sense, they just need to take up space.
*/
ret = H5Pset_chunk(dcpl1_id, rank1, dims);
CHECK_I(ret, "H5Pset_chunk");
ret = H5Pset_shuffle(dcpl1_id);
CHECK_I(ret, "H5Pset_shuffle");
ret = H5Pset_deflate(dcpl1_id, 1);
CHECK_I(ret, "H5Pset_deflate");
ret = H5Pset_shuffle(dcpl1_id);
CHECK_I(ret, "H5Pset_shuffle");
ret = H5Pset_fletcher32(dcpl1_id);
CHECK_I(ret, "H5Pset_fletcher32");
/* Make sure that this property list is what it should be */
size2_verify_plist1(dcpl1_id);
/* Second dcpl */
ret = H5Pset_chunk(dcpl2_id, rank2, dims);
CHECK_I(ret, "H5Pset_chunk");
ret = H5Pset_deflate(dcpl2_id, 1);
CHECK_I(ret, "H5Pset_deflate");
ret = H5Pset_deflate(dcpl2_id, 2);
CHECK_I(ret, "H5Pset_deflate");
ret = H5Pset_deflate(dcpl2_id, 2);
CHECK_I(ret, "H5Pset_deflate");
ret = H5Pset_deflate(dcpl2_id, 1);
CHECK_I(ret, "H5Pset_deflate");
ret = H5Pset_deflate(dcpl2_id, 5);
CHECK_I(ret, "H5Pset_deflate");
/* Make sure that this property list is what it should be */
size2_verify_plist2(dcpl2_id);
/* Set up attribute data */
HDmemset(attr_string1, 0, (size_t)NAME_BUF_SIZE);
HDmemset(attr_string2, 0, (size_t)NAME_BUF_SIZE);
HDstrcpy(attr_string1, LONG_STRING);
HDstrcpy(attr_string2, LONG_STRING);
attr_string2[1] = '1'; /* The second string starts "01 index..." */
/* Set up attribute metadata */
attr_type_id = H5Tcopy(H5T_C_S1);
CHECK_I(attr_type_id, "H5Tcopy");
ret = H5Tset_size(attr_type_id, (size_t)NAME_BUF_SIZE);
CHECK_I(ret, "H5Tset_size");
attr_space_id = H5Screate_simple(1, dims, dims);
CHECK_I(attr_space_id, "H5Screate_simple");
/* Create datasets with a big datatype, dataspace, fill value,
* and filter pipeline.
*/
for(x = 0; x < NUM_DATASETS; ++x) {
dset_id = H5Dcreate2(file_id, DSETNAME[x], dtype1_id, dspace1_id, H5P_DEFAULT, dcpl1_id, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
attr_id = H5Acreate2(dset_id, "attr_name", attr_type_id, attr_space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, attr_type_id, attr_string1);
CHECK_I(ret, "H5Awrite");
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
/* Gather extra statistics on first two datasets in file */
if(x < 2) {
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
/* Get the file's size now */
if(x == 0)
ret_sizes->first_dset = h5_get_file_size(FILENAME, H5P_DEFAULT);
else
ret_sizes->second_dset = h5_get_file_size(FILENAME, H5P_DEFAULT);
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
} /* end if */
/* Close & reopen file if requested */
else if(test_file_closing) {
file_id = close_reopen_file(file_id, FILENAME, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
} /* end if */
} /* end for */
/* Close file and get its size now */
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
ret_sizes->dsets1 = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Now create a new group filled with datasets that use all different messages */
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gcreate2(file_id, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(group_id, "H5Gcreate2");
/* Create NUM_DATASETS datasets in the new group */
for(x=0; x<NUM_DATASETS; ++x)
{
dset_id = H5Dcreate2(group_id, DSETNAME[x], dtype2_id, dspace2_id, H5P_DEFAULT, dcpl2_id, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
attr_id = H5Acreate2(dset_id, "attr_name", attr_type_id, attr_space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, attr_type_id, attr_string2);
CHECK_I(ret, "H5Awrite");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
/* Close everything & reopen file if requested */
if(test_file_closing) {
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
file_id = close_reopen_file(file_id, FILENAME, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gopen2(file_id, "group", H5P_DEFAULT);
CHECK_I(group_id, "H5Gopen2");
}
}
/* Close file and get its size now */
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
ret_sizes->dsets2 = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Create a new group and interleave writes of datasets types 1 and 2. */
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gcreate2(file_id, "interleaved group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(group_id, "H5Gcreate2");
/* Create NUM_DATASETS datasets in the new group */
for(x=0; x<NUM_DATASETS; x+=2)
{
dset_id = H5Dcreate2(group_id, DSETNAME[x], dtype1_id, dspace1_id, H5P_DEFAULT, dcpl1_id, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
attr_id = H5Acreate2(dset_id, "attr_name", attr_type_id, attr_space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, attr_type_id, attr_string1);
CHECK_I(ret, "H5Awrite");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
dset_id = H5Dcreate2(group_id, DSETNAME[x+1], dtype2_id, dspace2_id, H5P_DEFAULT, dcpl2_id, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
attr_id = H5Acreate2(dset_id, "attr_name", attr_type_id, attr_space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, attr_type_id, attr_string2);
CHECK_I(ret, "H5Awrite");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
/* Close everything & reopen file if requested */
if(test_file_closing) {
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
file_id = close_reopen_file(file_id, FILENAME, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gopen2(file_id, "interleaved group", H5P_DEFAULT);
CHECK_I(group_id, "H5Gopen2");
}
}
/* Close file and get its size now */
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
ret_sizes->interleaved = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Create lots of new attribute messages on the group
* (using different strings for the attribute)
*/
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gopen2(file_id, "group", H5P_DEFAULT);
CHECK_I(group_id, "H5Gopen2");
HDstrcpy(attr_name, "00 index");
for(x = 0; x < NUM_ATTRIBUTES; ++x) {
/* Create a unique name and value for each attribute */
attr_string1[0] = attr_name[0] = (x / 10) + '0';
attr_string1[1] = attr_name[1] = (x % 10) + '0';
/* Create an attribute on the group */
attr_id = H5Acreate2(group_id, attr_name, attr_type_id, attr_space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, attr_type_id, attr_string1);
CHECK_I(ret, "H5Awrite");
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
/* Close everything & reopen file if requested */
if(test_file_closing) {
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
file_id = close_reopen_file(file_id, FILENAME, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gopen2(file_id, "group", H5P_DEFAULT);
CHECK_I(group_id, "H5Gopen2");
}
}
/* Close file and get its size now */
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
ret_sizes->attrs1 = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Create all of the attributes again on the other group */
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gopen2(file_id, "interleaved group", H5P_DEFAULT);
CHECK_I(group_id, "H5Gopen2");
for(x=0; x<NUM_ATTRIBUTES; ++x)
{
/* Create the same name and value for each attribute as before */
attr_string1[0] = attr_name[0] = (x / 10) + '0';
attr_string1[1] = attr_name[1] = (x % 10) + '0';
/* Create an attribute on the group */
attr_id = H5Acreate2(group_id, attr_name, attr_type_id, attr_space_id, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
ret = H5Awrite(attr_id, attr_type_id, attr_string1);
CHECK_I(ret, "H5Awrite");
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
/* Close everything & reopen file if requested */
if(test_file_closing) {
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
file_id = close_reopen_file(file_id, FILENAME, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
group_id = H5Gopen2(file_id, "interleaved group", H5P_DEFAULT);
CHECK_I(group_id, "H5Gopen2");
}
}
/* Close file and get its size now */
ret = H5Gclose(group_id);
CHECK_I(ret, "H5Gclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
ret_sizes->attrs2 = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Close everything */
ret = H5Sclose(attr_space_id);
CHECK_I(ret, "H5Sclose");
ret = H5Tclose(attr_type_id);
CHECK_I(ret, "H5Sclose");
ret = H5Tclose(dtype1_id);
CHECK_I(ret, "H5Tclose");
ret = H5Tclose(dtype2_id);
CHECK_I(ret, "H5Tclose");
ret = H5Sclose(dspace1_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(dspace2_id);
CHECK_I(ret, "H5Sclose");
ret = H5Pclose(dcpl1_id);
CHECK_I(ret, "H5Pclose");
ret = H5Pclose(dcpl2_id);
CHECK_I(ret, "H5Pclose");
return 0;
}
/*-------------------------------------------------------------------------
* Function: size2_verify
*
* Purpose: A helper functon to verify the file created by size2_helper.
*
* Runs various tests (not exhaustive) to ensure that the
* file FILENAME actually has the structure that size2_helper
* should have created.
