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hdf5/tools/h5diff/h5diffgentest.c
Dana Robinson d90e4acfa7 [svn-r27801] Minor warning fixes in the tools. 
Tested on: jam (too minor for h5committest)
2015-09-16 10:23:16 -05:00

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <stdio.h>
#include <stdlib.h>
#include "hdf5.h"
#include "H5private.h"
/*
* The output functions need a temporary buffer to hold a piece of the
* dataset while it's being printed. This constant sets the limit on the
* size of that temporary buffer in bytes. For efficiency's sake, choose the
* largest value suitable for your machine (for testing use a small value).
*/
/* Maximum size used in a call to malloc for a dataset
* NOTE: this value should stay in sync with the value defined in the tools
* library file: h5tools_utils.h
*/
hsize_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024);
/*-------------------------------------------------------------------------
* Program: h5diffgentest
*
* Purpose: generate files for h5diff testing
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
#define FILE1 "h5diff_basic1.h5"
#define FILE2 "h5diff_basic2.h5"
#define FILE3 "h5diff_types.h5"
#define FILE4 "h5diff_dtypes.h5"
#define FILE5 "h5diff_attr1.h5"
#define FILE6 "h5diff_attr2.h5"
#define FILE7 "h5diff_dset1.h5"
#define FILE8 "h5diff_dset2.h5"
#define FILE9 "h5diff_hyper1.h5"
#define FILE10 "h5diff_hyper2.h5"
#define FILE11 "h5diff_empty.h5"
#define FILE12 "h5diff_links.h5"
#define FILE13 "h5diff_softlinks.h5"
#define FILE14 "h5diff_linked_softlink.h5"
#define FILE15 "h5diff_extlink_src.h5"
#define FILE16 "h5diff_extlink_trg.h5"
#define FILE17 "h5diff_ext2softlink_src.h5"
#define FILE18 "h5diff_ext2softlink_trg.h5"
#define FILE19 "h5diff_dset_zero_dim_size1.h5"
#define FILE20 "h5diff_dset_zero_dim_size2.h5"
#define DANGLE_LINK_FILE1 "h5diff_danglelinks1.h5"
#define DANGLE_LINK_FILE2 "h5diff_danglelinks2.h5"
#define GRP_RECURSE_FILE1 "h5diff_grp_recurse1.h5"
#define GRP_RECURSE_FILE2 "h5diff_grp_recurse2.h5"
/* same structure via external links through files */
#define GRP_RECURSE1_EXT "h5diff_grp_recurse_ext1.h5"
#define GRP_RECURSE2_EXT1 "h5diff_grp_recurse_ext2-1.h5"
#define GRP_RECURSE2_EXT2 "h5diff_grp_recurse_ext2-2.h5"
#define GRP_RECURSE2_EXT3 "h5diff_grp_recurse_ext2-3.h5"
/* same structure, same obj name with different value */
#define EXCLUDE_FILE1_1 "h5diff_exclude1-1.h5"
#define EXCLUDE_FILE1_2 "h5diff_exclude1-2.h5"
/* different structure and obj names */
#define EXCLUDE_FILE2_1 "h5diff_exclude2-1.h5"
#define EXCLUDE_FILE2_2 "h5diff_exclude2-2.h5"
/* only one file has unique objs */
#define EXCLUDE_FILE3_1 "h5diff_exclude3-1.h5"
#define EXCLUDE_FILE3_2 "h5diff_exclude3-2.h5"
/* compound type with multiple vlen string types */
#define COMP_VL_STRS_FILE "h5diff_comp_vl_strs.h5"
/* attribute compre with verbose level */
#define ATTR_VERBOSE_LEVEL_FILE1 "h5diff_attr_v_level1.h5"
#define ATTR_VERBOSE_LEVEL_FILE2 "h5diff_attr_v_level2.h5"
/* file containing valid/invalid enum value mix */
#define ENUM_INVALID_VALUES "h5diff_enum_invalid_values.h5"
/* file with container types (array,vlen) with multiple compounds */
#define COMPS_COMPLEX1 "compounds_array_vlen1.h5"
#define COMPS_COMPLEX2 "compounds_array_vlen2.h5"
/* non-comparable dataset and attribute */
#define NON_COMPARBLES1 "non_comparables1.h5"
#define NON_COMPARBLES2 "non_comparables2.h5"
#define UIMAX 4294967295u /*Maximum value for a variable of type unsigned int */
#define STR_SIZE 3
#define GBLL ((unsigned long long) 1024 * 1024 *1024 )
#define MY_LINKCLASS 187
/* Dataspace of 0 dimension size */
#define SPACE1_RANK 2
#define SPACE1_DIM1 0
#define SPACE1_DIM2 0
/* A UD link traversal function. Shouldn't actually be called. */
static hid_t UD_traverse(H5_ATTR_UNUSED const char * link_name, H5_ATTR_UNUSED hid_t cur_group,
H5_ATTR_UNUSED const void * udata, H5_ATTR_UNUSED size_t udata_size, H5_ATTR_UNUSED hid_t lapl_id)
{
return -1;
}
const H5L_class_t UD_link_class[1] = {{
H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */
(H5L_type_t)MY_LINKCLASS, /* Link type id number */
"UD link class", /* name for debugging */
NULL, /* Creation callback */
NULL, /* Move/rename callback */
NULL, /* Copy callback */
UD_traverse, /* The actual traversal function */
NULL, /* Deletion callback */
NULL /* Query callback */
}};
/*-------------------------------------------------------------------------
* prototypes
*-------------------------------------------------------------------------
*/
/* tests called in main() */
static int test_basic(const char *fname1, const char *fname2, const char *fname3);
static int test_types(const char *fname);
static int test_datatypes(const char *fname);
static int test_attributes(const char *fname,int make_diffs);
static int test_datasets(const char *fname,int make_diffs);
static int test_special_datasets(const char *fname,int make_diffs);
static int test_hyperslab(const char *fname,int make_diffs);
static int test_link_name(const char *fname1);
static int test_soft_links(const char *fname1);
static int test_linked_softlinks(const char *fname1);
static int test_external_links(const char *fname1, const char *fname2);
static int test_ext2soft_links(const char *fname1, const char *fname2);
static int test_dangle_links(const char *fname1, const char *fname2);
static int test_group_recurse(const char *fname1, const char *fname2);
static int test_group_recurse2(void);
static int test_exclude_obj1(const char *fname1, const char *fname2);
static int test_exclude_obj2(const char *fname1, const char *fname2);
static int test_exclude_obj3(const char *fname1, const char *fname2);
static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int is_file_new);
static int test_attributes_verbose_level(const char *fname1, const char *fname2);
static int test_enums(const char *fname);
static void test_comps_array (const char *fname, const char *dset, const char *attr,int diff, int is_file_new);
static void test_comps_vlen (const char *fname, const char *dset,const char *attr, int diff, int is_file_new);
static void test_comps_array_vlen (const char *fname, const char *dset, const char *attr, int diff, int is_file_new);
static void test_comps_vlen_arry (const char *fname, const char *dset,const char *attr, int diff, int is_file_new);
static void test_data_nocomparables (const char *fname, int diff);
static void test_objs_nocomparables (const char *fname1, const char *fname2);
/* called by test_attributes() and test_datasets() */
static void write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs);
static void write_dset_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs);
static void gen_datareg(hid_t fid,int make_diffs);
/* utilities */
static int write_attr(hid_t loc_id,int rank,hsize_t *dims,const char *name,hid_t tid,void *buf);
static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *name,hid_t tid,void *buf);
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: main program
*
*-------------------------------------------------------------------------
*/
int main(void)
{
test_basic(FILE1, FILE2, FILE11);
test_types (FILE3);
test_datatypes(FILE4);
/* generate 2 files, the second call creates a similar file with differences */
test_attributes(FILE5,0);
test_attributes(FILE6,1);
/* test attributes with verbose level */
test_attributes_verbose_level(ATTR_VERBOSE_LEVEL_FILE1, ATTR_VERBOSE_LEVEL_FILE2);
/* generate 2 files, the second call creates a similar file with differences */
test_datasets(FILE7,0);
test_datasets(FILE8,1);
/* generate 2 files, the second call creates a similar file with differences */
test_hyperslab(FILE9,0);
test_hyperslab(FILE10,1);
test_link_name(FILE12);
test_soft_links(FILE13);
test_linked_softlinks(FILE14);
test_external_links(FILE15, FILE16);
test_ext2soft_links(FILE17, FILE18);
/* generate 2 files, the second call creates a similar file with differences */
test_special_datasets(FILE19,0);
test_special_datasets(FILE20,1);
test_dangle_links(DANGLE_LINK_FILE1, DANGLE_LINK_FILE2);
test_group_recurse(GRP_RECURSE_FILE1, GRP_RECURSE_FILE2);
test_group_recurse2();
test_exclude_obj1(EXCLUDE_FILE1_1, EXCLUDE_FILE1_2);
test_exclude_obj2(EXCLUDE_FILE2_1, EXCLUDE_FILE2_2);
test_exclude_obj3(EXCLUDE_FILE3_1, EXCLUDE_FILE3_2);
/* diff various multiple vlen and fixlen string types in a compound dataset */
test_comp_vlen_strings(COMP_VL_STRS_FILE, "group", 1);
test_comp_vlen_strings(COMP_VL_STRS_FILE, "group_copy", 0);
/* diff when invalid enum values are present.
* This will probably grow to involve more extensive testing of
* enums so it has been given its own test file and test (apart
* from the basic type testing).
*/
test_enums(ENUM_INVALID_VALUES);
/* -------------------------------------------------
* Create test files with dataset and attribute with container types
* (array, vlen) with multiple nested compound types.
*/
/* file1 */
test_comps_array(COMPS_COMPLEX1,"dset1", "attr1", 0, 1);
test_comps_vlen(COMPS_COMPLEX1,"dset2", "attr2", 0, 0);
test_comps_array_vlen(COMPS_COMPLEX1,"dset3", "attr3", 0, 0);
test_comps_vlen_arry(COMPS_COMPLEX1,"dset4", "attr4", 0, 0);
/* file2 */
test_comps_array(COMPS_COMPLEX2,"dset1", "attr1", 5, 1);
test_comps_vlen(COMPS_COMPLEX2,"dset2", "attr2",5, 0);
test_comps_array_vlen(COMPS_COMPLEX2,"dset3", "attr3", 5, 0);
test_comps_vlen_arry(COMPS_COMPLEX2,"dset4", "attr4", 5, 0);
/*-------------------------------------------------
* Create test files with non-comparable dataset and attributes with
* comparable datasets and attributes. All the comparables should display
* differences.
*/
test_data_nocomparables(NON_COMPARBLES1,0);
test_data_nocomparables(NON_COMPARBLES2,5);
/* common objects (same name) with different object types. HDFFV-7644 */
test_objs_nocomparables(NON_COMPARBLES1, NON_COMPARBLES2);
return 0;
}
/*-------------------------------------------------------------------------
* Function: test_basic
*
* Purpose: Create basic test files, first two contains different data, the
* third one is just an empty file.
*
*-------------------------------------------------------------------------
*/
static
int test_basic(const char *fname1, const char *fname2, const char *fname3)
{
hid_t fid1, fid2;
hid_t gid1, gid2, gid3;
hsize_t dims1[1] = { 6 };
hsize_t dims2[2] = { 3,2 };
/* create the empty file */
if ((fid1=H5Fcreate(fname3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0){
fprintf(stderr, "empty file (%s) creation failed.\n", fname3);
goto out;
}
if (H5Fclose(fid1) < 0){
fprintf(stderr, "empty file (%s) close failed.\n", fname3);
goto out;
}
/*-------------------------------------------------------------------------
* create two files
*-------------------------------------------------------------------------
*/
if (( fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0 )
goto out;
if (( fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0 )
goto out;
/*-------------------------------------------------------------------------
* create groups
*-------------------------------------------------------------------------
*/
gid1 = H5Gcreate2(fid1, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
gid2 = H5Gcreate2(fid2, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
gid3 = H5Gcreate2(fid2, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* tests:
* # 1.1 normal mode
* # 1.2 normal mode with objects
* # 1.3 report mode
* # 1.4 report mode with objects
* # 1.5 with -d
*-------------------------------------------------------------------------
*/
{
double data1[3][2] = {{ 1.0F, 1.0F}, { 1.00F, 1.000F}, { 0.0F, 0.0F}};
double data2[3][2] = {{ 0.0F, 1.1F}, { 1.01F, 1.001F}, { 0.0F, 1.0F}};
double data3[3][2] = {{100.0F, 100.0F}, {100.00F, 100.000F}, {100.0F, 100.0F}};
double data4[3][2] = {{105.0F, 120.0F}, {160.00F, 95.000F}, { 80.0F, 40.0F}};
write_dset(gid1,2,dims2,"dset1",H5T_NATIVE_DOUBLE,data1);
write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_DOUBLE,data2);
write_dset(gid1,2,dims2,"dset3",H5T_NATIVE_DOUBLE,data3);
write_dset(gid2,2,dims2,"dset4",H5T_NATIVE_DOUBLE,data4);
write_dset(gid2,2,dims2,"dset1",H5T_NATIVE_DOUBLE,data2);
}
/*-------------------------------------------------------------------------
* relative error, compare divide by zero, both zero
* # 1.6.1 with -p (int)
*-------------------------------------------------------------------------
*/
{
int data5[3][2] = {{100,100},{100,0},{0,100}};
int data6[3][2] = {{120,80}, {0,100},{0,50}};
write_dset(gid1,2,dims2,"dset5",H5T_NATIVE_INT,data5);
write_dset(gid1,2,dims2,"dset6",H5T_NATIVE_INT,data6);
}
/*-------------------------------------------------------------------------
* relative error, compare divide by zero, both zero
* # 1.6.2 with -p (unsigned long long)
*-------------------------------------------------------------------------
*/
{
unsigned long long data7[3][2] = {{100,100},{100,0},{0,100}};
unsigned long long data8[3][2] = {{120,80}, {0,100},{0,50}};
write_dset(gid1,2,dims2,"dset7",H5T_NATIVE_ULLONG,data7);
write_dset(gid1,2,dims2,"dset8",H5T_NATIVE_ULLONG,data8);
}
/*-------------------------------------------------------------------------
* relative error, compare divide by zero, both zero
* # 1.6.3 with -p (double)
*
* A B 1-B/A %
* 100 120 0.2 20
* 100 80 0.2 20
* 100 0 1 100
* 0 100 #DIV/0! #DIV/0!
* 0 0 #DIV/0! #DIV/0!