*
* Programmer: James Laird
* Friday, November 17, 2006
*
*-------------------------------------------------------------------------
*/
static void size2_verify(void)
{
hid_t file_id = -1;
hid_t dset_id=-1;
hid_t plist_id=-1;
hid_t space_id=-1;
hid_t group1_id, group2_id;
hid_t attr1_id, attr2_id;
hid_t attr_type_id;
int x, y;
herr_t ret;
char attr_string[NAME_BUF_SIZE];
char attr_correct_string[NAME_BUF_SIZE];
char attr_name[NAME_BUF_SIZE];
int ndims;
hsize_t dims[SIZE2_RANK2];
hsize_t correct_dims[SIZE2_RANK2] = SIZE2_DIMS;
file_id = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
/* Verify property lists and dataspaces */
/* Get property lists from first batch of datasets */
for(x = 0; x < NUM_DATASETS; ++x) {
dset_id = H5Dopen2(file_id, DSETNAME[x], H5P_DEFAULT);
CHECK_I(dset_id, "H5Dopen2");
plist_id = H5Dget_create_plist(dset_id);
CHECK_I(plist_id, "H5Dget_create_plist");
size2_verify_plist1(plist_id);
ret = H5Pclose(plist_id);
CHECK_I(ret, "H5Pclose");
space_id = H5Dget_space(dset_id);
CHECK_I(space_id, "H5Dget_space");
ndims = H5Sget_simple_extent_dims(space_id, dims, NULL);
CHECK_I(ndims, "H5Sget_simple_extent_dims");
VERIFY(ndims, SIZE2_RANK1, "H5Sget_simple_extent_dims");
for(y = 0; y < ndims; ++y)
VERIFY(dims[y], correct_dims[y], "H5Sget_simple_extent_dims");
ret = H5Sclose(space_id);
CHECK_I(ret, "H5Sclose");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
}
/* Get property lists from second batch of datasets */
group1_id = H5Gopen2(file_id, "group", H5P_DEFAULT);
CHECK_I(group1_id, "H5Gopen2");
for(x = 0; x < NUM_DATASETS; ++x) {
dset_id = H5Dopen2(group1_id, DSETNAME[x], H5P_DEFAULT);
CHECK_I(dset_id, "H5Dopen2");
plist_id = H5Dget_create_plist(dset_id);
CHECK_I(plist_id, "H5Dget_create_plist");
size2_verify_plist2(plist_id);
ret = H5Pclose(plist_id);
CHECK_I(ret, "H5Pclose");
space_id = H5Dget_space(dset_id);
CHECK_I(space_id, "H5Dget_space");
ndims = H5Sget_simple_extent_dims(space_id, dims, NULL);
CHECK_I(ndims, "H5Sget_simple_extent_dims");
VERIFY(ndims, SIZE2_RANK2, "H5Sget_simple_extent_dims");
for(y = 0; y < ndims; ++y)
VERIFY(dims[y], correct_dims[y], "H5Sget_simple_extent_dims");
ret = H5Sclose(space_id);
CHECK_I(ret, "H5Sclose");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
} /* end for */
ret = H5Gclose(group1_id);
CHECK_I(ret, "H5Gclose");
/* Get property lists from interleaved group of datasets */
group1_id = H5Gopen2(file_id, "interleaved group", H5P_DEFAULT);
CHECK_I(group1_id, "H5Gopen2");
for(x = 0; x < NUM_DATASETS; x += 2) {
/* First "type 1" dataset */
dset_id = H5Dopen2(group1_id, DSETNAME[x], H5P_DEFAULT);
CHECK_I(dset_id, "H5Dopen2");
plist_id = H5Dget_create_plist(dset_id);
CHECK_I(plist_id, "H5Dget_create_plist");
size2_verify_plist1(plist_id);
ret = H5Pclose(plist_id);
CHECK_I(ret, "H5Pclose");
space_id = H5Dget_space(dset_id);
CHECK_I(space_id, "H5Dget_space");
ndims = H5Sget_simple_extent_dims(space_id, dims, NULL);
CHECK_I(ndims, "H5Sget_simple_extent_dims");
VERIFY(ndims, SIZE2_RANK1, "H5Sget_simple_extent_dims");
for(y = 0; y < ndims; ++y)
VERIFY(dims[y], correct_dims[y], "H5Sget_simple_extent_dims");
ret = H5Sclose(space_id);
CHECK_I(ret, "H5Sclose");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
/* Second "type 2" dataset */
dset_id = H5Dopen2(group1_id, DSETNAME[x + 1], H5P_DEFAULT);
CHECK_I(dset_id, "H5Dopen2");
plist_id = H5Dget_create_plist(dset_id);
CHECK_I(plist_id, "H5Dget_create_plist");
size2_verify_plist2(plist_id);
ret = H5Pclose(plist_id);
CHECK_I(ret, "H5Pclose");
space_id = H5Dget_space(dset_id);
CHECK_I(space_id, "H5Dget_space");
ndims = H5Sget_simple_extent_dims(space_id, dims, NULL);
CHECK_I(ndims, "H5Sget_simple_extent_dims");
VERIFY(ndims, SIZE2_RANK2, "H5Sget_simple_extent_dims");
for(y = 0; y < ndims; ++y)
VERIFY(dims[y], correct_dims[y], "H5Sget_simple_extent_dims");
ret = H5Sclose(space_id);
CHECK_I(ret, "H5Sclose");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
} /* end for */
ret = H5Gclose(group1_id);
CHECK_I(ret, "H5Gclose");
/* Verify attributes */
/* Create attribute data type */
attr_type_id = H5Tcopy(H5T_C_S1);
CHECK_I(attr_type_id, "H5Tcopy");
ret = H5Tset_size(attr_type_id, (size_t)NAME_BUF_SIZE);
CHECK_I(ret, "H5Tset_size");
/* Read attributes on both groups and verify that they are correct */
group1_id = H5Gopen2(file_id, "group", H5P_DEFAULT);
CHECK_I(group1_id, "H5Gopen2");
group2_id = H5Gopen2(file_id, "interleaved group", H5P_DEFAULT);
CHECK_I(group2_id, "H5Gopen2");
HDmemset(attr_string, 0, (size_t)NAME_BUF_SIZE);
HDmemset(attr_correct_string, 0, (size_t)NAME_BUF_SIZE);
HDstrcpy(attr_correct_string, LONG_STRING);
HDstrcpy(attr_name, "00 index");
for(x = 0; x < NUM_ATTRIBUTES; ++x) {
/* Create the name and correct value for each attribute */
attr_correct_string[0] = attr_name[0] = (x / 10) + '0';
attr_correct_string[1] = attr_name[1] = (x % 10) + '0';
attr1_id = H5Aopen(group1_id, attr_name, H5P_DEFAULT);
CHECK_I(attr1_id, "H5Aopen");
attr2_id = H5Aopen(group2_id, attr_name, H5P_DEFAULT);
CHECK_I(attr2_id, "H5Aopen");
ret = H5Aread(attr1_id, attr_type_id, attr_string);
CHECK_I(ret, "H5Aread");
VERIFY_STR(attr_string, attr_correct_string, "H5Aread");
ret = H5Aread(attr2_id, attr_type_id, attr_string);
CHECK_I(ret, "H5Aread");
VERIFY_STR(attr_string, attr_correct_string, "H5Aread");
ret = H5Aclose(attr1_id);
CHECK_I(attr1_id, "H5Aclose");
ret = H5Aclose(attr2_id);
CHECK_I(attr2_id, "H5Aclose");
}
/* Close everything */
ret = H5Tclose(attr_type_id);
CHECK_I(ret, "H5Tclose");
ret = H5Gclose(group1_id);
CHECK_I(ret, "H5Gclose");
ret = H5Gclose(group2_id);
CHECK_I(ret, "H5Gclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
}
/*-------------------------------------------------------------------------
* Function: test_sohm_size2
*
* Purpose: Tests shared object header messages using size2_helper to
* create different kinds of big messages.
*
* If close_reopen is set, closes and reopens the HDF5 file
* repeatedly while writing.
*
* This test works by first creating FCPLs with various
* parameters, then creating a standard file that includes
* every kind of message that can be shared using the helper
* function size2_helper. The test measures the size of the
* file at various points. Once all of the files have been
* generated, the test compares the measured sizes of the files.
*
*
* Programmer: James Laird
* Friday, November 17, 2006
*
*-------------------------------------------------------------------------
*/
static void test_sohm_size2(int close_reopen)
{
hid_t fcpl_id = -1;
/* Sizes for file with no shared messages at all */
size2_helper_struct norm_sizes;
/* Sizes for files with all messages in one index */
size2_helper_struct list_index_med, list_index_big;
size2_helper_struct btree_index, list_index_small;
/* Sizes for files with messages in three different indexes */
size2_helper_struct mult_index_med, mult_index_btree;
/* Sizes for files that don't share all kinds of messages */
size2_helper_struct share_some_med, share_some_btree;
/* Sizes for files that share different sizes of messages */
size2_helper_struct share_some_toobig_index, share_tiny_index, type_space_index;
herr_t ret;
if(close_reopen == 0)
MESSAGE(5, ("Testing that shared object header messages save space\n"))
else
MESSAGE(5, ("Testing that shared messages save space when file is closed and reopened\n"))
/* Create an fcpl with SOHMs disabled */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 0);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &norm_sizes);
size2_verify();
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
/* Create an fcpl with one big index */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 20);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Set the indexes to use a medium-sized list */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 30, 25);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &list_index_med);
size2_verify();
/* Try making the list really big */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 1000, 900);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &list_index_big);
size2_verify();
/* Use a B-tree instead of a list */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &btree_index);
size2_verify();
/* Use such a small list that it'll become a B-tree */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 10, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &list_index_small);
size2_verify();
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
/* Create a new property list that puts messages in different indexes. */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 3);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_DTYPE_FLAG, 20);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_FILL_FLAG | H5O_SHMESG_PLINE_FLAG, 20);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, 2, H5O_SHMESG_ATTR_FLAG, 20);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Use lists that are the same size as the "medium" list on the previous
* run.