* 100 50 0.5 50
*-------------------------------------------------------------------------
*/
{
double data9[3][2] = {{100.0F, 100.0F}, {100.0F, 0.0F}, {0.0F, 100.0F}};
double data10[3][2] ={{120.0F, 80.0F}, { 0.0F, 100.0F}, {0.0F, 50.0F}};
write_dset(gid1,2,dims2,"dset9",H5T_NATIVE_DOUBLE,data9);
write_dset(gid1,2,dims2,"dset10",H5T_NATIVE_DOUBLE,data10);
}
/*-------------------------------------------------------------------------
* test floating point comparison
*-------------------------------------------------------------------------
*/
{
/* epsilon = 0.0000001 = 1e-7
* system epsilon for float : FLT_EPSILON = 1.19209E-07
*/
float data11[3][2] ={{0.000000f,0.0000001f},{0.0000001f, 0.00000022f},{0.0000001f,0.0000001f}};
float data12[3][2] ={{0.000000f,0.0000002f},{0.0000003f,0.0000001f},{0.000000f,0.0000001f}};
/* epsilon = 0.0000000000000001 = 1e-16
* system epsilon for double : DBL_EPSILON = 2.22045E-16
*/
double data13[3][2] ={
{H5_DOUBLE(0.0000000000000000), H5_DOUBLE(0.0000000000000001)},
{H5_DOUBLE(0.0000000000000001), H5_DOUBLE(0.0000000000000000)},
{H5_DOUBLE(0.00000000000000033), H5_DOUBLE(0.0000000000000001)}};
double data14[3][2] ={
{H5_DOUBLE(0.0000000000000000), H5_DOUBLE(0.0000000000000004)},
{H5_DOUBLE(0.0000000000000002), H5_DOUBLE(0.0000000000000001)},
{H5_DOUBLE(0.0000000000000001), H5_DOUBLE(0.00000000000000000)}};
write_dset(gid1,2,dims2,"fp1",H5T_NATIVE_FLOAT,data11);
write_dset(gid1,2,dims2,"fp2",H5T_NATIVE_FLOAT,data12);
write_dset(gid1,2,dims2,"d1",H5T_NATIVE_DOUBLE,data13);
write_dset(gid1,2,dims2,"d2",H5T_NATIVE_DOUBLE,data14);
}
#if H5_SIZEOF_LONG_DOUBLE !=0
{
/*-------------------------------------------------------------------------
* H5T_NATIVE_LDOUBLE
*-------------------------------------------------------------------------
*/
long double data15[3][2] ={{1.0L,1.0L},{1.0L,1.0L},{1.0L,1.0L}};
write_dset(gid1,2,dims2,"ld",H5T_NATIVE_LDOUBLE,data15);
}
#endif
/*-------------------------------------------------------------------------
* NaNs in H5T_NATIVE_FLOAT
*-------------------------------------------------------------------------
*/
{
float data15[6];
float data16[6];
data15[0] = (float)HDsqrt(-1.0F);
data15[1] = 1.0F;
data15[2] = (float)HDsqrt(-1.0F);
data15[3] = 1.0F;
data15[4] = 1.0F;
data15[5] = 1.0F;
data16[0] = (float)HDsqrt(-1.0F);
data16[1] = (float)HDsqrt(-1.0F);
data16[2] = 1.0F;
data16[3] = 1.0F;
data16[4] = 1.0F;
data16[5] = 1.0F;
write_dset(gid1,1,dims1,"fp15",H5T_NATIVE_FLOAT,data15);
write_dset(gid1,1,dims1,"fp16",H5T_NATIVE_FLOAT,data16);
}
/*-------------------------------------------------------------------------
* NaNs in H5T_NATIVE_DOUBLE
*-------------------------------------------------------------------------
*/
{
double data17[6];
double data18[6];
data17[0] = HDsqrt(-1.0F);
data17[1] = 1.0F;
data17[2] = HDsqrt(-1.0F);
data17[3] = 1.0F;
data17[4] = 1.0F;
data17[5] = 1.0F;
data18[0] = HDsqrt(-1.0F);
data18[1] = HDsqrt(-10000.0F);
data18[2] = 1.0F;
data18[3] = 1.0F;
data18[4] = 1.0F;
data18[5] = 1.0F;
write_dset(gid1,1,dims1,"fp17",H5T_NATIVE_DOUBLE,data17);
write_dset(gid1,1,dims1,"fp18",H5T_NATIVE_DOUBLE,data18);
write_dset(gid1,1,dims1,"fp18_COPY",H5T_NATIVE_DOUBLE,data18);
}
/*------------------------------------------------------------------------
* INFINITY values
*------------------------------------------------------------------------
*/
{
float data19[6];
double data20[6];
data19[0] = data19[1] = data19[2] = (float)HDlog(0.0F);
data19[3] = data19[4] = data19[5] = (float)-HDlog(0.0F);
data20[0] = data20[1] = data20[2] = HDlog(0.0F);
data20[3] = data20[4] = data20[5] = -HDlog(0.0F);
write_dset(gid1,1,dims1,"fp19",H5T_NATIVE_FLOAT,data19);
write_dset(gid1,1,dims1,"fp19_COPY",H5T_NATIVE_FLOAT,data19);
write_dset(gid1,1,dims1,"fp20",H5T_NATIVE_DOUBLE,data20);
write_dset(gid1,1,dims1,"fp20_COPY",H5T_NATIVE_DOUBLE,data20);
}
/*-------------------------------------------------------------------------
* NaNs in H5T_NATIVE_DOUBLE and H5T_NATIVE_FLOAT inside H5T_COMPOUND
*-------------------------------------------------------------------------
*/
{
typedef struct cmp1_t
{
double d;
float f;
} cmp1_t;
cmp1_t buf1[2];
cmp1_t buf2[2];
hsize_t dims[1] = {2};
size_t type_size;
hid_t tid;
buf1[0].d = HDsqrt(-1.0F);
buf1[0].f = (float)HDsqrt(-1.0F);
buf2[0].d = HDsqrt(-1.0F);
buf2[0].f = (float)HDsqrt(-1.0F);
buf1[1].d = HDsqrt(-1.0F);
buf1[1].f = (float)HDsqrt(-1.0F);
buf2[1].d = 0.0F;
buf2[1].f = 0.0F;
type_size = sizeof( cmp1_t );
tid = H5Tcreate (H5T_COMPOUND, type_size );
H5Tinsert(tid, "d", HOFFSET( cmp1_t, d ), H5T_NATIVE_DOUBLE );
H5Tinsert(tid, "f", HOFFSET( cmp1_t, f ), H5T_NATIVE_FLOAT );
write_dset(gid1,1,dims,"dset11",tid,buf1);
write_dset(gid1,1,dims,"dset12",tid,buf2);
H5Tclose(tid);
}
/* not comparable objects */
{
typedef struct cmp1_t
{
double d;
int i;
} cmp1_t;
typedef struct cmp2_t
{
int i;
double d;
} cmp2_t;
typedef struct cmp3_t
{
int i;
} cmp3_t;
double data2[6] = {0.0F, 0.0F, 0.0F, 0.0F, 0.0F, 0.0F};
int data3[6] = {0,0,0,0,0,0};
int data4[3][2] = {{0,0},{0,0},{0,0}};
int data5[2][2] = {{0,0},{0,0}};
unsigned int data6[3][2] = {{0,0},{0,0},{0,0}};
cmp1_t data7[1] = {{1.0f, 2}};
cmp2_t data8[1] = {{1, 2.0f}};
hsize_t dims3[2] = {2, 2};
hsize_t dims4[1] = {1};
size_t type_size;
hid_t tid;
write_dset(gid3,1,dims1,"dset1",H5T_NATIVE_DOUBLE,NULL);
write_dset(gid3,1,dims1,"dset2",H5T_NATIVE_DOUBLE,data2);
write_dset(gid3,1,dims1,"dset3",H5T_NATIVE_INT,data3);
write_dset(gid3,2,dims2,"dset4",H5T_NATIVE_INT,data4);
write_dset(gid3,2,dims3,"dset5",H5T_NATIVE_INT,data5);
write_dset(gid3,2,dims2,"dset6",H5T_NATIVE_UINT,data6);
/* case of compound with different type members */
type_size = sizeof( cmp1_t );
tid = H5Tcreate (H5T_COMPOUND, type_size );
H5Tinsert(tid, "d", HOFFSET( cmp1_t, d ), H5T_NATIVE_DOUBLE );
H5Tinsert(tid, "i", HOFFSET( cmp1_t, i ), H5T_NATIVE_INT );
write_dset(gid3,1,dims4,"dset7",tid,data7);
H5Tclose(tid);
type_size = sizeof( cmp2_t );
tid = H5Tcreate (H5T_COMPOUND, type_size );
H5Tinsert(tid, "i", HOFFSET( cmp2_t, i ), H5T_NATIVE_INT );
H5Tinsert(tid, "d", HOFFSET( cmp2_t, d ), H5T_NATIVE_DOUBLE );
write_dset(gid3,1,dims4,"dset8",tid,data8);
H5Tclose(tid);
/* case of compound with different number of members */
type_size = sizeof( cmp3_t );
tid = H5Tcreate (H5T_COMPOUND, type_size );
H5Tinsert(tid, "i", HOFFSET( cmp2_t, i ), H5T_NATIVE_INT );
write_dset(gid3,1,dims4,"dset9",tid,NULL);
H5Tclose(tid);
}
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
H5Gclose(gid1);
H5Gclose(gid2);
H5Gclose(gid3);
H5Fclose(fid1);
H5Fclose(fid2);
return SUCCEED;
out:
return FAIL;
}
/*-------------------------------------------------------------------------
* Function: test_types
*
* Purpose: Compare different HDF5 object & link types:
* H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK, H5G_UDLINK
*
*-------------------------------------------------------------------------
*/
static
int test_types(const char *fname)
{
hid_t fid1;
hid_t gid1;
hid_t gid2;
hid_t tid1;
hid_t tid2;
herr_t status;
hsize_t dims[1]={1};
typedef struct s1_t
{
int a;
float b;
} s1_t;
typedef struct s2_t
{
int a;
} s2_t;
/*-------------------------------------------------------------------------
* Create one file
*-------------------------------------------------------------------------
*/
fid1 = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* H5G_DATASET
*-------------------------------------------------------------------------
*/
write_dset(fid1,1,dims,"dset",H5T_NATIVE_INT,0);
/*-------------------------------------------------------------------------
* H5G_GROUP
*-------------------------------------------------------------------------
*/
gid1 = H5Gcreate2(fid1, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Gclose(gid1);
gid2 = H5Gcreate2(fid1, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Gclose(gid2);
/*-------------------------------------------------------------------------
* H5G_TYPE
*-------------------------------------------------------------------------
*/
/* create and commit datatype 1 */
tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
H5Tinsert(tid1, "a", HOFFSET(s1_t, a), H5T_NATIVE_INT);
H5Tinsert(tid1, "b", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT);
H5Tcommit2(fid1, "t1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
H5Tclose(tid1);
/* create and commit datatype 2 */
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s2_t));
H5Tinsert(tid2, "a", HOFFSET(s2_t, a), H5T_NATIVE_INT);
H5Tcommit2(fid1, "t2", tid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
H5Tclose(tid2);
/*-------------------------------------------------------------------------
* H5G_LINK
*-------------------------------------------------------------------------
*/
status = H5Lcreate_soft("g1", fid1, "l1", H5P_DEFAULT, H5P_DEFAULT);
status = H5Lcreate_soft("g2", fid1, "l2", H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* H5G_UDLINK
*-------------------------------------------------------------------------
*/
H5Lcreate_external("filename", "objname", fid1, "ext_link", H5P_DEFAULT, H5P_DEFAULT);
H5Lregister(UD_link_class);
H5Lcreate_ud(fid1, "ud_link", (H5L_type_t)MY_LINKCLASS, NULL, (size_t)0, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* Close
*-------------------------------------------------------------------------
*/
status = H5Fclose(fid1);
return status;
}
/*
# ##############################################################################
# # not comparable types
# ##############################################################################
# 2.0
TOOLTEST h5diff_20.txt file3.h5 file3.h5 -v dset g1
# 2.1
TOOLTEST h5diff_21.txt file3.h5 file3.h5 -v dset l1
# 2.2
TOOLTEST h5diff_22.txt file3.h5 file3.h5 -v dset t1
# ##############################################################################
# # compare groups, types, links (no differences and differences)
# ##############################################################################
# 2.3
TOOLTEST h5diff_23.txt file3.h5 file3.h5 -v g1 g1
# 2.4
TOOLTEST h5diff_24.txt file3.h5 file3.h5 -v t1 t1
# 2.5
TOOLTEST h5diff_25.txt file3.h5 file3.h5 -v l1 l1
# 2.6
TOOLTEST h5diff_26.txt file3.h5 file3.h5 -v g1 g2
# 2.7
TOOLTEST h5diff_27.txt file3.h5 file3.h5 -v t1 t2
# 2.8
TOOLTEST h5diff_28.txt file3.h5 file3.h5 -v l1 l2
*/
/*-------------------------------------------------------------------------
* Function: test_datatypes
*
* Purpose: test dataset datatypes
*
*-------------------------------------------------------------------------
*/
static
int test_datatypes(const char *fname)
{
hid_t fid1;
hid_t dset;
hsize_t dims[2]={3,2};
herr_t status;
char buf1a[3][2] = {{1,1},{1,1},{1,1}};
char buf1b[3][2] = {{1,1},{3,4},{5,6}};
short buf2a[3][2] = {{1,1},{1,1},{1,1}};
short buf2b[3][2] = {{1,1},{3,4},{5,6}};
int buf3a[3][2] = {{1,1},{1,1},{1,1}};
int buf3b[3][2] = {{1,1},{3,4},{5,6}};
long buf4a[3][2] = {{1,1},{1,1},{1,1}};
long buf4b[3][2] = {{1,1},{3,4},{5,6}};
float buf5a[3][2] = {{1.0F, 1.0F}, {1.0F, 1.0F}, {1.0F, 1.0F}};
float buf5b[3][2] = {{1.0F, 1.0F}, {3.0F, 4.0F}, {5.0F, 6.0F}};
double buf6a[3][2] = {{1.0F, 1.0F}, {1.0F, 1.0F}, {1.0F, 1.0F}};
double buf6b[3][2] = {{1.0F, 1.0F}, {3.0F, 4.0F}, {5.0F, 6.0F}};
/*unsigned/signed test
signed char -128 to 127
unsigned char 0 to 255
*/
char buf7a[3][2] = {{-1,-128},{-1,-1},{-1,-1}};
unsigned char buf7b[3][2] = {{1,128},{1,1},{1,1}};
/* long long test */
long long buf8a[3][2] = {{1,1},{1,1},{1,1}};
long long buf8b[3][2] = {{1,1},{3,4},{5,6}};
unsigned long long buf9a[3][2] = {{1,1},{1,1},{1,1}};
unsigned long long buf9b[3][2] = {{1,1},{3,4},{5,6}};
unsigned int buf10a[3][2] = {{UIMAX,1},{1,1},{1,1}};
unsigned int buf10b[3][2] = {{UIMAX-1,1},{3,4},{5,6}};
unsigned short buf11a[3][2] = {{204,205},{2,3},{1,1}};
unsigned int buf11b[3][2] = {{204,205},{2,3},{1,1}};
/*-------------------------------------------------------------------------
* Create a file
*-------------------------------------------------------------------------
*/
fid1 = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* Check for different storage order. Give a warning if they are different
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset0a",H5T_STD_I16LE,buf2a);
write_dset(fid1,2,dims,"dset0b",H5T_STD_I32LE,buf3b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_CHAR
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset1a",H5T_NATIVE_CHAR,buf1a);
write_dset(fid1,2,dims,"dset1b",H5T_NATIVE_CHAR,buf1b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_SHORT
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset2a",H5T_NATIVE_SHORT,buf2a);
write_dset(fid1,2,dims,"dset2b",H5T_NATIVE_SHORT,buf2b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_INT
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset3a",H5T_NATIVE_INT,buf3a);
write_dset(fid1,2,dims,"dset3b",H5T_NATIVE_INT,buf3b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_LONG
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset4a",H5T_NATIVE_LONG,buf4a);
write_dset(fid1,2,dims,"dset4b",H5T_NATIVE_LONG,buf4b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_FLOAT
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset5a",H5T_NATIVE_FLOAT,buf5a);
write_dset(fid1,2,dims,"dset5b",H5T_NATIVE_FLOAT,buf5b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_DOUBLE
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset6a",H5T_NATIVE_DOUBLE,buf6a);
write_dset(fid1,2,dims,"dset6b",H5T_NATIVE_DOUBLE,buf6b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset7a",H5T_NATIVE_CHAR,buf7a);
write_dset(fid1,2,dims,"dset7b",H5T_NATIVE_UCHAR,buf7b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_LLONG
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset8a",H5T_NATIVE_LLONG,buf8a);
write_dset(fid1,2,dims,"dset8b",H5T_NATIVE_LLONG,buf8b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_ULLONG
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset9a",H5T_NATIVE_ULLONG,buf9a);
write_dset(fid1,2,dims,"dset9b",H5T_NATIVE_ULLONG,buf9b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_INT
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset10a",H5T_NATIVE_UINT,buf10a);
write_dset(fid1,2,dims,"dset10b",H5T_NATIVE_UINT,buf10b);
/*-------------------------------------------------------------------------
* Same type class, different size
*-------------------------------------------------------------------------
*/
write_dset(fid1,2,dims,"dset11a",H5T_STD_U16LE,buf11a);
dset=H5Dopen2 (fid1, "dset11a", H5P_DEFAULT);
write_attr(dset,2,dims,"attr",H5T_STD_U16LE,buf11a);
H5Dclose (dset);
write_dset(fid1,2,dims,"dset11b",H5T_STD_U32LE,buf11b);
dset=H5Dopen2 (fid1, "dset11b", H5P_DEFAULT);
write_attr(dset,2,dims,"attr",H5T_STD_U32LE,buf11b);
H5Dclose (dset);
/*-------------------------------------------------------------------------
* Close
*-------------------------------------------------------------------------
*/
status = H5Fclose(fid1);
return status;
}
/*
# ##############################################################################
# # Dataset datatypes
# ##############################################################################
# 5.0
TOOLTEST h5diff_50.txt file4.h5 file4.h5 -v dset0a dset0b
# 5.1
TOOLTEST h5diff_51.txt file4.h5 file4.h5 -v dset1a dset1b
# 5.2
TOOLTEST h5diff_52.txt file4.h5 file4.h5 -v dset2a dset2b
# 5.3
TOOLTEST h5diff_53.txt file4.h5 file4.h5 -v dset3a dset4b
# 5.4
TOOLTEST h5diff_54.txt file4.h5 file4.h5 -v dset4a dset4b
# 5.5
TOOLTEST h5diff_55.txt file4.h5 file4.h5 -v dset5a dset5b
# 5.6
TOOLTEST h5diff_56.txt file4.h5 file4.h5 -v dset6a dset6b
# 5.7
TOOLTEST h5diff_57.txt file4.h5 file4.h5 -v dset7a dset7b
# 5.8 (region reference)
TOOLTEST h5diff_58.txt file7.h5 file8.h5 -v refreg
*/
/*-------------------------------------------------------------------------
* Function: test_attributes
*
* Purpose: test attributes
*
*-------------------------------------------------------------------------
*/
static
int test_attributes(const char *file,
int make_diffs /* flag to modify data buffers */)
{
hid_t fid;
hid_t did;
hid_t gid;
hid_t root_id;
hid_t sid;
hsize_t dims[1]={2};
herr_t status;
/* Create a file */
if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
/* Create a 1D dataset */
sid = H5Screate_simple(1, dims, NULL);
did = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Sclose(sid);
assert(status >= 0);
/* Create groups */
gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
root_id = H5Gopen2(fid, "/", H5P_DEFAULT);
/*-------------------------------------------------------------------------
* write a series of attributes on the dataset, group, and root group
*-------------------------------------------------------------------------
*/
write_attr_in(did,"dset",fid,make_diffs);
write_attr_in(gid,NULL,(hid_t)0,make_diffs);
write_attr_in(root_id,NULL,(hid_t)0,make_diffs);
/* Close */
status = H5Dclose(did);
assert(status >= 0);
status = H5Gclose(gid);
assert(status >= 0);
status = H5Gclose(root_id);
assert(status >= 0);
/* Close file */
status = H5Fclose(fid);
assert(status >= 0);
return status;
}
/*-------------------------------------------------------------------------
* Function: test_attributes_verbose_level
*
* Purpose: Cresting test files for testing attributes along with
* levels of verbos option
*
*-------------------------------------------------------------------------
*/
static int test_attributes_verbose_level(const char *fname1, const char *fname2)
{
herr_t status = SUCCEED;
hid_t fid1 = -1, fid2 = -1;
hid_t f1_gid = -1, f2_gid = -1;
hid_t f1_gid2 = -1, f2_gid2 = -1;
hid_t f1_gid3 = -1, f2_gid3 = -1;
hid_t f1_gid4 = -1, f2_gid4 = -1;
hid_t f1_did = -1, f2_did = -1;
hid_t f1_sid = -1, f2_sid = -1;
hid_t f1_tid = -1, f2_tid = -1;
/* dset */
hsize_t dset_dims[1]={3};
int dset_data[3] = {0,1,2};
/* common attrs dim */
hsize_t attr_dims[1]={2};
/* file1 attr */
int f1_attr_idata[2]= {1,2}; /* integer */
float f1_attr_fdata[2]= {1.1F,2.2F}; /* float */
/* file2 attr */
int f2_attr_idata[2]= {2,3}; /* integer */
float f2_attr_fdata[2]= {2.1F,3.2F}; /* float */
/*----------------------------------------------------------------------
* Create file1
*-----------------------------------------------------------------------*/
if((fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
/*----------------------------------
* Groups
*/
f1_gid = H5Gcreate2(fid1, "g", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f1_gid < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
f1_gid2 = H5Gcreate2(fid1, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f1_gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
f1_gid3 = H5Gcreate2(fid1, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f1_gid3 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
f1_gid4 = H5Gcreate2(fid1, "g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f1_gid4 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*----------------------------------
* Datasets
*/
f1_sid = H5Screate_simple(1, dset_dims, NULL);
f1_did = H5Dcreate2(fid1, "dset", H5T_NATIVE_INT, f1_sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f1_did == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = H5Dwrite(f1_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
/*----------------------------------
* Named Datatype
*/
f1_tid = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(fid1, "ntype", f1_tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*----------------------------------------------------------------------
* Create file2
*-----------------------------------------------------------------------*/
if((fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*----------------------------------
* Groups
*/
f2_gid = H5Gcreate2(fid2, "g", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f2_gid < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
f2_gid2 = H5Gcreate2(fid2, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f2_gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
f2_gid3 = H5Gcreate2(fid2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f2_gid3 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
f2_gid4 = H5Gcreate2(fid2, "g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f2_gid4 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*----------------------------------
* Datasets
*/
f2_sid = H5Screate_simple(1, dset_dims, NULL);
f2_did = H5Dcreate2(fid2, "dset", H5T_NATIVE_INT, f2_sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (f2_did == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = H5Dwrite(f2_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname2);
status = FAIL;
goto out;
}
/*----------------------------------
* Named Datatype
*/
f2_tid = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(fid2, "ntype", f2_tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*----------------------------------
* CASE1 - Same attr number, all Same attr name
* add attr to group
*/
write_attr(f1_gid,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata);
write_attr(f1_gid,1,attr_dims,"float1",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f2_gid,1,attr_dims,"integer1",H5T_NATIVE_INT,f2_attr_idata);
write_attr(f2_gid,1,attr_dims,"float1",H5T_NATIVE_FLOAT,f2_attr_fdata);
/*----------------------------------
* CASE2 - Same attr number, some Same attr name
* add attr to dset
*/
write_attr(f1_did,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata);
write_attr(f1_did,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f2_did,1,attr_dims,"integer1",H5T_NATIVE_INT,f2_attr_idata);
write_attr(f2_did,1,attr_dims,"float3",H5T_NATIVE_FLOAT,f2_attr_fdata);
/*----------------------------------
* CASE3 - Same attr number, all different attr name
* add attr to ntype
*/
write_attr(f1_tid,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata);
write_attr(f1_tid,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f1_tid,1,attr_dims,"float3",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f2_tid,1,attr_dims,"integer4",H5T_NATIVE_INT,f2_attr_idata);
write_attr(f2_tid,1,attr_dims,"float5",H5T_NATIVE_FLOAT,f2_attr_fdata);
write_attr(f2_tid,1,attr_dims,"float6",H5T_NATIVE_FLOAT,f2_attr_fdata);
/*----------------------------------
* CASE4 - Different attr number, some same attr name (vs file2-g2)
* add attr to g2
*/
write_attr(f1_gid2,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata);
write_attr(f1_gid2,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f1_gid2,1,attr_dims,"float3",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f2_gid2,1,attr_dims,"integer1",H5T_NATIVE_INT,f2_attr_idata);
write_attr(f2_gid2,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f2_attr_fdata);
/*----------------------------------
* CASE5 - Different attr number, all different attr name
* add attr to g3
*/
write_attr(f1_gid3,1,attr_dims,"integer10",H5T_NATIVE_INT,f1_attr_idata);
write_attr(f1_gid3,1,attr_dims,"float11",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f1_gid3,1,attr_dims,"float12",H5T_NATIVE_FLOAT,f1_attr_fdata);
write_attr(f2_gid3,1,attr_dims,"integer3",H5T_NATIVE_INT,f2_attr_idata);
write_attr(f2_gid3,1,attr_dims,"float4",H5T_NATIVE_FLOAT,f2_attr_fdata);
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1 > 0)
H5Fclose(fid1);
if(fid2 > 0)
H5Fclose(fid2);
if(f1_gid > 0)
H5Gclose(f1_gid);
if(f2_gid > 0)
H5Gclose(f2_gid);
if(f1_gid2 > 0)
H5Gclose(f1_gid2);
if(f2_gid2 > 0)
H5Gclose(f2_gid2);
if(f1_gid3 > 0)
H5Gclose(f1_gid3);
if(f2_gid3 > 0)
H5Gclose(f2_gid3);
if(f1_gid4 > 0)
H5Gclose(f1_gid4);
if(f2_gid4 > 0)
H5Gclose(f2_gid4);
if(f1_did > 0)
H5Dclose(f1_did);
if(f2_did > 0)
H5Dclose(f2_did);
if(f1_sid > 0)
H5Sclose(f1_sid);
if(f2_sid > 0)
H5Sclose(f2_sid);
if(f1_tid > 0)
H5Tclose(f1_tid);
if(f2_tid > 0)
H5Tclose(f2_tid);
return status;
}
/*-------------------------------------------------------------------------
* Function: test_datasets
*
* Purpose: Check all HDF5 classes
* H5T_INTEGER, H5T_FLOAT
* H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE,
* H5T_ENUM, H5T_VLEN, H5T_ARRAY
*
*-------------------------------------------------------------------------
*/
static
int test_datasets(const char *file,
int make_diffs /* flag to modify data buffers */)
{
hid_t fid;
hid_t did;
hid_t gid;
hid_t sid;
hsize_t dims[1]={2};
herr_t status;
int buf[2]={1,2};
if(make_diffs)
memset(buf, 0, sizeof buf);
/* Create a file */
if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
/* Create a 1D dataset */
sid = H5Screate_simple(1, dims, NULL);
did = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
status = H5Sclose(sid);
assert(status >= 0);
/* Create a group */
gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* write a series of datasets on the group
*-------------------------------------------------------------------------
*/
write_dset_in(gid,"/dset",fid,make_diffs);
/* close */
status = H5Dclose(did);
assert(status >= 0);
status = H5Gclose(gid);
assert(status >= 0);
/* close file */
status = H5Fclose(fid);
assert(status >= 0);
return status;
}
/*-------------------------------------------------------------------------
* Function: test_special_datasets
*
* Purpose: Check datasets with datasapce of zero dimension size.
*-------------------------------------------------------------------------
*/
static
int test_special_datasets(const char *file,
int make_diffs /* flag to modify data buffers */)
{
hid_t fid;
hid_t did;
hid_t sid0, sid;
hsize_t dims0[SPACE1_RANK]={SPACE1_DIM1, SPACE1_DIM2};
hsize_t dims[SPACE1_RANK]={SPACE1_DIM1, SPACE1_DIM2};
herr_t status;
/* Create a file */
if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
/* Create a dataset with zero dimension size */
sid0 = H5Screate_simple(SPACE1_RANK, dims0, NULL);
did = H5Dcreate2(fid, "dset1", H5T_NATIVE_INT, sid0, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* close dataset */
status = H5Dclose(did);
assert(status >= 0);
/* close dataspace */
status = H5Sclose(sid0);
assert(status >= 0);
/* Create a dataset with zero dimension size in one file but the other one
* has a dataset with a non-zero dimension size */
if(make_diffs) {
dims[1] = SPACE1_DIM2 + 4;
}
sid = H5Screate_simple(SPACE1_RANK, dims, NULL);
did = H5Dcreate2(fid, "dset2", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* close dataspace */
status = H5Sclose(sid);
assert(status >= 0);
/* close dataset */
status = H5Dclose(did);
assert(status >= 0);
/* close file */
status = H5Fclose(fid);
assert(status >= 0);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files to compare links, one has longer name than
* the other and short name is subset of long name.