*/
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 30, 25);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &mult_index_med);
size2_verify();
/* Use all B-trees */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &mult_index_btree);
size2_verify();
/* Edit the same property list (this should work) and don't share all messages.
*/
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_PLINE_FLAG, 20);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_FILL_FLAG, 100000);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, 2, H5O_SHMESG_ATTR_FLAG | H5O_SHMESG_SDSPACE_FLAG, 20);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Use "normal-sized" lists. */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 30, 25);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &share_some_med);
size2_verify();
/* Use btrees. */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &share_some_btree);
size2_verify();
/* Change the second index to hold only gigantic messages. Result should
* be the same as the previous file.
*/
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_FILL_FLAG, 100000);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &share_some_toobig_index);
size2_verify();
/* Share even tiny dataspace and datatype messages. This should result in
* attribute datatypes being shared. Make this one use "really big" lists.
* It turns out that attribute dataspaces are just big enough that it saves
* some space to share them, while sharing datatypes creates as much overhead
* as one gains from sharing them.
*/
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_SDSPACE_FLAG, 1);
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 1000, 900);
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &share_tiny_index);
size2_verify();
/* Create the same file but don't share the really tiny messages */
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_SDSPACE_FLAG, 100);
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 1000, 900);
/* Get the file size & verify its contents */
size2_helper(fcpl_id, close_reopen, &type_space_index);
size2_verify();
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
/* Check that all sizes make sense. There is lots of room for inexact
* results here since so many different factors contribute to file size.
*/
/* Check sizes of all files created using a single index first */
/* The empty size of each file with shared messages enabled should be the
* same and should be bigger than a normal file.
*/
if(norm_sizes.empty_size > list_index_med.empty_size)
VERIFY(norm_sizes.empty_size, 1, "h5_get_file_size");
if(list_index_med.empty_size != list_index_big.empty_size)
VERIFY(list_index_med.empty_size, list_index_big.empty_size, "h5_get_file_size");
if(list_index_med.empty_size != btree_index.empty_size)
VERIFY(list_index_med.empty_size, btree_index.empty_size, "h5_get_file_size");
if(list_index_med.empty_size != list_index_small.empty_size)
VERIFY(list_index_med.empty_size, list_index_small.empty_size, "h5_get_file_size");
/* The files with indexes shouldn't be that much bigger than an
* empty file.
*/
if(list_index_med.empty_size > norm_sizes.empty_size * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
/* Once one dataset has been created (with one of every kind of message),
* the normal file should still be smallest. The very small list
* btree_convert should be smaller than the B-tree since it has no
* extra overhead. The small list should also be smaller than the B-tree.
* The very large list should be much larger than anything else.
*/
if(norm_sizes.first_dset >= list_index_small.first_dset)
VERIFY(norm_sizes.first_dset, 1, "h5_get_file_size");
if(list_index_small.first_dset >= btree_index.first_dset)
VERIFY(list_index_small.first_dset, 1, "h5_get_file_size");
if(list_index_med.first_dset >= btree_index.first_dset)
VERIFY(btree_index.first_dset, 1, "h5_get_file_size");
if(btree_index.first_dset >= list_index_big.first_dset)
VERIFY(list_index_med.first_dset, 1, "h5_get_file_size");
/* Once a few copies of the same dataset have been created, the
* very small list shouldn't have become a B-tree yet, so it should
* be the smallest file. A larger list should be next, followed
* by a B-tree, followed by a normal file, followed by a
* list that is too large.
*/
if(list_index_small.dsets1 >= list_index_med.dsets1)
VERIFY(btree_index.dsets1, 1, "h5_get_file_size");
if(list_index_med.dsets1 >= btree_index.dsets1)
VERIFY(list_index_med.dsets1, 1, "h5_get_file_size");
if(btree_index.dsets1 >= norm_sizes.dsets1)
VERIFY(btree_index.dsets1, 1, "h5_get_file_size");
if(norm_sizes.dsets1 >= list_index_big.dsets1)
VERIFY(list_index_big.dsets1, 1, "h5_get_file_size");
/* The size gain should have been the same for each of the lists;
* their overhead is fixed. The B-tree should have gained at least
* as much, and the normal file more than that.
*/
if((list_index_small.dsets1 - list_index_small.first_dset) !=
(list_index_med.dsets1 - list_index_med.first_dset))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_med.dsets1 - list_index_med.first_dset) !=
(list_index_big.dsets1 - list_index_big.first_dset))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_big.dsets1 - list_index_big.first_dset) >
(btree_index.dsets1 - btree_index.first_dset))
VERIFY(0, 1, "h5_get_file_size");
if((btree_index.dsets1 - btree_index.first_dset) >=
(norm_sizes.dsets1 - norm_sizes.first_dset))
VERIFY(0, 1, "h5_get_file_size");
/* Once another kind of each message has been written, the very small list
* should convert into a B-tree. Now the list should be smallest, then
* the B-trees (although the converted B-tree file may be a little bigger),
* then the normal file. The largest list may or may not be bigger than
* the normal file.
*/
if(list_index_med.dsets2 >= btree_index.dsets2)
VERIFY(list_index_med.dsets2, 1, "h5_get_file_size");
if(btree_index.dsets2 > list_index_small.dsets2 * OVERHEAD_ALLOWED)
VERIFY(btree_index.dsets2, list_index_small.dsets2, "h5_get_file_size");
if(list_index_small.dsets2 >= norm_sizes.dsets2)
VERIFY(btree_index.dsets2, 1, "h5_get_file_size");
/* If the small list (now a B-tree) is bigger than the existing B-tree,
* it shouldn't be much bigger.
* It seems that the small lists tends to be pretty big anyway. Allow
* for it to have twice as much overhead.
*/
if(list_index_small.dsets2 > btree_index.dsets2 * OVERHEAD_ALLOWED * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
/* The lists should have grown the least since they share messages and
* have no extra overhead. The normal file should have grown more than
* either the lists or the B-tree. The B-tree may not have grown more
* than the lists, depending on whether it needed to split nodes or not.
*/
if((list_index_med.dsets2 - list_index_med.dsets1) !=
(list_index_big.dsets2 - list_index_big.dsets1))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_big.dsets2 - list_index_big.dsets1) >
(btree_index.dsets2 - btree_index.dsets1))
VERIFY(0, 1, "h5_get_file_size");
if((btree_index.dsets2 - btree_index.dsets1) >=
(norm_sizes.dsets2 - norm_sizes.dsets1))
VERIFY(0, 1, "h5_get_file_size");
/* Interleaving the writes should have no effect on how the messages are
* shared. No new messages should be written to the indexes, so the
* sohm files will only get a little bit bigger.
*/
if(list_index_med.interleaved >= btree_index.interleaved)
VERIFY(0, 1, "h5_get_file_size");
if(btree_index.interleaved > list_index_small.interleaved * OVERHEAD_ALLOWED)
VERIFY(btree_index.interleaved, list_index_small.interleaved, "h5_get_file_size");
if(list_index_small.interleaved >= norm_sizes.interleaved)
VERIFY(0, 1, "h5_get_file_size");
/* The lists should still have grown the same amount. The converted
* B-tree shouldn't have grown more than the index that was originally
* a B-tree (although it might have grown less if there was extra free
* space within the file).
*/
if((list_index_med.interleaved - list_index_med.dsets2) !=
(list_index_big.interleaved - list_index_big.dsets2))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_big.interleaved - list_index_big.dsets2) >
(btree_index.interleaved - btree_index.dsets2))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_small.interleaved - list_index_small.dsets2) >
(btree_index.interleaved - btree_index.dsets2))
VERIFY(0, 1, "h5_get_file_size");
if((btree_index.interleaved - btree_index.dsets2) >=
(norm_sizes.interleaved - norm_sizes.dsets2))
VERIFY(0, 1, "h5_get_file_size");
/* After many attributes have been written, both the small and medium lists
* should have become B-trees and be about the same size as the index
* that started as a B-tree.
* Add in OVERHEAD_ALLOWED as a fudge factor here, since the allocation
* of file space can be hard to predict.
*/
if(btree_index.attrs1 > list_index_small.attrs1 * OVERHEAD_ALLOWED)
VERIFY(btree_index.attrs1, list_index_small.attrs1, "h5_get_file_size");
if(btree_index.attrs1 > list_index_med.attrs1 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if(list_index_med.attrs1 > btree_index.attrs1 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if(list_index_small.attrs1 > btree_index.attrs1 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
/* Neither of the converted lists should be too much bigger than
* the index that was originally a B-tree.
*/
if(list_index_small.attrs1 > btree_index.attrs1 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if(list_index_med.attrs1 > btree_index.attrs1 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
/* The "normal" file should have had less overhead, so should gain less
* size than any of the other indexes since none of these attribute
* messages could be shared. The large list should have gained
* less overhead than the B-tree indexes.