*
* Programmer: Jonathan Kim (Feb 17, 2010)
*
*-------------------------------------------------------------------------*/
static int test_link_name(const char *fname1)
{
hid_t fid1=0;
hid_t gid1=0;
hid_t gid2=0;
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
gid1 = H5Gcreate2(fid1, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
gid2 = H5Gcreate2(fid1, "group_longname", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Soft Links
*------------------------------------------------------------------------*/
status = H5Lcreate_soft("group", fid1, "link_g1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("group_longname", fid1, "link_g2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*------------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(gid1)
H5Gclose(gid1);
if(gid2)
H5Gclose(gid2);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files to compare soft links in various way
*
* Programmer: Jonathan Kim (Feb 17, 2010)
*
*-------------------------------------------------------------------------*/
static int test_soft_links(const char *fname1)
{
hid_t fid1=0;
hid_t gid1=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}};
int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
gid1 = H5Gcreate2(fid1, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(fid1,2,dims2,"target_dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(fid1,2,dims2,"target_dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid1,2,dims2,"dset",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Soft Links
*------------------------------------------------------------------------*/
/* file 1 */
status = H5Lcreate_soft("/target_dset1", fid1, "softlink_dset1_1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/target_dset1", fid1, "softlink_dset1_2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/target_dset2", fid1, "softlink_dset2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/target_group", fid1, "softlink_group1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/target_group", fid1, "softlink_group2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/no_obj", fid1, "softlink_noexist", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(gid1)
H5Gclose(gid1);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files to compare linked soft links in various way
*
* Programmer: Jonathan Kim (Feb 17, 2010)
*
*-------------------------------------------------------------------------*/
static int test_linked_softlinks(const char *fname1)
{
hid_t fid1=0;
hid_t gid1=0;
hid_t gid2=0;
hid_t gid3=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}};
int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
gid1 = H5Gcreate2(fid1, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
gid2 = H5Gcreate2(fid1, "target_group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
gid3 = H5Gcreate2(fid1, "target_group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid3 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(fid1,2,dims2,"target_dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(fid1,2,dims2,"target_dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid1,2,dims2,"dset",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Soft Links (Linked)
*------------------------------------------------------------------------*/
/*---------
* file 1 */
status = H5Lcreate_soft("/target_dset1", fid1, "softlink1_to_dset1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink1_to_dset1", fid1, "softlink1_to_slink1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink1_to_slink1", fid1, "softlink1_to_slink2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/target_dset2", fid1, "softlink2_to_dset2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink2_to_dset2", fid1, "softlink2_to_slink1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink2_to_slink1", fid1, "softlink2_to_slink2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("target_group1", fid1, "softlink3_to_group1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink3_to_group1", fid1, "softlink3_to_slink1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink3_to_slink1", fid1, "softlink3_to_slink2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("target_group2", fid1, "softlink4_to_group2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink4_to_group2", fid1, "softlink4_to_slink1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("softlink4_to_slink1", fid1, "softlink4_to_slink2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(gid1)
H5Gclose(gid1);
if(gid2)
H5Gclose(gid2);
if(gid3)
H5Gclose(gid3);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files to compare external links in various way
*
* Programmer: Jonathan Kim (Feb 17, 2010)
*
*-------------------------------------------------------------------------*/
static int test_external_links(const char *fname1, const char *fname2)
{
hid_t fid1=0;
hid_t fid2=0;
hid_t gid1=0;
hid_t gid2=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}};
int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
/* source file */
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
/* target file */
fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
/*--------------
* target file */
gid1 = H5Gcreate2(fid2, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
gid2 = H5Gcreate2(fid2, "target_group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/*--------------
* target file */
status = write_dset(fid2,2,dims2,"target_dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid1,2,dims2,"x_dset",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid2,2,dims2,"x_dset",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* External Links
*------------------------------------------------------------------------*/
/*--------------*/
/* source file */
status = H5Lcreate_external(fname2, "/target_group/x_dset", fid1, "ext_link_dset1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/target_group2/x_dset", fid1, "ext_link_dset2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/target_group", fid1, "/ext_link_grp1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/target_group2", fid1, "/ext_link_grp2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "no_obj", fid1, "ext_link_noexist1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external("no_file.h5", "no_obj", fid1, "ext_link_noexist2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
if(gid1)
H5Gclose(gid1);
if(gid2)
H5Gclose(gid2);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files to compare external links which point to
* soft link in various way
*
* Programmer: Jonathan Kim (Feb 17, 2010)
*
*-------------------------------------------------------------------------*/
static int test_ext2soft_links(const char *fname1, const char *fname2)
{
hid_t fid1=0;
hid_t fid2=0;
hid_t gid2=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}};
int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
/* source file */
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
/* target file */
fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
/* target file */
gid2 = H5Gcreate2(fid2, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/*--------------
* target file */
status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(fid2,2,dims2,"dset2",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Soft Links (Linked)
*------------------------------------------------------------------------*/
/*---------------
* target file */
status = H5Lcreate_soft("/dset1", fid2, "softlink_to_dset1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/dset2", fid2, "softlink_to_dset2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* External Links
*------------------------------------------------------------------------*/
/*---------------
* source file */
status = H5Lcreate_external(fname2, "/target_group", fid1, "ext_link", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/softlink_to_dset1", fid1, "ext_link_to_slink1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/softlink_to_dset2", fid1, "ext_link_to_slink2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
if(gid2)
H5Gclose(gid2);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files to compare dangling links in various way
*
* Programmer: Jonathan Kim (Feb 17, 2010)
*
*-------------------------------------------------------------------------*/
static int test_dangle_links(const char *fname1, const char *fname2)
{
hid_t fid1=0;
hid_t fid2=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}};
int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(fid1,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(fid2,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Soft Links
*------------------------------------------------------------------------*/
/* file 1 */
status = H5Lcreate_soft("no_obj", fid1, "soft_link1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/dset1", fid1, "soft_link2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("no_obj", fid1, "soft_link3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("no_obj1", fid1, "soft_link4", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
/* file 2 */
status = H5Lcreate_soft("no_obj", fid2, "soft_link1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("no_obj", fid2, "soft_link2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/dset2", fid2, "soft_link3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("no_obj2", fid2, "soft_link4", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* External Links
*------------------------------------------------------------------------*/
/* file1 */
status = H5Lcreate_external(fname2, "no_obj", fid1, "ext_link1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/dset1", fid1, "ext_link2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "no_obj", fid1, "ext_link3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external("no_file.h5", "no_obj", fid1, "ext_link4", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = H5Lcreate_external(fname1, "no_obj", fid2, "ext_link1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname1, "no_obj", fid2, "ext_link2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname1, "/dset2", fid2, "ext_link3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_external("no_file.h5", "no_obj", fid2, "ext_link4", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: For testing comparing group member objects recursively
*
* Programmer: Jonathan Kim (Aug 19, 2010)
*
*-------------------------------------------------------------------------*/
static int test_group_recurse(const char *fname1, const char *fname2)
{
hid_t fid1=0;
hid_t fid2=0;
hid_t gid1_f1=0, gid2_f1=0, gid3_f1=0, gid10_f1=0;
hid_t gid1_f2=0, gid2_f2=0, gid3_f2=0, gid11_f2=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,1},{0,1},{1,0},{1,0}};
int data2[4][2] = {{0,2},{0,2},{2,0},{2,0}};
int data3[4][2] = {{0,3},{0,3},{3,0},{3,0}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
/* file1 */
gid1_f1 = H5Gcreate2(fid1, "/grp1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1_f1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
gid2_f1 = H5Gcreate2(fid1, "/grp1/grp2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2_f1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
gid3_f1 = H5Gcreate2(fid1, "/grp1/grp2/grp3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid3_f1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
gid10_f1 = H5Gcreate2(fid1, "/grp10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid10_f1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
gid1_f2 = H5Gcreate2(fid2, "/grp1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1_f2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
gid2_f2 = H5Gcreate2(fid2, "/grp1/grp2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2_f2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
gid3_f2 = H5Gcreate2(fid2, "/grp1/grp2/grp3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid3_f2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
gid11_f2 = H5Gcreate2(fid2, "/grp11", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid11_f2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets under root
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(fid1,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(fid1,2,dims2,"dset3",H5T_NATIVE_INT,data3);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(fid2,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(fid2,2,dims2,"dset3",H5T_NATIVE_INT,data3);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets under group
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(gid1_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid2_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid2_f1,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid3_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid3_f1,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid3_f1,2,dims2,"dset3",H5T_NATIVE_INT,data3);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid10_f1,2,dims2,"dset4",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid10_f1,2,dims2,"dset5",H5T_NATIVE_INT,data3);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = write_dset(gid1_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid2_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid2_f2,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid3_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid3_f2,2,dims2,"dset2",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid3_f2,2,dims2,"dset3",H5T_NATIVE_INT,data3);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid11_f2,2,dims2,"dset4",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid11_f2,2,dims2,"dset5",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Soft Links
*------------------------------------------------------------------------*/
/* file 1 */
status = H5Lcreate_soft("/grp1", fid1, "slink_grp1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/grp1/grp2", fid1, "slink_grp2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/grp1/grp2/grp3", fid1, "slink_grp3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/grp10", fid1, "slink_grp10", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1);
status = FAIL;
goto out;
}
/* file 2 */
status = H5Lcreate_soft("/grp1", fid2, "slink_grp1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/grp1/grp2", fid2, "slink_grp2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/grp1/grp2/grp3", fid2, "slink_grp3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_soft("/grp11", fid2, "slink_grp11", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* External Links
*------------------------------------------------------------------------*/
/* file1 */
status = H5Lcreate_external(fname2, "/grp1", fid1, "elink_grp1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/grp1/grp2", fid1, "elink_grp2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname2, "/grp1/grp2/grp3", fid1, "elink_grp3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = H5Lcreate_external(fname1, "/grp1", fid2, "elink_grp1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname1, "/grp1/grp2", fid2, "elink_grp2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
status = H5Lcreate_external(fname1, "/grp1/grp2/grp3", fid2, "elink_grp3", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
/*------------------------------
* external circle route test
* file1/grp11 <-> file2/grp10 via elink_grp_circle link
*/
/* file1 */
status = H5Lcreate_external(fname2, "/grp11", gid10_f1, "elink_grp_circle", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = H5Lcreate_external(fname1, "/grp10", gid11_f2, "elink_grp_circle", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
if(gid1_f1)
H5Gclose(gid1_f1);
if(gid2_f1)
H5Gclose(gid2_f1);
if(gid3_f1)
H5Gclose(gid3_f1);
if(gid1_f2)
H5Gclose(gid1_f2);
if(gid2_f2)
H5Gclose(gid2_f2);
if(gid3_f2)
H5Gclose(gid3_f2);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose:
* For testing comparing group member objects recursively via multiple
* linked external links
*
* Programmer: Jonathan Kim (Sep 16, 2010)
*
*-------------------------------------------------------------------------*/
#define GRP_R_DSETNAME1 "dset1"
#define GRP_R_DSETNAME2 "dset2"
static int test_group_recurse2(void)
{
hid_t fileid1 = -1;
hid_t grp1 = -1;
hid_t grp2 = -1;
hid_t grp3 = -1;
hid_t grp4 = -1;
hid_t dset1 = -1;
hid_t dset2 = -1;
hid_t datatype = -1;
hid_t dataspace = -1;
hid_t fileid2 = -1;
hid_t fileid3 = -1;
hid_t fileid4 = -1;
hsize_t dimsf[2]; /* dataset dimensions */
herr_t status=0;
int data1[4][2] = {{0,0},{1,1},{2,2},{3,3}};
int data2[4][2] = {{0,0},{0,1},{0,2},{3,3}};
/*-----------------------------------------------------------------------
* FILE 1
*------------------------------------------------------------------------*/
/*
* Create a new file using H5F_ACC_TRUNC access,
* default file creation properties, and default file
* access properties.
*/
fileid1 = H5Fcreate(GRP_RECURSE1_EXT, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
grp1 = H5Gcreate2(fileid1, "/g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT);
status = FAIL;
goto out;
}
grp2 = H5Gcreate2(grp1, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT);
status = FAIL;
goto out;
}
grp3 = H5Gcreate2(grp2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp3 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT);
status = FAIL;
goto out;
}
grp4 = H5Gcreate2(grp3, "g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp4 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/*
* Describe the size of the array and create the data space for fixed
* size dataset.
*/
dimsf[0] = 4;
dimsf[1] = 2;
dataspace = H5Screate_simple(2, dimsf, NULL);
/*
* Define datatype for the data in the file.
* We will store little endian INT numbers.
*/
datatype = H5Tcopy(H5T_NATIVE_INT);
status = H5Tset_order(datatype, H5T_ORDER_LE);
/*---------------
* dset1
*/
/*
* Create a new dataset within the file using defined dataspace and
* datatype and default dataset creation properties.
*/
dset1 = H5Dcreate2(fileid1, GRP_R_DSETNAME1, datatype, dataspace,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data to the dataset using default transfer properties.
*/
status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1);
H5Dclose(dset1);
/*---------------
* dset1
*/
/*
* Create a new dataset within the file using defined dataspace and
* datatype and default dataset creation properties.
*/
dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data to the dataset using default transfer properties.
*/
status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1);
/*---------------
* dset2
*/
/*
* Create a new dataset within the fileid1 using defined dataspace and
* datatype and default dataset creation properties.
*/
dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data to the dataset using default transfer properties.
*/
status = H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2);
/*-----------------------------------------------------------------------
* Soft links
*------------------------------------------------------------------------*/
/*
* under '/' root
*/
/* link to dset1 */
status = H5Lcreate_soft(GRP_R_DSETNAME1, fileid1, "soft_dset1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", GRP_RECURSE1_EXT);
status = FAIL;
goto out;
}
H5Dclose(dset1);
H5Dclose(dset2);
H5Gclose(grp1);
H5Gclose(grp2);
H5Gclose(grp3);
H5Gclose(grp4);
/*-----------------------------------------------------------------------
* FILE 2-3
*------------------------------------------------------------------------*/
/* crate target file */
fileid4 = H5Fcreate(GRP_RECURSE2_EXT3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-----------------------------------------------
* Groups
*/
grp4 = H5Gcreate2(fileid4, "/g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp4 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT3);
status = FAIL;
goto out;
}
/*---------------
* dset2
*/
/*
* Create a new dataset within the fileid1 using defined dataspace and
* datatype and default dataset creation properties.
*/
dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data to the dataset using default transfer properties.
*/
status = H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2);
H5Gclose(grp4);
H5Dclose(dset2);
/*-----------------------------------------------------------------------
* FILE 2-2
*------------------------------------------------------------------------*/
/* crate target file */
fileid3 = H5Fcreate(GRP_RECURSE2_EXT2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-----------------------------------------------
* Groups
*/
grp2 = H5Gcreate2(fileid3, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT2);
status = FAIL;
goto out;
}
grp3 = H5Gcreate2(grp2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp3 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT2);
status = FAIL;
goto out;
}
/*---------------
* dset1
*/
/*
* Create a new dataset within the fileid1 using defined dataspace and
* datatype and default dataset creation properties.
*/
dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data to the dataset using default transfer properties.
*/
status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1);
/*-----------------------------------------------
* extlink to $GRP_RECURSE2_EXT3/g4
*/
status = H5Lcreate_external(GRP_RECURSE2_EXT3, "/g4", fileid3, "/g2/g3/g4", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", GRP_RECURSE2_EXT2);
status = FAIL;
goto out;
}
H5Dclose(dset1);
H5Gclose(grp2);
H5Gclose(grp3);
/*-----------------------------------------------------------------------
* FILE 2-1
*------------------------------------------------------------------------*/
/* crate target file */
fileid2 = H5Fcreate(GRP_RECURSE2_EXT1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-----------------------------------------------
* Groups
*/
grp1 = H5Gcreate2(fileid2, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (grp1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT);
status = FAIL;
goto out;
}
/*---------------
* dset1
*/
dset1 = H5Dcreate2(fileid2, GRP_R_DSETNAME1, datatype, dataspace,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data to the dataset using default transfer properties.
*/
status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1);
/*-----------------------------------------------------------------------
* Soft links
*------------------------------------------------------------------------*/
/*
* under '/' root
*/
/* link to dset1 */
status = H5Lcreate_soft(GRP_R_DSETNAME1, fileid2, "soft_dset1", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", GRP_RECURSE2_EXT1);
status = FAIL;
goto out;
}
/*-----------------------------------------------
* extlink to $GRP_RECURSE2_EXT2/g2
*/
status = H5Lcreate_external(GRP_RECURSE2_EXT2, "/g2", fileid2, "/g1/g2", H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", GRP_RECURSE2_EXT1);
status = FAIL;
goto out;
}
H5Gclose(grp1);
H5Dclose(dset1);
out:
/*
* Close/release resources.
*/
if(dataspace > 0)
H5Sclose(dataspace);
if(datatype > 0)
H5Tclose(datatype);
if(fileid1 > 0)
H5Fclose(fileid1);
if(fileid2 > 0)
H5Fclose(fileid2);
if(fileid3 > 0)
H5Fclose(fileid3);
if(fileid4 > 0)
H5Fclose(fileid4);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files for excluding obj.
* Same structure, same obj names
* Test : exclude obj with different value to verify the rest are same
*
* Programmer: Jonathan Kim (July, 21, 2010)
*
*-------------------------------------------------------------------------*/
static int test_exclude_obj1(const char *fname1, const char *fname2)
{
hid_t fid1=0;
hid_t fid2=0;
hid_t gid1=0;
hid_t gid2=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}};
int data2[4][2] = {{0,1},{2,3},{1,2},{3,4}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Group
*------------------------------------------------------------------------*/
/* file1 */
gid1 = H5Gcreate2(fid1, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
gid2 = H5Gcreate2(fid2, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid1,2,dims2,"dset2",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid1,2,dims2,"dset3",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid2,2,dims2,"dset3",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
if(gid1)
H5Gclose(gid1);
if(gid2)
H5Gclose(gid2);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files for excluding obj.
* different structure and name
* Test : exclude different objs to verify the rest are same
*
* Programmer: Jonathan Kim (July, 21, 2010)
*
*-------------------------------------------------------------------------*/
static int test_exclude_obj2(const char *fname1, const char *fname2)
{
hid_t fid1=0;
hid_t fid2=0;
hid_t gid1=0;
hid_t gid2=0;
hid_t gid3=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}};
int data2[4][2] = {{0,1},{2,3},{1,2},{3,4}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Group
*------------------------------------------------------------------------*/
/* file1 */
gid1 = H5Gcreate2(fid1, "group10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
gid2 = H5Gcreate2(fid2, "group10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/* subset name from group10 */
gid3 = H5Gcreate2(fid2, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid3 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(fid1,2,dims2,"dset10",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid1,2,dims2,"dset2",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = write_dset(fid2,2,dims2,"dset10",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
status = write_dset(gid3,2,dims2,"dset3",H5T_NATIVE_INT,data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
if(gid1)
H5Gclose(gid1);
if(gid2)
H5Gclose(gid2);
if(gid3)
H5Gclose(gid3);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files for excluding obj.
* Only one file contains unique objs. Common objs are same.