*/
if((norm_sizes.attrs1 - norm_sizes.interleaved) >=
(list_index_big.attrs1 - list_index_big.interleaved))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_big.attrs1 - list_index_big.interleaved) >=
(list_index_small.attrs1 - list_index_small.interleaved))
VERIFY(0, 1, "h5_get_file_size");
/* Give it some overhead (for checkin to move messages into continuation message) */
if((list_index_small.attrs1 - list_index_small.interleaved) >
((btree_index.attrs1 - btree_index.interleaved) * OVERHEAD_ALLOWED))
VERIFY(0, 1, "h5_get_file_size");
/* Writing another copy of each attribute shouldn't change the ordering
* of sizes. The big list index is still too big to be smaller than a
* normal file. The B-tree indexes should all be about the same size.
*/
if(btree_index.attrs2 > list_index_small.attrs2 * OVERHEAD_ALLOWED)
VERIFY(btree_index.attrs2, list_index_small.attrs2, "h5_get_file_size");
if(list_index_small.attrs2 > btree_index.attrs2 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if(btree_index.attrs2 > list_index_med.attrs2 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if(list_index_med.attrs2 > btree_index.attrs2 * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if(list_index_med.attrs2 >= norm_sizes.attrs2)
VERIFY(0, 1, "h5_get_file_size");
if(list_index_big.attrs2 >= norm_sizes.attrs2)
VERIFY(0, 1, "h5_get_file_size");
/* All of the B-tree indexes should have gained about the same amount
* of space; at least as much as the list index and less than a normal
* file.
*/
if((list_index_small.attrs2 - list_index_small.attrs1) >
(btree_index.attrs2 - btree_index.attrs1))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_med.attrs2 - list_index_med.attrs1) >
(btree_index.attrs2 - btree_index.attrs1))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_big.attrs2 - list_index_big.attrs1) >
(list_index_med.attrs2 - list_index_med.attrs1))
VERIFY(0, 1, "h5_get_file_size");
if((btree_index.attrs2 - btree_index.attrs1) >=
(norm_sizes.attrs2 - norm_sizes.attrs1))
VERIFY(0, 1, "h5_get_file_size");
/* Done checking the first few files that use a single index. */
/* Start comparing other kinds of files with these "standard"
* one-index files
*/
/* Check files with multiple indexes. */
/* These files should be larger when first created than one-index
* files.
*/
if(mult_index_med.empty_size <= list_index_med.empty_size)
VERIFY(0, 1, "h5_get_file_size");
if(mult_index_btree.empty_size != mult_index_med.empty_size)
VERIFY(0, 1, "h5_get_file_size");
/* When the first dataset is written, they should grow quite a bit as
* many different indexes must be created.
*/
if((mult_index_med.first_dset - mult_index_med.empty_size) <=
(list_index_med.first_dset - list_index_med.empty_size))
VERIFY(0, 1, "h5_get_file_size");
if((mult_index_btree.first_dset - mult_index_btree.empty_size) <=
(btree_index.first_dset - btree_index.empty_size))
VERIFY(0, 1, "h5_get_file_size");
/* When the second dataset is written, they should grow less as
* some extra heap space is allocated, but no more indices.
*/
if((mult_index_med.second_dset - mult_index_med.first_dset) >
(mult_index_med.first_dset - mult_index_med.empty_size))
VERIFY(0, 1, "h5_get_file_size");
if((list_index_med.second_dset - list_index_med.first_dset) >
(list_index_med.first_dset - list_index_med.empty_size))
VERIFY(0, 1, "h5_get_file_size");
if((mult_index_btree.second_dset - mult_index_btree.first_dset) >
(mult_index_btree.first_dset - mult_index_btree.empty_size))
VERIFY(0, 1, "h5_get_file_size");
if((btree_index.second_dset - btree_index.first_dset) >
(btree_index.first_dset - btree_index.empty_size))
VERIFY(0, 1, "h5_get_file_size");
/* And the size delta for the second dataset is less in files with only
* one index.
*/
if((mult_index_med.second_dset - mult_index_med.first_dset) <=
(list_index_med.second_dset - list_index_med.first_dset))
VERIFY(0, 1, "h5_get_file_size");
if((mult_index_btree.first_dset - mult_index_btree.empty_size) <=
(btree_index.first_dset - btree_index.empty_size))
VERIFY(0, 1, "h5_get_file_size");
/* Once that initial overhead is out of the way and the lists/btrees
* have been created, files with more than one index should grow at
* the same rate or slightly faster than files with just one index
* and one heap.
*/
if((mult_index_med.dsets1 - mult_index_med.second_dset) !=
(list_index_med.dsets1 - list_index_med.second_dset))
VERIFY((mult_index_med.dsets1 - mult_index_med.second_dset), (list_index_med.dsets1 - list_index_med.second_dset), "h5_get_file_size");
if((mult_index_btree.dsets1 - mult_index_btree.second_dset) !=
(btree_index.dsets1 - btree_index.second_dset))
VERIFY((mult_index_btree.dsets1 - mult_index_btree.second_dset), (btree_index.dsets1 - btree_index.second_dset), "h5_get_file_size");
if((mult_index_med.dsets2 - mult_index_med.dsets1) >
(list_index_med.dsets2 - list_index_med.dsets1) * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if((mult_index_btree.dsets2 - mult_index_btree.dsets1) >
(btree_index.dsets2 - btree_index.dsets1) * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if((mult_index_med.interleaved - mult_index_med.dsets2) >
(list_index_med.interleaved - list_index_med.dsets2) * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
if((mult_index_btree.interleaved - mult_index_btree.dsets2) >
(btree_index.interleaved - btree_index.dsets2) * OVERHEAD_ALLOWED)
VERIFY(0, 1, "h5_get_file_size");
/* When all the attributes are added, only the index holding attributes
* will become a B-tree. Skip the interleaved to attrs1 interval when
* this happens because it's hard to predict exactly how much space this
* will take.
*/
if((mult_index_med.attrs2 - mult_index_med.attrs1) !=
(list_index_med.attrs2 - list_index_med.attrs1))
VERIFY(0, 1, "h5_get_file_size");
if((mult_index_btree.attrs2 - mult_index_btree.attrs1) !=
(btree_index.attrs2 - btree_index.attrs1))
VERIFY(0, 1, "h5_get_file_size");
/* The final file size for both of the multiple index files should be
* smaller than a normal file but bigger than any of the one-index files.
*/
if(mult_index_med.attrs2 >= norm_sizes.attrs2)
VERIFY(0, 1, "h5_get_file_size");
if(mult_index_btree.attrs2 >= norm_sizes.attrs2)
VERIFY(0, 1, "h5_get_file_size");
if(mult_index_med.attrs2 * OVERHEAD_ALLOWED < btree_index.attrs2)
VERIFY(0, 1, "h5_get_file_size");
if(mult_index_btree.attrs2 * OVERHEAD_ALLOWED < btree_index.attrs2)
VERIFY(0, 1, "h5_get_file_size");
/* Check files that don't share all messages. */
/* These files have three indexes like the files above, so they should be
* the same size when created.
*/
if(share_some_med.empty_size != mult_index_med.empty_size)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_med.empty_size != share_some_btree.empty_size)
VERIFY(0, 1, "h5_get_file_size");
/* When the first dataset is created, they should be not quite as big
* as equivalent files that share all messages (since shared messages
* have a little bit of overhead).
*/
if(share_some_med.first_dset >= mult_index_med.first_dset)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_btree.first_dset >= mult_index_btree.first_dset)
VERIFY(0, 1, "h5_get_file_size");
/* The files that share some should have a growth rate in between
* files that share all messages and normal files
*/
if((share_some_med.interleaved - share_some_med.first_dset) <=
(mult_index_med.interleaved - mult_index_med.first_dset))
VERIFY(0, 1, "h5_get_file_size");
if((share_some_med.interleaved - share_some_med.first_dset) >=
(norm_sizes.interleaved - norm_sizes.first_dset))
VERIFY(0, 1, "h5_get_file_size");
if((share_some_btree.interleaved - share_some_btree.first_dset) <=
(mult_index_btree.interleaved - mult_index_btree.first_dset))
VERIFY(0, 1, "h5_get_file_size");
if((share_some_btree.interleaved - share_some_btree.first_dset) >=
(norm_sizes.interleaved - norm_sizes.first_dset))
VERIFY(0, 1, "h5_get_file_size");
/* Check the file that only stored gigantic messages in its second
* index. Since no messages were that big, it should be identical
* to the file with an empty index.
*/
if(share_some_btree.empty_size != share_some_toobig_index.empty_size)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_btree.first_dset != share_some_toobig_index.first_dset)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_btree.dsets1 != share_some_toobig_index.dsets1)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_btree.dsets2 != share_some_toobig_index.dsets2)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_btree.interleaved != share_some_toobig_index.interleaved)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_btree.attrs1 != share_some_toobig_index.attrs1)
VERIFY(0, 1, "h5_get_file_size");
if(share_some_btree.attrs2 != share_some_toobig_index.attrs2)
VERIFY(0, 1, "h5_get_file_size");
/* Check the file that shares even very tiny messages. Once messages
* are written to it, it should gain a little space from sharing the
* messages and lose a little space to overhead so that it's just slightly
* smaller than a file that doesn't share tiny messages.
* If the overhead increases or the size of messages decreases, these
* numbers may be off.
*/
if(share_tiny_index.empty_size != type_space_index.empty_size)
VERIFY(share_tiny_index.empty_size, type_space_index.empty_size, "h5_get_file_size");
if(share_tiny_index.first_dset >= type_space_index.first_dset * OVERHEAD_ALLOWED)
VERIFY(share_tiny_index.first_dset, type_space_index.first_dset, "h5_get_file_size");
if(share_tiny_index.first_dset < type_space_index.first_dset)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.second_dset >= type_space_index.second_dset)
VERIFY(share_tiny_index.second_dset, type_space_index.second_dset, "h5_get_file_size");
if(share_tiny_index.second_dset * OVERHEAD_ALLOWED < type_space_index.second_dset)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.dsets1 >= type_space_index.dsets1)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.dsets1 * OVERHEAD_ALLOWED < type_space_index.dsets1)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.dsets2 >= type_space_index.dsets2)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.dsets2 * OVERHEAD_ALLOWED < type_space_index.dsets2)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.interleaved >= type_space_index.interleaved)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.interleaved * OVERHEAD_ALLOWED < type_space_index.interleaved)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.attrs1 >= type_space_index.attrs1)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.attrs1 * OVERHEAD_ALLOWED < type_space_index.attrs1)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.attrs2 >= type_space_index.attrs2)
VERIFY(0, 1, "h5_get_file_size");
if(share_tiny_index.attrs2 * OVERHEAD_ALLOWED < type_space_index.attrs2)
VERIFY(0, 1, "h5_get_file_size");
} /* end test_sohm_size2() */
/*-------------------------------------------------------------------------
* Function: delete_helper_write
*
* Purpose: Creates a dataset and attribute in file FILE_ID using value X
* in the DSPACE_ID and DCPL_ID arrays.
*
* Programmer: James Laird
* Tuesday, December 19, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void delete_helper_write(hid_t file_id, hid_t *dspace_id, hid_t *dcpl_id, int x)
{
hid_t dset_id = -1;
hid_t attr_id = -1;
char wdata;
herr_t ret;
/* Create dataset */
dset_id = H5Dcreate2(file_id, DSETNAME[x], H5T_NATIVE_CHAR, dspace_id[x], H5P_DEFAULT, dcpl_id[x], H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
/* Write data to dataset */
wdata = x + 'a';
ret = H5Dwrite(dset_id, H5T_NATIVE_CHAR, dspace_id[x], dspace_id[x], H5P_DEFAULT, &wdata);
CHECK_I(ret, "H5Dwrite");
/* Create an attribute on the dataset. */
attr_id = H5Acreate2(dset_id, "attr_name", H5T_NATIVE_CHAR, dspace_id[x], H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(attr_id, "H5Acreate2");
/* Write to attribute */
ret = H5Awrite(attr_id, H5T_NATIVE_CHAR, &wdata);
CHECK_I(ret, "H5Awrite");
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
}
/*-------------------------------------------------------------------------
* Function: delete_helper_read
*
* Purpose: Checks the value of the dataset and attribute created by
* delete_helper_write.
*
* Programmer: James Laird
* Tuesday, December 19, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void delete_helper_read(hid_t file_id, hid_t *dspace_id, int x)
{
hid_t dset_id = -1;
hid_t attr_id = -1;
char rdata;
herr_t ret;
/* Open dataset */
dset_id = H5Dopen2(file_id, DSETNAME[x], H5P_DEFAULT);
CHECK_I(dset_id, "H5Dopen2");
/* Read */
rdata = '\0';
ret = H5Dread(dset_id, H5T_NATIVE_CHAR, dspace_id[x], dspace_id[x], H5P_DEFAULT, &rdata);
CHECK_I(ret, "H5Dread");
VERIFY(rdata, (x + 'a'), "H5Dread");
/* Open attribute */
attr_id = H5Aopen(dset_id, "attr_name", H5P_DEFAULT);
CHECK_I(attr_id, "H5Aopen");
/* Read */
rdata = '\0';
ret = H5Aread(attr_id, H5T_NATIVE_CHAR, &rdata);
CHECK_I(ret, "H5Dread");
VERIFY(rdata, (x + 'a'), "H5Dread");
/* Cleanup */
ret = H5Aclose(attr_id);
CHECK_I(ret, "H5Aclose");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
}
/*-------------------------------------------------------------------------
* Function: delete_helper
*
* Purpose: Creates some shared messages, deletes them, and creates some
* more messages. The second batch of messages should use the
* space freed by the first batch, so should be about the same
* size as a file that never had the first batch of messages
* created.
*
* FCPL_ID is the file creation property list to use.
* DSPACE_ID and DCPL_ID are arrays of different dataspaces
* and property lists with filter pipelines used to create the
* messages.
*
* Programmer: James Laird
* Tuesday, December 19, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void delete_helper(hid_t fcpl_id, hid_t *dspace_id, hid_t *dcpl_id)
{
hid_t file_id=-1;
int x;
h5_stat_size_t norm_filesize;
h5_stat_size_t deleted_filesize;
herr_t ret;
/* Get the size of a "normal" file with no deleted messages */
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
/* Create batch of messages in the file starting at message 2 */
for(x=HALF_DELETE_NUM_MESGS; x<DELETE_NUM_MESGS; ++x) {
delete_helper_write(file_id, dspace_id, dcpl_id, x);
}
/* Check that messages can be read */
for(x=HALF_DELETE_NUM_MESGS; x<DELETE_NUM_MESGS; ++x) {
delete_helper_read(file_id, dspace_id, x);
}
/* Close file and get filesize */
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
norm_filesize = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Create a new file with messages 0 to (HALF_DELETE_NUM_MESGS - 1) */
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
for(x=0; x<HALF_DELETE_NUM_MESGS; ++x) {
delete_helper_write(file_id, dspace_id, dcpl_id, x);
}
/* Verify each dataset, then delete it (which should delete
* its shared messages as well
*/
for(x=0; x<HALF_DELETE_NUM_MESGS; ++x) {
delete_helper_read(file_id, dspace_id, x);
ret = H5Ldelete(file_id, DSETNAME[x], H5P_DEFAULT);
CHECK_I(ret, "H5Ldelete");
}
/* The file is now empty. Write and verify the second batch of messages
* again.
*/
for(x=HALF_DELETE_NUM_MESGS; x<DELETE_NUM_MESGS; ++x) {
delete_helper_write(file_id, dspace_id, dcpl_id, x);
}
for(x=HALF_DELETE_NUM_MESGS; x<DELETE_NUM_MESGS; ++x) {
delete_helper_read(file_id, dspace_id, x);
}
/* Close file and get filesize */
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
deleted_filesize = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* The two filesizes should be almost the same */
if(norm_filesize > deleted_filesize * OVERHEAD_ALLOWED)
VERIFY(norm_filesize, deleted_filesize, "h5_get_file_size");
if(deleted_filesize > norm_filesize * OVERHEAD_ALLOWED)
VERIFY(deleted_filesize, norm_filesize, "h5_get_file_size");
}
/*-------------------------------------------------------------------------
* Function: test_sohm_delete
*
* Purpose: Tests shared object header message deletion.
*
* Creates lots of shared messages, then ensures that they
* can be deleted without corrupting the remaining messages.
* Also checks that indexes convert from B-trees back into
* lists.
*
* Programmer: James Laird
* Tuesday, December 19, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
test_sohm_delete(void)
{
hid_t fcpl_id;
/* We'll use dataspaces and filter pipelines for this test.
* Create a number of distinct messages of each type.
*/
hid_t dspace_id[DELETE_NUM_MESGS] = {0};
hid_t dcpl_id[DELETE_NUM_MESGS] = {0};
unsigned u;
int x;
hsize_t dims[] = DELETE_DIMS;
herr_t ret;
/* Create a number of different dataspaces.
* For simplicity, each dataspace has only one element.