* Test : exclude unique objs to verify the rest are same
* - HDFFV-7837
*
* Programmer: Jonathan Kim (Mar, 19, 2012)
*
*-------------------------------------------------------------------------*/
static int test_exclude_obj3(const char *fname1, const char *fname2)
{
hid_t fid1=0;
hid_t fid2=0;
hid_t gid1=0;
hsize_t dims2[2] = {2,4};
int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}};
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Group
*------------------------------------------------------------------------*/
/* file1 */
gid1 = H5Gcreate2(fid1, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets
*------------------------------------------------------------------------*/
/* file1 */
status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
status = write_dset(gid1,2,dims2,"dset",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
if(gid1)
H5Gclose(gid1);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose: Create test files for multiple variable length string/string array
* along with fixed length string/string array types in
* a compound type dataset.
*
* Programmer: Jonathan Kim (Oct, 26, 2010)
*
*-------------------------------------------------------------------------*/
#define STR_RANK 1
#define VLEN_STR_DIM 1
#define FIXLEN_STR_SIZE 21
#define FIXLEN_STR_DIM 1
#define VLEN_STR_ARRY_DIM 3
#define FIXLEN_STR_ARRY_DIM 3
#define FIXLEN_STR_ARRY_SIZE 30
#define COMP_RANK 1
#define COMP_DIM 1
static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int is_file_new)
{
int i;
hid_t fid1 = -1; /* file id */
hid_t gid = -1;
/* compound1 datatype */
typedef struct comp1_t
{
char *str_vlen; /* vlen string */
char *str_vlen_repeat; /* vlen string */
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
} comp1_t;
/* compound2 datatype */
typedef struct comp2_t
{
char *str_vlen; /* vlen string */
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen_repeat; /* vlen string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
} comp2_t;
/* compound3 datatype */
typedef struct comp3_t
{
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen; /* vlen string */
char *str_vlen_repeat; /* vlen string */
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
} comp3_t;
/* compound4 datatype */
typedef struct comp4_t
{
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen; /* vlen string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen_repeat; /* vlen string */
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
} comp4_t;
/* compound5 datatype */
typedef struct comp5_t
{
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_vlen; /* vlen string */
char *str_vlen_repeat; /* vlen string */
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
} comp5_t;
/* compound6 datatype */
typedef struct comp6_t
{
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_vlen; /* vlen string */
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen_repeat; /* vlen string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
} comp6_t;
/* compound7 datatype */
typedef struct comp7_t
{
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen; /* vlen string */
char *str_vlen_repeat; /* vlen string */
} comp7_t;
/* compound8 datatype */
typedef struct comp8_t
{
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen; /* vlen string */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
char *str_vlen_repeat; /* vlen string */
} comp8_t;
/* compound9 datatype */
typedef struct comp9_t
{
char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */
char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */
char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */
char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */
int int_data1;
hobj_ref_t objref1; /* reference */
char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */
hobj_ref_t objref2; /* reference */
char *str_vlen; /* vlen string */
int int_data2;
char *str_vlen_repeat; /* vlen string */
hobj_ref_t objref3; /* reference */
int int_data3;
} comp9_t;
/* vlen string */
hid_t sid_vlen_str=0; /* dataspace ID */
hid_t tid_vlen_str=0; /* datatype ID */
const char vlen_str_buf[]= {
"Variable length string"
};
hsize_t dims_vlen_str[] = {VLEN_STR_DIM};
/* fixlen string */
hid_t sid_fixlen_str=0; /* dataspace ID */
hid_t tid_fixlen_str=0; /* datatype ID */
const char fixlen_str_buf[FIXLEN_STR_SIZE]= {
"Fixed length string"
};
hsize_t dims_fixlen_str[] = {FIXLEN_STR_DIM};
/* vlen string array */
hid_t sid_vlen_str_array=0; /* dataspace ID */
hid_t tid_vlen_str_array_pre=0; /* datatype ID */
hid_t tid_vlen_str_array=0; /* datatype ID */
const char *vlen_str_array_buf[VLEN_STR_ARRY_DIM]= {
"1 - Variable length string Array",
"2 - Testing variable length string array in compound type",
"3 - Four score and seven\n years ago our forefathers brought forth on this continent a new nation,"
};
hsize_t dims_vlen_str_array[] = {VLEN_STR_ARRY_DIM};
/* fixlen string array */
hid_t sid_fixlen_str_array=0; /* dataspace ID */
hid_t tid_fixlen_str_array_pre=0; /* datatype ID */
hid_t tid_fixlen_str_array=0; /* datatype ID */
const char *fixlen_str_array_buf[FIXLEN_STR_ARRY_DIM]= {
"1 - Fixed length string Array",
"2 - Fixed length string Array",
"3 - Fixed length string Array"
};
hsize_t dims_fixlen_str_array[] = {FIXLEN_STR_ARRY_DIM};
/*------------------------------------------
* compound dataset
*------------------------------------------*/
hid_t sid_comp=0; /* dataspace ID */
hid_t tid1_comp=0; /* datatype ID */
hid_t tid2_comp=0; /* datatype ID */
hid_t tid3_comp=0; /* datatype ID */
hid_t tid4_comp=0; /* datatype ID */
hid_t tid5_comp=0; /* datatype ID */
hid_t tid6_comp=0; /* datatype ID */
hid_t tid7_comp=0; /* datatype ID */
hid_t tid8_comp=0; /* datatype ID */
hid_t tid9_comp=0; /* datatype ID */
hid_t did_comp=0; /* dataset ID */
hsize_t dims_comp[] = {COMP_DIM};
herr_t status = SUCCEED;
/* make compound strings data */
comp1_t comp1_buf;
comp2_t comp2_buf;
comp3_t comp3_buf;
comp4_t comp4_buf;
comp5_t comp5_buf;
comp6_t comp6_buf;
comp7_t comp7_buf;
comp8_t comp8_buf;
comp9_t comp9_buf;
/* copy vlen string data to compound buffers */
comp1_buf.str_vlen = comp1_buf.str_vlen_repeat = vlen_str_buf;
comp2_buf.str_vlen = comp2_buf.str_vlen_repeat = vlen_str_buf;
comp3_buf.str_vlen = comp3_buf.str_vlen_repeat = vlen_str_buf;
comp4_buf.str_vlen = comp4_buf.str_vlen_repeat = vlen_str_buf;
comp5_buf.str_vlen = comp5_buf.str_vlen_repeat = vlen_str_buf;
comp6_buf.str_vlen = comp6_buf.str_vlen_repeat = vlen_str_buf;
comp7_buf.str_vlen = comp7_buf.str_vlen_repeat = vlen_str_buf;
comp8_buf.str_vlen = comp8_buf.str_vlen_repeat = vlen_str_buf;
comp9_buf.str_vlen = comp9_buf.str_vlen_repeat = vlen_str_buf;
/* copy fixlen string data to compound buffers */
HDstrcpy(comp1_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp1_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp2_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp2_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp3_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp3_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp3_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp3_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp4_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp4_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp5_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp5_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp6_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp6_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp7_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp7_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp8_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp8_buf.str_fixlen_repeat, fixlen_str_buf);
HDstrcpy(comp9_buf.str_fixlen, fixlen_str_buf);
HDstrcpy(comp9_buf.str_fixlen_repeat, fixlen_str_buf);
/* copy vlen string array data to compound buffers */
for (i=0; i < VLEN_STR_ARRY_DIM; i++)
{
comp1_buf.str_array_vlen[i] = comp1_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp2_buf.str_array_vlen[i] = comp2_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp3_buf.str_array_vlen[i] = comp3_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp4_buf.str_array_vlen[i] = comp4_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp5_buf.str_array_vlen[i] = comp5_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp6_buf.str_array_vlen[i] = comp6_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp7_buf.str_array_vlen[i] = comp7_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp8_buf.str_array_vlen[i] = comp8_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
comp9_buf.str_array_vlen[i] = comp9_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
}
/* copy fixlen string attay data to compound buffers */
for (i=0; i < FIXLEN_STR_ARRY_DIM; i++)
{
HDstrcpy(comp1_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp1_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp2_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp2_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp3_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp3_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp4_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp4_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp5_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp5_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp6_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp6_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp7_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp7_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp8_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp8_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
HDstrcpy(comp9_buf.str_array_fixlen[i], fixlen_str_array_buf[i]);
HDstrcpy(comp9_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]);
}
/* int data */
comp9_buf.int_data1 = 10;
comp9_buf.int_data2 = 20;
comp9_buf.int_data3 = 30;
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
if (is_file_new == 1)
{
fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1);
status = FAIL;
goto out;
}
}
else
{
fid1 = H5Fopen (fname1, H5F_ACC_RDWR, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fopen failed.\n", fname1);
status = FAIL;
goto out;
}
}
/*-----------------------------------------------------------------------
* Create group
*------------------------------------------------------------------------*/
gid = H5Gcreate2(fid1, grp_name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Variable length String1 - Create space and type
*------------------------------------------------------------------------*/
sid_vlen_str = H5Screate_simple(STR_RANK, dims_vlen_str, NULL);
if (sid_vlen_str < 0)
{
fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1);
status = FAIL;
goto out;
}
tid_vlen_str = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid_vlen_str, H5T_VARIABLE);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Fixed length String2 - Create space and type
*------------------------------------------------------------------------*/
sid_fixlen_str = H5Screate_simple(STR_RANK, dims_fixlen_str, NULL);
if (sid_fixlen_str < 0)
{
fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1);
status = FAIL;
goto out;
}
tid_fixlen_str = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid_fixlen_str, FIXLEN_STR_SIZE);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Fixed length String3 array - Create space and type
*------------------------------------------------------------------------*/
sid_vlen_str_array = H5Screate_simple(STR_RANK, dims_vlen_str_array, NULL);
if (sid_vlen_str_array < 0)
{
fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1);
status = FAIL;
goto out;
}
tid_vlen_str_array_pre = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid_vlen_str_array_pre, H5T_VARIABLE);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1);
status = FAIL;
goto out;
}
/* Create the array data type for the string array */
tid_vlen_str_array = H5Tarray_create2(tid_vlen_str_array_pre, COMP_RANK, dims_vlen_str_array);
if (tid_vlen_str_array < 0)
{
fprintf(stderr, "Error: %s> H5Tarray_create2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Variable length String4 array - Create space and type
*------------------------------------------------------------------------*/
sid_fixlen_str_array = H5Screate_simple(STR_RANK, dims_fixlen_str_array, NULL);
if (sid_fixlen_str_array < 0)
{
fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1);
status = FAIL;
goto out;
}
tid_fixlen_str_array_pre = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid_fixlen_str_array_pre, FIXLEN_STR_ARRY_SIZE);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1);
status = FAIL;
goto out;
}
/* Create the array data type for the string array */
tid_fixlen_str_array = H5Tarray_create2(tid_fixlen_str_array_pre, COMP_RANK, dims_fixlen_str_array);
if (tid_fixlen_str_array < 0)
{
fprintf(stderr, "Error: %s> H5Tarray_create2 failed.\n", fname1);
status = FAIL;
goto out;
}
/*-------------------------------------------------------------------------
* Compound dataset
*------------------------------------------------------------------------*/
sid_comp = H5Screate_simple(COMP_RANK, dims_comp, NULL);
if (sid_comp < 0)
{
fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1);
status = FAIL;
goto out;
}
tid1_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp1_t));
tid2_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp2_t));
tid3_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp3_t));
tid4_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp4_t));
tid5_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp5_t));
tid6_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp6_t));
tid7_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp7_t));
tid8_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp8_t));
tid9_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp9_t));
/* compound 1 */
H5Tinsert(tid1_comp, "VLEN_STR1", HOFFSET(comp1_t, str_vlen), tid_vlen_str );
H5Tinsert(tid1_comp, "VLEN_STR2", HOFFSET(comp1_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid1_comp, "FIXLEN_STR1", HOFFSET(comp1_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid1_comp, "FIXLEN_STR2", HOFFSET(comp1_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid1_comp, "VLEN_STR_ARRAY1", HOFFSET(comp1_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid1_comp, "VLEN_STR_ARRAY2", HOFFSET(comp1_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid1_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp1_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid1_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp1_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 2 */
H5Tinsert(tid2_comp, "VLEN_STR1", HOFFSET(comp2_t, str_vlen), tid_vlen_str );
H5Tinsert(tid2_comp, "VLEN_STR2", HOFFSET(comp2_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid2_comp, "FIXLEN_STR1", HOFFSET(comp2_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid2_comp, "FIXLEN_STR2", HOFFSET(comp2_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid2_comp, "VLEN_STR_ARRAY1", HOFFSET(comp2_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid2_comp, "VLEN_STR_ARRAY2", HOFFSET(comp2_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid2_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp2_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid2_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp2_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 3 */
H5Tinsert(tid3_comp, "VLEN_STR1", HOFFSET(comp3_t, str_vlen), tid_vlen_str );
H5Tinsert(tid3_comp, "VLEN_STR2", HOFFSET(comp3_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid3_comp, "FIXLEN_STR1", HOFFSET(comp3_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid3_comp, "FIXLEN_STR2", HOFFSET(comp3_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid3_comp, "VLEN_STR_ARRAY1", HOFFSET(comp3_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid3_comp, "VLEN_STR_ARRAY2", HOFFSET(comp3_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid3_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp3_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid3_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp3_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 4 */
H5Tinsert(tid4_comp, "VLEN_STR1", HOFFSET(comp4_t, str_vlen), tid_vlen_str );
H5Tinsert(tid4_comp, "VLEN_STR2", HOFFSET(comp4_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid4_comp, "FIXLEN_STR1", HOFFSET(comp4_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid4_comp, "FIXLEN_STR2", HOFFSET(comp4_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid4_comp, "VLEN_STR_ARRAY1", HOFFSET(comp4_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid4_comp, "VLEN_STR_ARRAY2", HOFFSET(comp4_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid4_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp4_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid4_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp4_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 5 */
H5Tinsert(tid5_comp, "VLEN_STR1", HOFFSET(comp5_t, str_vlen), tid_vlen_str );
H5Tinsert(tid5_comp, "VLEN_STR2", HOFFSET(comp5_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid5_comp, "FIXLEN_STR1", HOFFSET(comp5_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid5_comp, "FIXLEN_STR2", HOFFSET(comp5_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid5_comp, "VLEN_STR_ARRAY1", HOFFSET(comp5_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid5_comp, "VLEN_STR_ARRAY2", HOFFSET(comp5_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid5_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp5_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid5_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp5_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 6 */
H5Tinsert(tid6_comp, "VLEN_STR1", HOFFSET(comp6_t, str_vlen), tid_vlen_str );
H5Tinsert(tid6_comp, "VLEN_STR2", HOFFSET(comp6_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid6_comp, "FIXLEN_STR1", HOFFSET(comp6_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid6_comp, "FIXLEN_STR2", HOFFSET(comp6_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid6_comp, "VLEN_STR_ARRAY1", HOFFSET(comp6_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid6_comp, "VLEN_STR_ARRAY2", HOFFSET(comp6_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid6_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp6_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid6_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp6_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 7 */
H5Tinsert(tid7_comp, "VLEN_STR1", HOFFSET(comp7_t, str_vlen), tid_vlen_str );
H5Tinsert(tid7_comp, "VLEN_STR2", HOFFSET(comp7_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid7_comp, "FIXLEN_STR1", HOFFSET(comp7_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid7_comp, "FIXLEN_STR2", HOFFSET(comp7_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid7_comp, "VLEN_STR_ARRAY1", HOFFSET(comp7_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid7_comp, "VLEN_STR_ARRAY2", HOFFSET(comp7_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid7_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp7_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid7_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp7_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 8 */
H5Tinsert(tid8_comp, "VLEN_STR1", HOFFSET(comp8_t, str_vlen), tid_vlen_str );
H5Tinsert(tid8_comp, "VLEN_STR2", HOFFSET(comp8_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid8_comp, "FIXLEN_STR1", HOFFSET(comp8_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid8_comp, "FIXLEN_STR2", HOFFSET(comp8_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid8_comp, "VLEN_STR_ARRAY1", HOFFSET(comp8_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid8_comp, "VLEN_STR_ARRAY2", HOFFSET(comp8_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid8_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp8_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid8_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp8_t, str_fixlen_array_again), tid_fixlen_str_array);
/* compound 9 */
H5Tinsert(tid9_comp, "VLEN_STR1", HOFFSET(comp9_t, str_vlen), tid_vlen_str );
H5Tinsert(tid9_comp, "VLEN_STR2", HOFFSET(comp9_t, str_vlen_repeat), tid_vlen_str );
H5Tinsert(tid9_comp, "FIXLEN_STR1", HOFFSET(comp9_t, str_fixlen), tid_fixlen_str );
H5Tinsert(tid9_comp, "FIXLEN_STR2", HOFFSET(comp9_t, str_fixlen_repeat), tid_fixlen_str );
H5Tinsert(tid9_comp, "VLEN_STR_ARRAY1", HOFFSET(comp9_t, str_array_vlen), tid_vlen_str_array);
H5Tinsert(tid9_comp, "VLEN_STR_ARRAY2", HOFFSET(comp9_t, str_vlen_array_again), tid_vlen_str_array);
H5Tinsert(tid9_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp9_t, str_array_fixlen), tid_fixlen_str_array);
H5Tinsert(tid9_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp9_t, str_fixlen_array_again), tid_fixlen_str_array);
H5Tinsert(tid9_comp, "INT_DATA1", HOFFSET(comp9_t, int_data1), H5T_STD_I32LE);
H5Tinsert(tid9_comp, "INT_DATA2", HOFFSET(comp9_t, int_data2), H5T_STD_I32BE);
H5Tinsert(tid9_comp, "INT_DATA3", HOFFSET(comp9_t, int_data3), H5T_STD_I32LE);
H5Tinsert(tid9_comp, "OBJREF1", HOFFSET(comp9_t, objref1), H5T_STD_REF_OBJ);
H5Tinsert(tid9_comp, "OBJREF2", HOFFSET(comp9_t, objref2), H5T_STD_REF_OBJ);
H5Tinsert(tid9_comp, "OBJREF3", HOFFSET(comp9_t, objref3), H5T_STD_REF_OBJ);
/* Write data to compound 1 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset1", tid1_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid1_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp1_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 2 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset2", tid2_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid2_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp2_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 3 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset3", tid3_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid3_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp3_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 4 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset4", tid4_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid4_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp4_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 5 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset5", tid5_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid5_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp5_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 6 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset6", tid6_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid6_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp6_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 7 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset7", tid7_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid7_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp7_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 8 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset8", tid8_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did_comp, tid8_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp8_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
/* Write data to compound 9 dataset buffer */
did_comp = H5Dcreate2(gid, "Compound_dset9", tid9_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* obj references */
status=H5Rcreate(&(comp9_buf.objref1),gid,"Compound_dset2",H5R_OBJECT,(hid_t)-1);
status=H5Rcreate(&(comp9_buf.objref2),gid,"Compound_dset3",H5R_OBJECT,(hid_t)-1);
status=H5Rcreate(&(comp9_buf.objref3),gid,"Compound_dset4",H5R_OBJECT,(hid_t)-1);
status = H5Dwrite(did_comp, tid9_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp9_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1);
status = FAIL;
goto out;
}
H5Dclose(did_comp);
did_comp=0;
out:
/*-----------------------------------------------------------------------
* Close
*-----------------------------------------------------------------------*/
if(fid1 > 0)
H5Fclose(fid1);
if(gid > 0)
H5Gclose(gid);
/* vlen string */
if(tid_vlen_str > 0)
H5Tclose(tid_vlen_str);
if(sid_vlen_str > 0)
H5Sclose(sid_vlen_str);
/* fixed len string */
if(tid_fixlen_str > 0)
H5Tclose(tid_fixlen_str);
if(sid_fixlen_str > 0)
H5Sclose(sid_fixlen_str);
/* vlen string array */
if(tid_vlen_str_array_pre > 0)
H5Tclose(tid_vlen_str_array_pre);
if(tid_vlen_str_array > 0)
H5Tclose(tid_vlen_str_array);
if(sid_vlen_str_array > 0)
H5Sclose(sid_vlen_str_array);
/* fixed len string array */
if(tid_fixlen_str_array_pre > 0)
H5Tclose(tid_fixlen_str_array_pre);
if(tid_fixlen_str_array > 0)
H5Tclose(tid_fixlen_str_array);
if(sid_fixlen_str_array > 0)
H5Sclose(sid_fixlen_str_array);
/* compound */
if(tid1_comp > 0)
H5Tclose(tid1_comp);
if(tid2_comp > 0)
H5Tclose(tid2_comp);
if(tid3_comp > 0)
H5Tclose(tid3_comp);
if(tid4_comp > 0)
H5Tclose(tid4_comp);
if(tid5_comp > 0)
H5Tclose(tid5_comp);
if(tid6_comp > 0)
H5Tclose(tid6_comp);
if(tid7_comp > 0)
H5Tclose(tid7_comp);
if(tid8_comp > 0)
H5Tclose(tid8_comp);
if(tid9_comp > 0)
H5Tclose(tid9_comp);
if(did_comp > 0)
H5Dclose(did_comp);
if(sid_comp > 0)
H5Sclose(sid_comp);
return status;
} /* end test_comp_vlen_strings() */
/*-------------------------------------------------------------------------
*
* Purpose: Test diffs of enum values which may include invalid values.
*
* Programmer: Dana Robinson
*
*-------------------------------------------------------------------------*/
static int
test_enums(const char *fname)
{
hid_t fid = -1;
hid_t tid = -1;
int enum_val = -1;
/* The data in the two arrays cover the following cases:
*
* V = valid enum value, I = invalid enum value
*
* 0: I-I (same value)
* 1: V-I
* 2: I-V
* 3: V-V (same value)
* 4: I-I (different values) SKIPPED FOR NOW
* 5: V-V (different values)
*/
/* *** NOTE ***
*
* There is a bug in H5Dread() where invalid enum values are always
* returned as -1 so two different invalid enum values cannot be
* properly compared. Test 4 has been adjusted to pass here
* while we fix the issue.
*/
int data1[6] = {9, 0, 9, 0, 9, 0};
/*int data1[6] = {9, 0, 9, 0, 8, 0}; */
int data2[6] = {9, 9, 0, 0, 9, 1};
hsize_t dims = 6;
herr_t status = SUCCEED;
/*-----------------------------------------------------------------------
* Create the file
*---------------------------------------------------------------------*/
fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-----------------------------------------------------------------------
* Create enum types
*---------------------------------------------------------------------*/
tid = H5Tenum_create(H5T_NATIVE_INT);
enum_val = 0;
status = H5Tenum_insert(tid, "YIN", &enum_val);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tenum_insert failed.\n", fname);
status = FAIL;
goto out;
}
enum_val = 1;
status = H5Tenum_insert(tid, "YANG", &enum_val);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tenum_insert failed.\n", fname);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Create datasets containing enum data.
*---------------------------------------------------------------------*/
status = write_dset(fid, 1, &dims, "dset1", tid, data1);
if (status < 0)
{
fprintf(stderr, "Error: %s> write_dset failed.\n", fname);
status = FAIL;
goto out;
}
status = write_dset(fid, 1, &dims, "dset2", tid, data2);
if (status < 0)
{
fprintf(stderr, "Error: %s> write_dset failed.\n", fname);
status = FAIL;
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close
*---------------------------------------------------------------------*/
if(fid)
H5Fclose(fid);
if(tid)
H5Tclose(tid);
return status;
}
/*-------------------------------------------------------------------------
*
* Purpose:
* Create test files with dataset and attribute with container types
* (array, vlen) with multiple nested compound types.
*
* Function: test_comps_array()
* - type: compound->array->compound
*
* Function: test_comps_vlen()
* - type: compound->vlen->compound
*
* Function: test_comps_array_vlen()
* - type: compound->array->compound->vlen->compound
*
* Function: test_comps_vlen_arry()
* - type: compound->vlen->compound->array->compound
*
* Programmer: Jonathan Kim (Sep, 1, 2011)
*
*-------------------------------------------------------------------------*/
#define SDIM_DSET 2
#define SDIM_CMPD_ARRAY 2
static void test_comps_array (const char *fname, const char *dset, const char *attr,int diff, int is_file_new)
{
/* sub compound 2 */
typedef struct {
int i2;
float f2;
} cmpd2_t;
/* top compound 1 */
typedef struct {
int i1;
cmpd2_t cmpd2[SDIM_CMPD_ARRAY];
} cmpd1_t;
cmpd1_t wdata[SDIM_DSET]; /* dataset with compound1 */
hid_t fid; /* HDF5 File IDs */
hid_t did_dset; /* Dataset ID */
hid_t sid_dset; /* Dataset space ID */
hid_t tid_cmpd1; /* Compound1 type ID */
hid_t tid_arry1; /* Array type ID in compound1 */
hid_t tid_cmpd2; /* Compound2 type ID */
hid_t tid_attr;
hsize_t sdims_dset[] = {SDIM_DSET};
hsize_t sdims_cmpd_arry[] = {SDIM_CMPD_ARRAY};
int i,j;
herr_t ret; /* Generic return value */
/* Initialize array data to write */
for(i=0; i < SDIM_DSET; i++)
{
wdata[i].i1 = i;
for(j=0; j < SDIM_CMPD_ARRAY; j++)
{
wdata[i].cmpd2[j].i2 = i*10 + diff;
wdata[i].cmpd2[j].f2 = (float)(i*10.5F) + diff;
} /* end for */
}
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
if (is_file_new == 1)
fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
else
fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT);
/* -------------------------------
* Create a sub compound2 datatype */
tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t));
/* Insert integer field */
ret = H5Tinsert(tid_cmpd2, "int2", HOFFSET(cmpd2_t, i2), H5T_NATIVE_INT);
assert(ret >= 0);
/* Insert float field */
ret = H5Tinsert(tid_cmpd2, "float2", HOFFSET(cmpd2_t, f2), H5T_NATIVE_FLOAT);
assert(ret >= 0);
/*-----------------------------------
* Create a top compound1.
*/
tid_cmpd1 = H5Tcreate (H5T_COMPOUND, sizeof(cmpd1_t));
ret = H5Tinsert(tid_cmpd1, "int1", HOFFSET(cmpd1_t, i1), H5T_NATIVE_INT);
assert(ret >= 0);
/* Create an array datatype */
tid_arry1 = H5Tarray_create2(tid_cmpd2, 1, sdims_cmpd_arry);
/* insert the array */
ret = H5Tinsert(tid_cmpd1, "array_cmpd1", HOFFSET(cmpd1_t, cmpd2), tid_arry1);
assert(ret >= 0);
/* -------------------
* Create a dataset
*/
/* Create dataspace for datasets */
sid_dset = H5Screate_simple(1, sdims_dset, NULL);
did_dset = H5Dcreate2(fid, dset, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* Write dataset to disk */
ret = H5Dwrite(did_dset, tid_cmpd1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
assert(ret >= 0);
/*-----------------------------------
* Create an attribute in root group
*/
tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT);
assert(tid_attr > 0);
ret = H5Awrite(tid_attr, tid_cmpd1, wdata);
assert(ret >= 0);
/* ----------------
* Close Dataset */
ret = H5Aclose(tid_attr);
assert(ret >= 0);
ret = H5Tclose(tid_arry1);
assert(ret >= 0);
ret = H5Dclose(did_dset);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd1);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd2);
assert(ret >= 0);
ret = H5Sclose(sid_dset);
assert(ret >= 0);
ret = H5Fclose(fid);
assert(ret >= 0);
}
static void test_comps_vlen (const char * fname, const char *dset, const char *attr, int diff, int is_file_new)
{
/* sub compound 2 */
typedef struct {
int i2;
float f2;
} cmpd2_t;
/* top compound 1 */
typedef struct {
int i1;
hvl_t vl; /* VL information for compound2 */
} cmpd1_t;
cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */
hid_t fid; /* HDF5 File ID */
hid_t did_dset; /* dataset ID */
hid_t sid_dset; /* dataset space ID */
hid_t tid_attr;
hid_t tid_cmpd2; /* compound2 type ID */
hid_t tid_cmpd1; /* compound1 type ID */
hid_t tid_cmpd1_vlen;
hsize_t sdims_dset[] = {SDIM_DSET};
unsigned i,j; /* counting variables */
herr_t ret; /* Generic return value */
/* Allocate and initialize VL data to write */
for(i=0; i<SDIM_DSET; i++)
{
wdata[i].i1 = i;
wdata[i].vl.p = HDmalloc((i+1)*sizeof(cmpd2_t));
wdata[i].vl.len = i+1;
for(j=0; j<(i+1); j++)
{
((cmpd2_t *)wdata[i].vl.p)[j].i2 = i*10 + diff;
((cmpd2_t *)wdata[i].vl.p)[j].f2 = (float)(i*10.5F) + diff;
} /* end for */
} /* end for */
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
if (is_file_new == 1)
fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
else
fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT);
/* -----------------------------
* Create sub compound2 type */
tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t));
/* Insert fields */
ret = H5Tinsert(tid_cmpd2, "int2", HOFFSET(cmpd2_t, i2), H5T_NATIVE_INT);
assert(ret >= 0);
ret = H5Tinsert(tid_cmpd2, "float2", HOFFSET(cmpd2_t, f2), H5T_NATIVE_FLOAT);
assert(ret >= 0);
/* ---------------------------
* Create top compound1 type */
tid_cmpd1 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd1_t));
/* Insert fields */
ret = H5Tinsert(tid_cmpd1, "int1", HOFFSET(cmpd1_t, i1), H5T_NATIVE_INT);
assert(ret >= 0);
/* Create a VL datatype */
tid_cmpd1_vlen = H5Tvlen_create(tid_cmpd2);
ret = H5Tinsert(tid_cmpd1, "vlen_cmpd1", HOFFSET(cmpd1_t, vl), tid_cmpd1_vlen);
assert(ret >= 0);
/* -------------------------------
* Create dataset with compound1
*/
/* Create dataspace for dataset */
sid_dset = H5Screate_simple(1, sdims_dset, NULL);
/* Create a dataset */
did_dset = H5Dcreate2(fid, dset, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* Write dataset to disk */
ret = H5Dwrite(did_dset, tid_cmpd1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
assert(ret >= 0);
/*-----------------------------------
* Create an attribute in root group
*/
tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT);
assert(tid_attr > 0);
ret = H5Awrite(tid_attr, tid_cmpd1, wdata);
assert(ret >= 0);
/* Reclaim the write VL data */
ret = H5Dvlen_reclaim(tid_cmpd1, sid_dset, H5P_DEFAULT, wdata);
assert(ret >= 0);
/* ----------------
* Close IDs */
ret = H5Aclose(tid_attr);
assert(ret >= 0);
ret = H5Dclose(did_dset);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd2);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd1);
assert(ret >= 0);
ret = H5Sclose(sid_dset);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd1_vlen);
assert(ret >= 0);
ret = H5Fclose(fid);
assert(ret >= 0);
}
static void test_comps_array_vlen (const char * fname, const char *dset,const char *attr, int diff, int is_file_new)
{
typedef struct {
int i3;
float f3;
} cmpd3_t;
typedef struct { /* Typedef for compound datatype */
int i2;
hvl_t vl; /* VL information to write */
} cmpd2_t;
typedef struct {
int i1;
cmpd2_t cmpd2[SDIM_CMPD_ARRAY];
} cmpd1_t;
cmpd1_t wdata[SDIM_DSET]; /* Information to write */
hid_t fid; /* HDF5 File IDs */
hid_t did_dset; /* Dataset ID */
hid_t sid_dset; /* Dataspace ID */
hid_t tid_attr;
hid_t tid_cmpd1; /* Compound1 Datatype ID */
hid_t tid_arry1; /* Array Datatype ID */
hid_t tid_cmpd2; /* Compound2 Datatype ID */
hid_t tid_cmpd2_vlen;
hid_t tid_cmpd3; /* Compound3 Datatype ID */
hsize_t sdims_dset[] = {SDIM_DSET};
hsize_t sdims_arry[] = {SDIM_CMPD_ARRAY};
int i,j,k; /* counting variables */
herr_t ret; /* Generic return value */
/* Initialize array data to write in compound1 */
for(i=0; i < SDIM_DSET; i++)
{
wdata[i].i1 = i;
/* Allocate and initialize VL data to write in compound2 */
for(j=0; j < SDIM_CMPD_ARRAY; j++)
{
wdata[i].cmpd2[j].i2 = j*10;
wdata[i].cmpd2[j].vl.p = HDmalloc((j+1)*sizeof(cmpd3_t));
wdata[i].cmpd2[j].vl.len = j+1;
for(k=0; k<(j+1); k++)
{
/* Initialize data of compound3 */
((cmpd3_t *)wdata[i].cmpd2[j].vl.p)[k].i3 = j*10 + diff;
((cmpd3_t *)wdata[i].cmpd2[j].vl.p)[k].f3 = (float)(j*10.5F) + diff;
} /* end for */
} /* end for */
}
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
if (is_file_new == 1)
fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
else
fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT);
/* Create dataspace for datasets */
sid_dset = H5Screate_simple(1, sdims_dset, NULL);
/*-------------------------------------
* Create a sub compound3 datatype */
tid_cmpd3 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd3_t));
/* Insert integer field */
ret = H5Tinsert(tid_cmpd3, "int", HOFFSET(cmpd3_t, i3), H5T_NATIVE_INT);
assert(ret >= 0);
/* Insert float field */
ret = H5Tinsert(tid_cmpd3, "float", HOFFSET(cmpd3_t, f3), H5T_NATIVE_FLOAT);
assert(ret >= 0);
/*-------------------------------------
* Create a sub compound2 datatype */
tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t));
/* Insert integer field */
ret = H5Tinsert(tid_cmpd2, "int", HOFFSET(cmpd2_t, i2), H5T_NATIVE_INT);
assert(ret >= 0);
/* Create a VL datatype */
tid_cmpd2_vlen = H5Tvlen_create(tid_cmpd3);
ret = H5Tinsert(tid_cmpd2, "vlen", HOFFSET(cmpd2_t, vl), tid_cmpd2_vlen);
assert(ret >= 0);
/*-----------------------------------
* Create a top compound1 datatype for dataset.