*/
for(u = 0; u < DELETE_NUM_MESGS; ++u) {
dspace_id[u] = H5Screate_simple((int)(u + 1), dims, dims);
CHECK_I(dspace_id[u], "H5Screate_simple");
} /* end for */
/* Create a number of different filter pipelines. */
dcpl_id[0] = H5Pcreate(H5P_DATASET_CREATE);
CHECK_I(dcpl_id[0], "H5Pcreate");
ret = H5Pset_chunk(dcpl_id[0], 1, dims);
CHECK_I(ret, "H5Pset_chunk");
ret = H5Pset_shuffle(dcpl_id[0]);
CHECK_I(ret, "H5Pset_shuffle");
for(u = 1; u < DELETE_NUM_MESGS; u += 2) {
dcpl_id[u] = H5Pcopy(dcpl_id[u - 1]);
CHECK_I(dcpl_id[u], "H5Pcopy");
ret = H5Pset_chunk(dcpl_id[u], (int)(u + 1), dims);
CHECK_I(ret, "H5Pset_chunk");
ret = H5Pset_deflate(dcpl_id[u], 1);
CHECK_I(ret, "H5Pset_deflate");
dcpl_id[u + 1] = H5Pcopy(dcpl_id[u]);
CHECK_I(dcpl_id[u + 1], "H5Pcopy");
ret = H5Pset_chunk(dcpl_id[u + 1], (int)(u + 2), dims);
CHECK_I(ret, "H5Pset_chunk");
ret = H5Pset_shuffle(dcpl_id[u + 1]);
CHECK_I(ret, "H5Pset_shuffle");
} /* end for */
/* Create an fcpl where all messages are shared in the same index */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 16);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Use big list indexes */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 4 * DELETE_NUM_MESGS, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Test that messages can be created and deleted properly */
delete_helper(fcpl_id, dspace_id, dcpl_id);
/* Use B-tree indexes */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
delete_helper(fcpl_id, dspace_id, dcpl_id);
/* Use small list indexes that will convert from lists to B-trees and back */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, HALF_DELETE_NUM_MESGS, HALF_DELETE_NUM_MESGS - 1);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
delete_helper(fcpl_id, dspace_id, dcpl_id);
/* Use two indexes */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_ATTR_FLAG, 16);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_DTYPE_FLAG, 16);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Use big list indexes */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 5000, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Use B-tree indexes */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
delete_helper(fcpl_id, dspace_id, dcpl_id);
/* Set phase change values so that one index converts to a B-tree and one doesn't */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, HALF_DELETE_NUM_MESGS + 1, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
delete_helper(fcpl_id, dspace_id, dcpl_id);
/* Test with varying message sizes (ideally, so some messages are too
* small to be written but some are big enough that they are still written
*/
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
for(u = DELETE_MIN_MESG_SIZE; u <= DELETE_MAX_MESG_SIZE; u += 10) {
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, u);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
delete_helper(fcpl_id, dspace_id, dcpl_id);
} /* end for */
/* Cleanup */
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
for(x = DELETE_NUM_MESGS - 1; x >= 0; --x) {
ret = H5Sclose(dspace_id[x]);
CHECK_I(ret, "H5Sclose");
ret = H5Pclose(dcpl_id[x]);
CHECK_I(ret, "H5Pclose");
} /* end for */
} /* end test_sohm_delete() */
/*-------------------------------------------------------------------------
* Function: test_sohm_delete_revert_helper
*
* Purpose: Tests that shared object header message deletion returns
* the file to its previous state using the supplied FCPL.
*
* Creates shared messages and then deletes them. Ensures
* that the file has not grown in size.
*
* Programmer: James Laird
* Wednesday, January 3, 2007
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static int
test_sohm_delete_revert_helper(hid_t fcpl_id)
{
hid_t file_id;
hid_t dspace_id;
hid_t dset_id;
hsize_t dims[1] = {1};
h5_stat_size_t initial_filesize, deleted_filesize;
int old_nerrs; /* Number of errors when entering this routine */
herr_t ret;
/* Retrieve the current # of reported errors */
old_nerrs = GetTestNumErrs();
/* Create a dataspace for later */
dspace_id = H5Screate_simple(1, dims, dims);
CHECK_I(dspace_id, "H5Screate_simple");
/* Create a file using the FCPL supplied*/
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
/* Close the file and get its size */
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
initial_filesize = h5_get_file_size(FILENAME, H5P_DEFAULT);
/* Re-create the file and create a dataset in it */
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
dset_id = H5Dcreate2(file_id, "dset", H5T_NATIVE_SHORT, dspace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
/* Close the dataset and delete it */
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
ret = H5Ldelete(file_id, "dset", H5P_DEFAULT);
CHECK_I(ret, "H5Ldelete");
/* Close the file and get its size */
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
deleted_filesize = h5_get_file_size(FILENAME, H5P_DEFAULT);
VERIFY(deleted_filesize, initial_filesize, "h5_get_file_size");
/* Repeat, creating two datasets in the file */
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
/* Create and close the first dataset */
dset_id = H5Dcreate2(file_id, "dset", H5T_NATIVE_SHORT, dspace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
/* Create and close the second. These messages should be shared */
dset_id = H5Dcreate2(file_id, "dset2", H5T_NATIVE_SHORT, dspace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
/* Delete both datasets */
ret = H5Ldelete(file_id, "dset", H5P_DEFAULT);
CHECK_I(ret, "H5Ldelete");
ret = H5Ldelete(file_id, "dset2", H5P_DEFAULT);
CHECK_I(ret, "H5Ldelete");
/* Close the file and get its size */
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
deleted_filesize = h5_get_file_size(FILENAME, H5P_DEFAULT);
VERIFY(deleted_filesize, initial_filesize, "h5_get_file_size");
/* Cleanup */
ret = H5Sclose(dspace_id);
CHECK_I(ret, "H5Sclose");
/* Retrieve current # of errors */
if(old_nerrs == GetTestNumErrs())
return(0);
else
return(-1);
} /* test_sohm_delete_revert_helper() */
/*-------------------------------------------------------------------------
* Function: test_sohm_delete_revert
*
* Purpose: Calls test_sohm_delete_revert_helper with different FCPLs.
*
* Programmer: James Laird
* Wednesday, January 3, 2007
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
test_sohm_delete_revert(void)
{
hid_t fcpl_id;
herr_t ret;
/* Create an fcpl with messages in two indexes */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 2);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_DTYPE_FLAG, 10);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_SDSPACE_FLAG, 10);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Call the helper function to test this FCPL. */
ret = test_sohm_delete_revert_helper(fcpl_id);
CHECK_I(ret, "test_sohm_delete_revert_helper");
/* Try using B-trees */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_delete_revert_helper(fcpl_id);
CHECK_I(ret, "test_sohm_delete_revert_helper");
/* Try sharing all messages */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 10);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 10, 5);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_delete_revert_helper(fcpl_id);
CHECK_I(ret, "test_sohm_delete_revert_helper");
/* Try using B-trees */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_delete_revert_helper(fcpl_id);
CHECK_I(ret, "test_sohm_delete_revert_helper");
/* There should be at least two messages in the test (datatype and
* dataspace). Use an index that will transition from a list to
* a B-tree and back.
*/
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 1, 2);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_delete_revert_helper(fcpl_id);
CHECK_I(ret, "test_sohm_delete_revert_helper");
/* Try with shared messages enabled, but when messages are too big
* to be shared.
*/
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 35);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_delete_revert_helper(fcpl_id);
CHECK_I(ret, "test_sohm_delete_revert_helper");
ret = H5Pclose(fcpl_id);
CHECK_I(ret, "H5Pclose");
}
/*-------------------------------------------------------------------------
* Function: test_sohm_extlink_helper
*
* Purpose: Tests that a dataset created through an external link can
* be opened (that shared messages were created or not and
* were shared in the right file).
*
* Programmer: James Laird
* Friday, December 22, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void test_sohm_extlink_helper(hid_t src_fcpl_id, hid_t dst_fcpl_id)
{
hid_t src_file_id = -1;
hid_t dst_file_id = -1;
hid_t space_id = -1;
hid_t dset_id = -1;
hsize_t dims[] = {1, 1};
herr_t ret;
/* Create files */
src_file_id = H5Fcreate(FILENAME_SRC, H5F_ACC_TRUNC, src_fcpl_id, H5P_DEFAULT);
CHECK_I(src_file_id, "H5Fcreate");
dst_file_id = H5Fcreate(FILENAME_DST, H5F_ACC_TRUNC, dst_fcpl_id, H5P_DEFAULT);
CHECK_I(dst_file_id, "H5Fcreate");
/* Create an external link from the source file to the destination file */
ret = H5Lcreate_external(FILENAME_DST, "/", src_file_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(ret, "H5Lcreate_external");
/* Create a dataset through the external link */
space_id = H5Screate_simple(2, dims, dims);
CHECK_I(space_id, "H5Screate_simple");
dset_id = H5Dcreate2(src_file_id, "ext_link/dataset", H5T_NATIVE_FLOAT, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK_I(dset_id, "H5Dcreate2");
/* Close the dataset and both files to make sure everything gets flushed
* out of memory
*/
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(src_file_id);
CHECK_I(ret, "H5Fclose");
ret = H5Fclose(dst_file_id);
CHECK_I(ret, "H5Fclose");
/* Ensure that the dataset can be opened. If the messages were written in
* the wrong file, it'll be impossible to read the dataset's object
* header.
*/
dst_file_id = H5Fopen(FILENAME_DST, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK_I(dst_file_id, "H5Fopen");
dset_id = H5Dopen2(dst_file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset_id, "H5Dopen2");
/* Cleanup */
ret = H5Dclose(dset_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(dst_file_id);
CHECK_I(ret, "H5Fclose");
}
/*-------------------------------------------------------------------------
* Function: test_sohm_extlink
*
* Purpose: Test creating SOHMs through external links (to make sure that
* they're created in the correct file).