*/
tid_cmpd1 = H5Tcreate (H5T_COMPOUND, sizeof(cmpd1_t));
/* Create an array datatype */
tid_arry1 = H5Tarray_create2(tid_cmpd2, 1, sdims_arry);
/* insert the array */
H5Tinsert(tid_cmpd1, "array_comp", HOFFSET(cmpd1_t, cmpd2), tid_arry1);
/* ----------------------
* Create a dataset */
did_dset = H5Dcreate2(fid, dset, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* Write dataset to disk */
ret = H5Dwrite(did_dset, tid_cmpd1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
assert(ret >= 0);
/*-----------------------------------
* Create an attribute in root group
*/
tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT);
assert(tid_attr > 0);
ret = H5Awrite(tid_attr, tid_cmpd1, wdata);
assert(ret >= 0);
/* Reclaim the write VL data */
ret = H5Dvlen_reclaim(tid_cmpd1, sid_dset, H5P_DEFAULT, wdata);
assert(ret >= 0);
/*-------------------
* Close IDs */
ret = H5Aclose(tid_attr);
assert(ret >= 0);
ret = H5Tclose(tid_arry1);
assert(ret >= 0);
ret = H5Dclose(did_dset);
assert(ret >= 0);
ret = H5Sclose(sid_dset);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd3);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd2);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd2_vlen);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd1);
assert(ret >= 0);
ret = H5Fclose(fid);
assert(ret >= 0);
}
static void test_comps_vlen_arry (const char * fname, const char *dset, const char *attr, int diff, int is_file_new)
{
/* sub compound 3 */
typedef struct {
int i3;
float f3;
} cmpd3_t;
/* sub compound 2 */
typedef struct {
int i2;
cmpd3_t cmpd3[SDIM_CMPD_ARRAY];
} cmpd2_t;
/* top compound 1 */
typedef struct {
int i1;
hvl_t vl; /* VL information for compound2 */
} cmpd1_t;
cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */
hid_t fid; /* HDF5 File ID */
hid_t did_dset; /* dataset ID */
hid_t sid_dset; /* dataset space ID */
hid_t tid_attr;
hid_t tid_cmpd3; /* compound3 type ID */
hid_t tid_cmpd2; /* compound2 type ID */
hid_t tid_cmpd2_arry;
hid_t tid_cmpd1; /* compound1 type ID */
hid_t tid_cmpd1_vlen;
hsize_t sdims_dset[] = {SDIM_DSET};
hsize_t sdims_cmpd_arry[] = {SDIM_CMPD_ARRAY};
unsigned i,j,k; /* counting variables */
herr_t ret; /* Generic return value */
/* Allocate and initialize VL data to write */
for(i=0; i<SDIM_DSET; i++)
{
/* compound 1 data */
wdata[i].i1 = i;
wdata[i].vl.p = HDmalloc((i+1)*sizeof(cmpd2_t));
wdata[i].vl.len = i+1;
for(j=0; j<(i+1); j++)
{
/* compound2 data */
((cmpd2_t *)wdata[i].vl.p)[j].i2 = i*10 + diff;
for (k=0; k < SDIM_CMPD_ARRAY; k++)
{
/* compound 3 data */
((cmpd2_t *)(wdata[i].vl.p))[j].cmpd3[k].i3 = k*10.5F + diff;
((cmpd2_t *)(wdata[i].vl.p))[j].cmpd3[k].f3 = (float)(k*10.5F) + diff;
}
} /* end for */
} /* end for */
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
if (is_file_new == 1)
fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
else
fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT);
/* -----------------------------
* Create sub compound3 type */
tid_cmpd3 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd3_t));
/* Insert fields */
ret = H5Tinsert(tid_cmpd3, "int3", HOFFSET(cmpd3_t, i3), H5T_NATIVE_INT);
assert(ret >= 0);
ret = H5Tinsert(tid_cmpd3, "float3", HOFFSET(cmpd3_t, f3), H5T_NATIVE_FLOAT);
assert(ret >= 0);
/* -----------------------------
* Create sub compound2 type */
tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t));
ret = H5Tinsert(tid_cmpd2, "int2", HOFFSET(cmpd2_t, i2), H5T_NATIVE_INT);
assert(ret >= 0);
tid_cmpd2_arry = H5Tarray_create2(tid_cmpd3, 1, sdims_cmpd_arry);
ret = H5Tinsert(tid_cmpd2, "array_cmpd2", HOFFSET(cmpd2_t, cmpd3), tid_cmpd2_arry);
assert(ret >= 0);
/* ---------------------------
* Create top compound1 type
*/
/* Create a VL datatype */
tid_cmpd1 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd1_t));
/* Insert fields */
ret = H5Tinsert(tid_cmpd1, "int1", HOFFSET(cmpd1_t, i1), H5T_NATIVE_INT);
assert(ret >= 0);
tid_cmpd1_vlen = H5Tvlen_create(tid_cmpd2);
ret = H5Tinsert(tid_cmpd1, "vlen_cmpd1", HOFFSET(cmpd1_t, vl), tid_cmpd1_vlen);
assert(ret >= 0);
/* -------------------------------
* Create dataset with compound1
*/
/* Create dataspace for dataset */
sid_dset = H5Screate_simple(1, sdims_dset, NULL);
/* Create a dataset */
did_dset = H5Dcreate2(fid, dset, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* Write dataset to disk */
ret = H5Dwrite(did_dset, tid_cmpd1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
assert(ret >= 0);
/*-----------------------------------
* Create an attribute in root group
*/
tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT);
assert(tid_attr > 0);
ret = H5Awrite(tid_attr, tid_cmpd1, wdata);
assert(ret >= 0);
/* Reclaim the write VL data */
ret = H5Dvlen_reclaim(tid_cmpd1, sid_dset, H5P_DEFAULT, wdata);
assert(ret >= 0);
/* ----------------
* Close IDs */
ret = H5Aclose(tid_attr);
assert(ret >= 0);
ret = H5Dclose(did_dset);
assert(ret >= 0);
ret = H5Sclose(sid_dset);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd3);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd2_arry);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd2);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd1_vlen);
assert(ret >= 0);
ret = H5Tclose(tid_cmpd1);
assert(ret >= 0);
ret = H5Fclose(fid);
assert(ret >= 0);
}
/*-------------------------------------------------------------------------
* Function: test_data_nocomparables
*
* Purpose:
* Create test files with non-comparable dataset and attributes with
* comparable datasets and attributes. All the comparables should display
* differences.
*
*-------------------------------------------------------------------------*/
#define DIM_ARRY 3
static void test_data_nocomparables (const char * fname, int make_diffs)
{
hid_t fid=0;
hid_t gid1=0;
hid_t gid2=0;
hid_t did1=0;
hid_t did2=0;
hid_t sid1=0;
hid_t tid_dset1=0;
hid_t tid_attr1=0;
hsize_t dims1_1[1] = {DIM_ARRY};
hsize_t dims1_2[1] = {DIM_ARRY+1};
hsize_t dims2[2] = {DIM_ARRY, 1};
int data1[DIM_ARRY] = {0,0,0};
int data2[DIM_ARRY] = {1,1,1};
int data3[DIM_ARRY+1] = {1,1,1,1};
int data1_dim2[DIM_ARRY][1] = {{0},{0},{0}};
int rank_attr;
char data1_str[DIM_ARRY][STR_SIZE]= {"ab","cd","ef"};
herr_t status = SUCCEED;
void *dset_data_ptr1=NULL;
void *dset_data_ptr2=NULL;
void *dset_data_ptr3=NULL;
void *attr_data_ptr1=NULL;
void *attr_data_ptr2=NULL;
void *attr_data_ptr3=NULL;
void *attr_data_ptr4=NULL;
void *attr2_dim_ptr=NULL;
void *attr3_dim_ptr=NULL;
/* init */
tid_dset1=H5Tcopy(H5T_NATIVE_INT);
dset_data_ptr1=(int*)&data1;
dset_data_ptr2=(int*)&data1;
dset_data_ptr3=(int*)&data1;
tid_attr1=H5Tcopy(H5T_NATIVE_INT);
attr_data_ptr1=(int*)&data1;
attr_data_ptr3=(int*)&data1;
attr_data_ptr4=(int*)&data1;
attr2_dim_ptr=(hsize_t*)&dims1_1;
attr3_dim_ptr=(hsize_t*)&dims1_1;
rank_attr=1;
if (make_diffs)
{
/* ------------
* group1 */
tid_dset1=H5Tcopy(H5T_C_S1);
H5Tset_size(tid_dset1, (size_t)STR_SIZE);
dset_data_ptr1=(char*)&data1_str;
dset_data_ptr2=(int*)&data2;
attr_data_ptr1=(int*)&data2;
/* -----------
* group2
*/
dset_data_ptr3=(int*)&data2;
/* dset1/attr1 */
tid_attr1=H5Tcopy(H5T_C_S1);
H5Tset_size(tid_attr1, (size_t)STR_SIZE);
attr_data_ptr2=(char*)&data1_str;
/* dset1/attr2 */
attr2_dim_ptr=(hsize_t*)&dims1_2;
/* dset1/attr3 */
attr_data_ptr3=(int*)&data1_dim2;
attr3_dim_ptr=(hsize_t*)&dims2;
rank_attr=2;
/* dset1/attr4 */
attr_data_ptr4=(int*)&data2;
}
/*-----------------------------------------------------------------------
* Create file(s)
*------------------------------------------------------------------------*/
fid = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fid < 0)
{
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Groups
*------------------------------------------------------------------------*/
gid1 = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname);
status = FAIL;
goto out;
}
gid2 = H5Gcreate2(fid, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* Datasets in /g1
*------------------------------------------------------------------------*/
if((sid1 = H5Screate_simple(1, dims1_1, NULL)) < 0)
goto out;
/* dset1 */
if((did1 = H5Dcreate2(gid1, "dset1", tid_dset1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
{
fprintf(stderr, "Error: %s> H5Dcreate2 failed.\n", "dset1");
status = FAIL;
goto out;
}
if(H5Dwrite(did1, tid_dset1, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data_ptr1) < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", "dset1");
status = FAIL;
goto out;
}
write_attr(did1,1,dims1_1,"attr", H5T_NATIVE_INT, attr_data_ptr1);
/* dset2 */
status = write_dset(gid1, 1, dims1_1,"dset2", H5T_NATIVE_INT, dset_data_ptr2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname);
goto out;
}
/*-----------------------------------------------------------------------
* Datasets in /g2
*------------------------------------------------------------------------*/
/* ---------
* dset1 */
if((did2 = H5Dcreate2(gid2, "dset1", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
{
fprintf(stderr, "Error: %s> H5Dcreate2 failed.\n", "dset1");
status = FAIL;
goto out;
}
if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data_ptr3) < 0)
{
fprintf(stderr, "Error: %s> H5Dwrite failed.\n", "dset1");
status = FAIL;
goto out;
}
/* attr1 - non-compatible : different type */
write_attr(did2,1,dims1_1,"attr1", tid_attr1, attr_data_ptr2);
/* attr2 - non-compatible : same rank, different dimention */
write_attr(did2,1,(hsize_t *)attr2_dim_ptr,"attr2", H5T_NATIVE_INT, data3);
/* attr3 - non-compatible : different rank */
write_attr(did2, rank_attr,(hsize_t *)attr3_dim_ptr,"attr3", H5T_NATIVE_INT, attr_data_ptr3);
/* attr4 - compatible : different data values */
write_attr(did2,1,dims1_1,"attr4", H5T_NATIVE_INT, attr_data_ptr4);
/*----------
* dset2 */
status = write_dset(gid2, 1, dims1_1,"dset2", H5T_NATIVE_INT, dset_data_ptr3);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname);
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close IDs
*-----------------------------------------------------------------------*/
if(fid)
H5Fclose(fid);
if(gid1)
H5Gclose(gid1);
if(gid2)
H5Gclose(gid2);
if(did1)
H5Dclose(did1);
if(did2)
H5Dclose(did2);
if(sid1)
H5Sclose(sid1);
if(tid_dset1)
H5Tclose(tid_dset1);
if(tid_attr1)
H5Tclose(tid_attr1);
}
/*-------------------------------------------------------------------------
* Function: test_objs_nocomparables
*
* Purpose:
* Create test files with common objects (same name) but different object
* types.
* h5diff should show non-comparable output from these common objects.