*
* Programmer: James Laird
* Friday, December 22, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
test_sohm_extlink(void)
{
hid_t fcpl_id = -1;
herr_t ret;
/* Create fcpl */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 16);
CHECK_I(ret, "H5Pset_shared_mesg_index");
/* Test using external links when the source or destination file uses
* shared messages
*/
test_sohm_extlink_helper(fcpl_id, H5P_DEFAULT);
test_sohm_extlink_helper(H5P_DEFAULT, fcpl_id);
test_sohm_extlink_helper(fcpl_id, fcpl_id);
}
/*-------------------------------------------------------------------------
* Function: test_sohm_extend_dset_helper
*
* Purpose: Tests extending a dataset's dataspace when sharing is
* enabled.
*
* If close_reopen is TRUE, closes and reopens the file to
* ensure that data is correctly written to disk.
*
* Programmer: James Laird
* Wednesday, January 10, 2007
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static int
test_sohm_extend_dset_helper(hid_t fcpl_id, hbool_t close_reopen)
{
hid_t file_id = -1;
hid_t orig_space_id = -1;
hid_t space1_id, space2_id, space3_id;
hid_t dcpl_id = -1;
hid_t dset1_id, dset2_id, dset3_id;
hsize_t dims1[] = {1, 2};
hsize_t max_dims[] = {H5S_UNLIMITED, 2};
hsize_t dims2[] = {5, 2};
hsize_t out_dims[2];
hsize_t out_maxdims[2];
int x;
int old_nerrs; /* Number of errors when entering this routine */
herr_t ret;
/* Retrieve the current # of reported errors */
old_nerrs = GetTestNumErrs();
/* Create file */
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
/* Create property list with chunking */
dcpl_id = H5Pcreate(H5P_DATASET_CREATE);
CHECK_I(dcpl_id, "H5Pcreate");
ret = H5Pset_chunk(dcpl_id, 2, dims1);
CHECK_I(ret, "H5Pset_chunk");
/* Create a dataspace and a dataset*/
orig_space_id = H5Screate_simple(EXTEND_NDIMS, dims1, max_dims);
CHECK_I(orig_space_id, "H5Screate_simple");
dset1_id = H5Dcreate2(file_id, "dataset", H5T_NATIVE_LONG, orig_space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dcreate2");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
}
/* Create another dataset starting with the same dataspace */
dset2_id = H5Dcreate2(file_id, "dataset2", H5T_NATIVE_LONG, orig_space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dcreate2");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
}
/* Create a third dataset with the same dataspace */
dset3_id = H5Dcreate2(file_id, "dataset3", H5T_NATIVE_LONG, orig_space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dcreate2");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
dset3_id = H5Dopen2(file_id, "dataset3", H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dopen2");
}
/* Extend the first dataset */
ret = H5Dset_extent(dset1_id, dims2);
CHECK_I(ret, "H5Dset_extent");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
dset3_id = H5Dopen2(file_id, "dataset3", H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dopen2");
}
/* Get the dataspaces from the datasets */
space1_id = H5Dget_space(dset1_id);
CHECK_I(space1_id, "H5Dget_space");
space2_id = H5Dget_space(dset2_id);
CHECK_I(space2_id, "H5Dget_space");
space3_id = H5Dget_space(dset3_id);
CHECK_I(space3_id, "H5Dget_space");
/* Verify the dataspaces */
ret = H5Sget_simple_extent_dims(space1_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space2_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims1[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space3_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims1[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
/* Close all three dataspaces */
ret = H5Sclose(space1_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space2_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space3_id);
CHECK_I(ret, "H5Sclose");
/* Extend the second dataset */
ret = H5Dset_extent(dset2_id, dims2);
CHECK_I(ret, "H5Dset_extent");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
dset3_id = H5Dopen2(file_id, "dataset3", H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dopen2");
}
/* Get the dataspaces from the datasets */
space1_id = H5Dget_space(dset1_id);
CHECK_I(space1_id, "H5Dget_space");
space2_id = H5Dget_space(dset2_id);
CHECK_I(space2_id, "H5Dget_space");
space3_id = H5Dget_space(dset3_id);
CHECK_I(space3_id, "H5Dget_space");
/* Verify the dataspaces */
ret = H5Sget_simple_extent_dims(space1_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space2_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space3_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims1[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
/* Close all three dataspaces */
ret = H5Sclose(space1_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space2_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space3_id);
CHECK_I(ret, "H5Sclose");
/* Extend the third dataset */
ret = H5Dset_extent(dset3_id, dims2);
CHECK_I(ret, "H5Dset_extent");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
dset3_id = H5Dopen2(file_id, "dataset3", H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dopen2");
}
/* Get the dataspaces from the datasets */
space1_id = H5Dget_space(dset1_id);
CHECK_I(space1_id, "H5Dget_space");
space2_id = H5Dget_space(dset2_id);
CHECK_I(space2_id, "H5Dget_space");
space3_id = H5Dget_space(dset3_id);
CHECK_I(space3_id, "H5Dget_space");
/* Verify the dataspaces */
ret = H5Sget_simple_extent_dims(space1_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space2_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space3_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
/* Close all three dataspaces */
ret = H5Sclose(space1_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space2_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space3_id);
CHECK_I(ret, "H5Sclose");
/* Close the datasets and file */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
/* Change the order in which datasets are extended to ensure that there
* are no problems if a dataspace goes from being shared to not being
* shared or vice versa.
*/
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
CHECK_I(file_id, "H5Fcreate");
dset1_id = H5Dcreate2(file_id, "dataset", H5T_NATIVE_LONG, orig_space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dcreate2");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
}
/* Extend the first dataset */
ret = H5Dset_extent(dset1_id, dims2);
CHECK_I(ret, "H5Dset_extent");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
}
/* Create the second dataset. Its dataspace will be unshared and then
* become shared when extended.
*/
dset2_id = H5Dcreate2(file_id, "dataset2", H5T_NATIVE_LONG, orig_space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dcreate2");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
}
/* Extend the second dataset */
ret = H5Dset_extent(dset2_id, dims2);
CHECK_I(ret, "H5Dset_extent");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
}
/* Create the third dataset. Its dataspace will be unshared and then
* become shared when extended.
*/
dset3_id = H5Dcreate2(file_id, "dataset3", H5T_NATIVE_LONG, orig_space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dcreate2");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
dset3_id = H5Dopen2(file_id, "dataset3", H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dopen2");
}
/* Extend the third dataset */
ret = H5Dset_extent(dset3_id, dims2);
CHECK_I(ret, "H5Dset_extent");
if(close_reopen) {
/* If requested, close all open IDs and reopen them */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK_I(file_id, "H5Fopen");
dset1_id = H5Dopen2(file_id, "dataset", H5P_DEFAULT);
CHECK_I(dset1_id, "H5Dopen2");
dset2_id = H5Dopen2(file_id, "dataset2", H5P_DEFAULT);
CHECK_I(dset2_id, "H5Dopen2");
dset3_id = H5Dopen2(file_id, "dataset3", H5P_DEFAULT);
CHECK_I(dset3_id, "H5Dopen2");
}
/* Get the dataspaces from the datasets */
space1_id = H5Dget_space(dset1_id);
CHECK_I(space1_id, "H5Dget_space");
space2_id = H5Dget_space(dset2_id);
CHECK_I(space2_id, "H5Dget_space");
space3_id = H5Dget_space(dset3_id);
CHECK_I(space3_id, "H5Dget_space");
/* Verify the dataspaces */
ret = H5Sget_simple_extent_dims(space1_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space2_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
ret = H5Sget_simple_extent_dims(space3_id, out_dims, out_maxdims);
CHECK_I(ret, "H5Sget_simple_extent_dims");
for(x=0; x<EXTEND_NDIMS; ++x) {
VERIFY(out_dims[x], dims2[x], "H5Sget_simple_extent_dims");
VERIFY(out_maxdims[x], max_dims[x], "H5Sget_simple_extent_dims");
}
/* Close all three dataspaces */
ret = H5Sclose(space1_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space2_id);
CHECK_I(ret, "H5Sclose");
ret = H5Sclose(space3_id);
CHECK_I(ret, "H5Sclose");
/* Close the datasets and file */
ret = H5Dclose(dset1_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset2_id);
CHECK_I(ret, "H5Dclose");
ret = H5Dclose(dset3_id);
CHECK_I(ret, "H5Dclose");
ret = H5Fclose(file_id);
CHECK_I(ret, "H5Fclose");
/* Cleanup */
ret = H5Sclose(orig_space_id);
CHECK_I(ret, "H5Sclose");
ret = H5Pclose(dcpl_id);
CHECK_I(ret, "H5Pclose");
/* Retrieve current # of errors */
if(old_nerrs == GetTestNumErrs())
return(0);
else
return(-1);
} /* end test_sohm_extend_dset_helper() */
/*-------------------------------------------------------------------------
* Function: test_sohm_extend_dset
*
* Purpose: Test extended shared dataspaces. An extended dataset's
* dataspace will change, possibly confusing the shared message
* code.
*
* Programmer: James Laird
* Wednesday, January 10, 2007
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
test_sohm_extend_dset(void)
{
hid_t fcpl_id = -1;
herr_t ret;
/* Create fcpl */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl_id, "H5Pcreate");
/* Test extending datasets with different FCPLs */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
/* No shared messages */
ret = test_sohm_extend_dset_helper(fcpl_id, FALSE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
ret = test_sohm_extend_dset_helper(fcpl_id, TRUE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
/* Only dataspaces */
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG, 16);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = test_sohm_extend_dset_helper(fcpl_id, FALSE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
ret = test_sohm_extend_dset_helper(fcpl_id, TRUE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
/* All messages */
ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 16);
CHECK_I(ret, "H5Pset_shared_mesg_index");
ret = test_sohm_extend_dset_helper(fcpl_id, FALSE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
ret = test_sohm_extend_dset_helper(fcpl_id, TRUE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
/* All messages in lists */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 100, 50);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_extend_dset_helper(fcpl_id, FALSE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
ret = test_sohm_extend_dset_helper(fcpl_id, TRUE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
/* All messages in lists converted to B-trees */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 1, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_extend_dset_helper(fcpl_id, FALSE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
ret = test_sohm_extend_dset_helper(fcpl_id, TRUE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
/* All messages in B-trees */
ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
ret = test_sohm_extend_dset_helper(fcpl_id, FALSE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
ret = test_sohm_extend_dset_helper(fcpl_id, TRUE);
CHECK_I(ret, "test_sohm_extend_dset_helper");
}
/*-------------------------------------------------------------------------
* Function: test_sohm_external_dtype
*
* Purpose: When a datatype is a SOHM type in one file, test that the
* second file using the same datatype actually save it in
* the file, too.
*
* Programmer: Raymond Lu
* 13 October, 2008
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
test_sohm_external_dtype(void)
{
typedef struct s1_t {
int a;
int b;
} s1_t;
s1_t *s_ptr, *orig;
hid_t fcpl, file1, file2;
hid_t dataset1, dataset2;
hid_t s1_tid, dset1_tid, dset2_tid, space;
hsize_t dims[2] = {NX, NY};
H5T_class_t dtype_class;
size_t dmsg_count;
unsigned x, i;
herr_t ret;
fcpl = H5Pcreate(H5P_FILE_CREATE);
CHECK_I(fcpl, "H5Pcreate");
/* Set up index values for sohm */
ret = H5Pset_shared_mesg_nindexes(fcpl, TEST_NUM_INDEXES);
CHECK_I(ret, "H5Pset_shared_mesg_nindexes");
for(x=0; x<TEST_NUM_INDEXES; ++x)
{
ret = H5Pset_shared_mesg_index(fcpl, x, test_type_flags[x], test_minsizes[x]);
CHECK_I(ret, "H5Pset_shared_mesg_index");
}
ret = H5Pset_shared_mesg_phase_change(fcpl, TEST_L2B, TEST_B2L);
CHECK_I(ret, "H5Pset_shared_mesg_phase_change");
/* Create the data space */
space = H5Screate_simple(2, dims, NULL);
CHECK_I(space, "H5Screate_simple");
/* Create a data type for s1_t */
s1_tid = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK_I(s1_tid, "H5Tcreate");
ret = H5Tinsert(s1_tid, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT);
CHECK_I(ret, "H5Tinsert");
ret = H5Tinsert (s1_tid, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT);
CHECK_I(ret, "H5Tinsert");
/* Create the first file for this test */
file1 = H5Fcreate(FILENAME_SRC, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT);
CHECK_I(file1, "H5Fcreate");
/* Check on datatype storage status. It should be zero now. */
ret = H5F_get_sohm_mesg_count_test(file1, H5O_DTYPE_ID, &dmsg_count);
CHECK(ret, FAIL, "H5F_get_sohm_mesg_count_test");
VERIFY(dmsg_count, 0, "H5F_get_sohm_mesg_count_test");
/* Create data set */
dataset1 = H5Dcreate2(file1, "dataset_1", s1_tid, space, H5P_DEFAULT, H5P_DEFAULT,
H5P_DEFAULT);
CHECK_I(dataset1, "H5Dcreate2");
/* Check on datatype storage status. It should be 1 now. */
ret = H5F_get_sohm_mesg_count_test(file1, H5O_DTYPE_ID, &dmsg_count);
CHECK(ret, FAIL, "H5F_get_sohm_mesg_count_test");
VERIFY(dmsg_count, 1, "H5F_get_sohm_mesg_count_test");
/* Retieve the dataset's datatype */
dset1_tid = H5Dget_type(dataset1);
CHECK_I(dset1_tid, "H5Dget_type");
/* Allocate space and initialize data */
orig = (s1_t*)malloc(NX * NY * sizeof(s1_t));
for(i=0; i<NX*NY; i++) {
s_ptr = (s1_t*)orig + i;
s_ptr->a = i*3 + 1;
s_ptr->b = i*3 + 2;
}
/* Write the data to the dataset1 */
ret = H5Dwrite(dataset1, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, orig);
CHECK_I(ret, "H5Dwrite");
ret = H5Dclose(dataset1);
CHECK_I(ret, "H5Dclose");
/* Create the second file for this test */
file2 = H5Fcreate(FILENAME_DST, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT);
CHECK_I(file2, "H5Fcreate");
/* Check on datatype storage status. It should be zero now. */
ret = H5F_get_sohm_mesg_count_test(file2, H5O_DTYPE_ID, &dmsg_count);
CHECK(ret, FAIL, "H5F_get_sohm_mesg_count_test");
VERIFY(dmsg_count, 0, "H5F_get_sohm_mesg_count_test");
/* Create a data set using the datatype of the dataset in the first file. */
dataset2 = H5Dcreate2(file2, "dataset_2", dset1_tid, space, H5P_DEFAULT, H5P_DEFAULT,
H5P_DEFAULT);
CHECK_I(dataset2, "H5Dcreate2");
/* Check on datatype storage status. It should be 1 now. */
ret = H5F_get_sohm_mesg_count_test(file2, H5O_DTYPE_ID, &dmsg_count);
CHECK(ret, FAIL, "H5F_get_sohm_mesg_count_test");
VERIFY(dmsg_count, 1, "H5F_get_sohm_mesg_count_test");
/* Write the data to the dataset2 */
ret = H5Dwrite(dataset2, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, orig);
CHECK_I(ret, "H5Dwrite");
ret = H5Dclose(dataset2);
CHECK_I(ret, "H5Dclose");
/* Close file 1 and the dataset's datatype in file 1. Verify that the datatype in
* file 2 is still accessible. */
ret = H5Tclose(dset1_tid);
CHECK_I(ret, "H5Tclose");
ret = H5Fclose(file1);
CHECK_I(ret, "H5Fclose");
/* Open the dataset in file 2 */
dataset2 = H5Dopen2(file2, "dataset_2", H5P_DEFAULT);
CHECK_I(dataset2, "H5Dopen2");
/* Retieve the dataset's datatype */
dset2_tid = H5Dget_type(dataset2);
CHECK_I(dset2_tid, "H5Dget_type");
/* Verify the datatype is compound */
dtype_class = H5Tget_class(dset2_tid);
VERIFY(dtype_class, H5T_COMPOUND, "H5Tget_class");
ret = H5Tclose(dset2_tid);
CHECK_I(ret, "H5Tclose");
ret = H5Dclose(dataset2);
CHECK_I(ret, "H5Dclose");
/* Finishing test and release resources */
ret = H5Sclose(space);
CHECK_I(ret, "H5Sclose");
ret = H5Tclose(s1_tid);
CHECK_I(ret, "H5Tclose");
ret = H5Pclose(fcpl);
CHECK_I(ret, "H5Pclose");
ret = H5Fclose(file2);
CHECK_I(ret, "H5Fclose");
free(orig);
}
/****************************************************************
**
** test_sohm(): Main Shared Object Header Message testing routine.
**
****************************************************************/
void
test_sohm(void)
{
/* Output message about test being performed */
MESSAGE(5, ("Testing Shared Object Header Messages\n"));
test_sohm_fcpl(); /* Test SOHMs and file creation plists */
test_sohm_size1(); /* Tests the sizes of files with one SOHM */
test_sohm_attrs(); /* Tests shared messages in attributes */
test_sohm_size2(0); /* Tests the sizes of files with multiple SOHMs */
test_sohm_size2(1); /* Tests the sizes of files with multiple
* SOHMs, closing and reopening file after
* each write. */
test_sohm_delete(); /* Test deleting shared messages */
test_sohm_delete_revert(); /* Test that a file with SOHMs becomes an
* empty file again when they are deleted. */
#ifndef H5_CANNOT_OPEN_TWICE /* On VMS this test fails since it tries to
open target file the second time */
test_sohm_extlink(); /* Test SOHMs when external links are used */
#endif /* H5_CANNOT_OPEN_TWICE */
test_sohm_extend_dset(); /* Test extending shared datasets */
test_sohm_external_dtype(); /* Test using datatype in another file */
} /* test_sohm() */
/*-------------------------------------------------------------------------
* Function: cleanup_sohm
*
* Purpose: Cleanup temporary test files
*
* Return: none
*
* Programmer: James Laird
* October 9, 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void
cleanup_sohm(void)
{
remove(FILENAME);
remove(FILENAME_SRC);
remove(FILENAME_DST);
}
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