*-------------------------------------------------------------------------*/
static void test_objs_nocomparables(const char *fname1, const char *fname2)
{
herr_t status = SUCCEED;
hid_t fid1=0;
hid_t fid2=0;
hid_t topgid1=0;
hid_t topgid2=0;
hid_t gid1=0;
hid_t did1=0;
hid_t tid1=0;
hid_t gid2=0;
hid_t did2=0;
hid_t tid2=0;
hsize_t dims[1] = {DIM_ARRY};
int data1[DIM_ARRY] = {1,1,1};
int data2[DIM_ARRY] = {2,2,2};
/*-----------------------------------------------------------------------
* Open file(s) to add objects
*------------------------------------------------------------------------*/
/* file1 */
fid1 = H5Fopen (fname1, H5F_ACC_RDWR, H5P_DEFAULT);
if (fid1 < 0)
{
fprintf(stderr, "Error: %s> H5Fopen failed.\n", fname1);
status = FAIL;
goto out;
}
/* file2 */
fid2 = H5Fopen (fname2, H5F_ACC_RDWR, H5P_DEFAULT);
if (fid2 < 0)
{
fprintf(stderr, "Error: %s> H5Fopen failed.\n", fname2);
status = FAIL;
goto out;
}
/*-----------------------------------------------------------------------
* in file1 : add member objects
*------------------------------------------------------------------------*/
/* parent group */
topgid1 = H5Gcreate2(fid1, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (topgid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/* dataset */
status = write_dset(topgid1, 1, dims,"obj1", H5T_NATIVE_INT, data1);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname1);
goto out;
}
/* group */
gid1 = H5Gcreate2(topgid1, "obj2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid1 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1);
status = FAIL;
goto out;
}
/* committed type */
tid1 = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(topgid1, "obj3", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname1);
goto out;
}
/*-----------------------------------------------------------------------
* in file2 : add member objects
*------------------------------------------------------------------------*/
/* parent group */
topgid2 = H5Gcreate2(fid2, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (topgid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/* group */
gid2 = H5Gcreate2(topgid2, "obj1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid2 < 0)
{
fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2);
status = FAIL;
goto out;
}
/* committed type */
tid2 = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(topgid2, "obj2", tid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname2);
goto out;
}
/* dataset */
status = write_dset(topgid2, 1, dims,"obj3", H5T_NATIVE_INT, data2);
if (status == FAIL)
{
fprintf(stderr, "Error: %s> write_dset failed\n", fname2);
goto out;
}
out:
/*-----------------------------------------------------------------------
* Close IDs
*-----------------------------------------------------------------------*/
if(fid1)
H5Fclose(fid1);
if(fid2)
H5Fclose(fid2);
if(topgid1)
H5Gclose(topgid1);
if(topgid2)
H5Gclose(topgid2);
if(did1)
H5Dclose(did1);
if(did2)
H5Dclose(did2);
if(gid1)
H5Gclose(gid1);
if(gid2)
H5Gclose(gid2);
if(tid1)
H5Tclose(tid1);
if(tid2)
H5Tclose(tid2);
}
/*-------------------------------------------------------------------------
* Function: write_attr_in
*
* Purpose: write attributes in LOC_ID (dataset, group, named datatype)
*
*-------------------------------------------------------------------------
*/
static
void write_attr_in(hid_t loc_id,
const char* dset_name, /* for saving reference to dataset*/
hid_t fid,
int make_diffs /* flag to modify data buffers */)
{
/* Compound datatype */
typedef struct s_t
{
char a;
double b;
} s_t;
typedef enum
{
RED,
GREEN
} e_t;
hid_t aid;
hid_t sid;
hid_t tid;
herr_t status;
int val, i, j, k, l, n;
float f;
/* create 1D attributes with dimension [2], 2 elements */
hsize_t dims[1]={2};
char buf1[2][STR_SIZE]= {"ab","de"}; /* string */
char *buf1a[2]; /* VL string */
char buf2[2]= {1,2}; /* bitfield, opaque */
s_t buf3[2]= {{1,2.0F},{3,4.0F}}; /* compound */
hobj_ref_t buf4[2]; /* reference */
e_t buf45[2]= {RED,RED}; /* enum */
hvl_t buf5[2]; /* vlen */
hsize_t dimarray[1]={3}; /* array dimension */
int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
int buf7[2]= {1,2}; /* integer */
float buf8[2]= {1.0F, 2.0F}; /* float */
/* create 2D attributes with dimension [3][2], 6 elements */
hsize_t dims2[2]={3,2};
char buf12[3][2][STR_SIZE]= {{"ab","cd"},{"ef","gh"},{"ij","kl"}}; /* string */
char *buf12a[3][2]; /* VL string */
char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
s_t buf32[6]= {{1,2.0F},{3,4.0F},{5,6.0F},{7,8.0F},{9,10.0F},{11,12.0F}}; /* compound */
hobj_ref_t buf42[3][2]; /* reference */
e_t buf452[3][2]; /* enum */
hvl_t buf52[3][2]; /* vlen */
int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
float buf82[3][2]= {{1.0F,2.0F},{3.0F,4.0F},{5.0F,6.0F}}; /* float */
/* create 3D attributes with dimension [4][3][2], 24 elements */
hsize_t dims3[3]={4,3,2};
char buf13[4][3][2][STR_SIZE]= {{{"ab","cd"},{"ef","gh"},{"ij","kl"}},
{{"mn","pq"},{"rs","tu"},{"vw","xz"}},
{{"AB","CD"},{"EF","GH"},{"IJ","KL"}},
{{"MN","PQ"},{"RS","TU"},{"VW","XZ"}}}; /* string */
char *buf13a[4][3][2]; /* VL string */
char buf23[4][3][2]; /* bitfield, opaque */
s_t buf33[4][3][2]; /* compound */
hobj_ref_t buf43[4][3][2]; /* reference */
e_t buf453[4][3][2]; /* enum */
hvl_t buf53[4][3][2]; /* vlen */
int buf63[24][3]; /* array */
int buf73[4][3][2]; /* integer */
float buf83[4][3][2]; /* float */
/*-------------------------------------------------------------------------
* 1D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
for (j=0; j<2; j++)
{
buf1[i][j]='z';
}
}
}
/*
buf1[2][2]= {"ab","de"};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <string> and <string>
position string of </g1> string of </g1> difference
------------------------------------------------------------
[ 0 ] a z
[ 0 ] b z
[ 1 ] d z
[ 1 ] e z
*/
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, (size_t)STR_SIZE);
write_attr(loc_id,1,dims,"string",tid,buf1);
status = H5Tclose(tid);
for (i=0; i<2; i++)
buf1a[i]=buf1[i];
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, H5T_VARIABLE);
write_attr(loc_id,1,dims,"VLstring",tid,buf1a);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
buf2[i]=buf2[1]=0;
}
/*
buf2[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <bitfield> and <bitfield>
position bitfield of </g1> bitfield of </g1> difference
position opaque of </g1> opaque of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
tid = H5Tcopy(H5T_STD_B8LE);
write_attr(loc_id,1,dims,"bitfield",tid,buf2);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
/*
buf2[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <opaque> and <opaque>
position opaque of </g1> opaque of </g1> difference
position opaque of </g1> opaque of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
tid = H5Tcreate(H5T_OPAQUE, (size_t)1);
status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */
write_attr(loc_id,1,dims,"opaque",tid,buf2);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf3[i].a=0; buf3[i].b=0;
}
}
/*
buf3[2]= {{1,2},{3,4}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <compound> and <compound>
position compound of </g1> compound of </g1> difference
------------------------------------------------------------
[ 0 ] 1 5 4
[ 0 ] 2 5 3
[ 1 ] 3 5 2
[ 1 ] 4 5 1
*/
tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
write_attr(loc_id,1,dims,"compound",tid,buf3);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_REFERENCE (H5R_OBJECT object reference)
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,(hid_t)-1);
status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,(hid_t)-1);
write_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4);
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf45[i]=GREEN;
}
}
/*
buf45[2]= {RED,RED};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <enum> and <enum>
position enum of </g1> enum of </g1> difference
------------------------------------------------------------
[ 0 ] RED GREEN
[ 1 ] RED GREEN
*/
tid = H5Tcreate(H5T_ENUM, sizeof(e_t));
H5Tenum_insert(tid, "RED", (val = 0, &val));
H5Tenum_insert(tid, "GREEN", (val = 1, &val));
write_attr(loc_id,1,dims,"enum",tid,buf45);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
buf5[0].len = 1;
buf5[0].p = HDmalloc( 1 * sizeof(int));
((int *)buf5[0].p)[0]=1;
buf5[1].len = 2;
buf5[1].p = HDmalloc( 2 * sizeof(int));
((int *)buf5[1].p)[0]=2;
((int *)buf5[1].p)[1]=3;
if (make_diffs)
{
((int *)buf5[0].p)[0]=0;
((int *)buf5[1].p)[0]=0;
((int *)buf5[1].p)[1]=0;
}
/*
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
position vlen of </g1> vlen of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
[ 1 ] 3 0 3
*/
sid = H5Screate_simple(1, dims, NULL);
tid = H5Tvlen_create(H5T_NATIVE_INT);
aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite(aid, tid, buf5);
assert(status >= 0);
status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5);
assert(status >= 0);
status = H5Aclose(aid);
status = H5Tclose(tid);
status = H5Sclose(sid);
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<3; j++)
{
buf6[i][j]=0;
}
}
/*
buf6[2][3]= {{1,2,3},{4,5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <array> and <array>
position array of </g1> array of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 0 ] 2 0 2
[ 0 ] 3 0 3
[ 1 ] 4 0 4
[ 1 ] 5 0 5
[ 1 ] 6 0 6
*/
tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray);
write_attr(loc_id, 1, dims, "array", tid, buf6);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf7[i]=0;
buf8[i]=0;
}
}
/*
buf7[2]= {1,2};
buf8[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
position integer of </g1> integer of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
position float of </g1> float of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
write_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
write_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
/*-------------------------------------------------------------------------
* 2D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<3; i++)
for (j=0; j<2; j++)
for (k=0; k<2; k++)
buf12[i][j][k]='z';
}
/*
buf12[6][2]= {"ab","cd","ef","gh","ij","kl"};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <string2D> and <string2D>
position string2D of </g1> string2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] a z
[ 0 0 ] b z
[ 0 1 ] c z
[ 0 1 ] d z
[ 1 0 ] e z
[ 1 0 ] f z
[ 1 1 ] g z
[ 1 1 ] h z
[ 2 0 ] i z
[ 2 0 ] j z
[ 2 1 ] k z
[ 2 1 ] l z
*/
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, (size_t)STR_SIZE);
write_attr(loc_id,2,dims2,"string2D",tid,buf12);
status = H5Tclose(tid);
for (i=0; i<3; i++)
{
for (j=0; j<2; j++)
{
buf12a[i][j]=buf12[i][j];
}
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, H5T_VARIABLE);
write_attr(loc_id,2,dims2,"VLstring2D",tid,buf12a);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf22,0,sizeof buf22);
}
/*
buf22[3][2]= {{1,2},{3,4},{5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <bitfield2D> and <bitfield2D>
position bitfield2D of </g1> bitfield2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
tid = H5Tcopy(H5T_STD_B8LE);
write_attr(loc_id,2,dims2,"bitfield2D",tid,buf22);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
/*
buf22[3][2]= {{1,2},{3,4},{5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <opaque2D> and <opaque2D>
position opaque2D of </g1> opaque2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
tid = H5Tcreate(H5T_OPAQUE, (size_t)1);
status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */
write_attr(loc_id,2,dims2,"opaque2D",tid,buf22);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf32,0,sizeof buf32);
}
/*
buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <opaque2D> and <opaque2D>
position opaque2D of </g1> opaque2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
write_attr(loc_id,2,dims2,"compound2D",tid,buf32);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_REFERENCE (H5R_OBJECT object reference)
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 3; i++) {
for (j = 0; j < 2; j++) {
status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,(hid_t)-1);
}
}
write_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42);
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
for (i=0; i<3; i++)
{
for (j=0; j<2; j++)
{
if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
}
}
/*
Attribute: <enum2D> and <enum2D>
position enum2D of </g1> enum2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] RED GREEN
[ 0 1 ] RED GREEN
[ 1 0 ] RED GREEN
[ 1 1 ] RED GREEN
[ 2 0 ] RED GREEN
[ 2 1 ] RED GREEN
*/
tid = H5Tcreate(H5T_ENUM, sizeof(e_t));
H5Tenum_insert(tid, "RED", (val = 0, &val));
H5Tenum_insert(tid, "GREEN", (val = 1, &val));
write_attr(loc_id,2,dims2,"enum2D",tid,buf452);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n=0;
for (i = 0; i < 3; i++) {
for (j = 0; j < 2; j++) {
buf52[i][j].p = HDmalloc((i + 1) * sizeof(int));
buf52[i][j].len = i + 1;
for (l = 0; l < i + 1; l++)
if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
else ((int *)buf52[i][j].p)[l] = n++;
}
}
/*
position vlen2D of </g1> vlen2D of </g1> difference
------------------------------------------------------------
[ 0 1 ] 1 0 1
[ 1 0 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 1 1 ] 5 0 5
[ 2 0 ] 6 0 6
[ 2 0 ] 7 0 7
[ 2 0 ] 8 0 8
[ 2 1 ] 9 0 9
[ 2 1 ] 10 0 10
[ 2 1 ] 11 0 11
*/
sid = H5Screate_simple(2, dims2, NULL);
tid = H5Tvlen_create(H5T_NATIVE_INT);
aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite(aid, tid, buf52);
assert(status >= 0);
status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52);
assert(status >= 0);
status = H5Aclose(aid);
status = H5Tclose(tid);
status = H5Sclose(sid);
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf62,0,sizeof buf62);
}
/*
buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <array2D> and <array2D>
position array2D of </g1> array2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 0 ] 2 0 2
[ 0 0 ] 3 0 3
[ 0 1 ] 4 0 4
[ 0 1 ] 5 0 5
[ 0 1 ] 6 0 6
[ 1 0 ] 7 0 7
[ 1 0 ] 8 0 8
[ 1 0 ] 9 0 9
[ 1 1 ] 10 0 10
[ 1 1 ] 11 0 11
[ 1 1 ] 12 0 12
[ 2 0 ] 13 0 13
[ 2 0 ] 14 0 14
[ 2 0 ] 15 0 15
[ 2 1 ] 16 0 16
[ 2 1 ] 17 0 17
[ 2 1 ] 18 0 18
*/
tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray);
write_attr(loc_id, 2, dims2, "array2D", tid, buf62);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf72,0,sizeof buf72);
memset(buf82,0,sizeof buf82);
}
/*
Attribute: <integer2D> and <integer2D>
position integer2D of </g1> integer2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
6 differences found
Attribute: <float2D> and <float2D>
position float2D of </g1> float2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
write_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72);
write_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
/*-------------------------------------------------------------------------
* 3D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<4; i++)
for (j=0; j<3; j++)
for (k=0; k<2; k++)
for (l=0; l<2; l++)
buf13[i][j][k][l]='z';
}
/*
buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
"rs","tu","vw","xz","AB","CD","EF","GH",
"IJ","KL","MN","PQ","RS","TU","VW","XZ"};
Attribute: <string3D> and <string3D>
position string3D of </g1> string3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] a z
[ 0 0 0 ] b z
[ 0 0 1 ] c z
[ 0 0 1 ] d z
[ 0 1 0 ] e z
[ 0 1 0 ] f z
[ 0 1 1 ] g z
[ 0 1 1 ] h z
[ 0 2 0 ] i z
[ 0 2 0 ] j z
[ 0 2 1 ] k z
[ 0 2 1 ] l z
[ 1 0 0 ] m z
[ 1 0 0 ] n z
[ 1 0 1 ] p z
[ 1 0 1 ] q z
[ 1 1 0 ] r z
[ 1 1 0 ] s z
[ 1 1 1 ] t z
[ 1 1 1 ] u z
[ 1 2 0 ] v z
[ 1 2 0 ] w z
[ 1 2 1 ] x z
[ 2 0 0 ] A z
[ 2 0 0 ] B z
[ 2 0 1 ] C z
[ 2 0 1 ] D z
[ 2 1 0 ] E z
[ 2 1 0 ] F z
[ 2 1 1 ] G z
[ 2 1 1 ] H z
[ 2 2 0 ] I z
[ 2 2 0 ] J z
[ 2 2 1 ] K z
[ 2 2 1 ] L z
[ 3 0 0 ] M z
[ 3 0 0 ] N z
[ 3 0 1 ] P z
[ 3 0 1 ] Q z
[ 3 1 0 ] R z
[ 3 1 0 ] S z
[ 3 1 1 ] T z
[ 3 1 1 ] U z
[ 3 2 0 ] V z
[ 3 2 0 ] W z
[ 3 2 1 ] X z
[ 3 2 1 ] Z z
*/
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, (size_t)STR_SIZE);
write_attr(loc_id,3,dims3,"string3D",tid,buf13);
status = H5Tclose(tid);
for (i=0; i<4; i++)
{
for (j=0; j<3; j++)
{
for (k=0; k<2; k++)
{
buf13a[i][j][k]=buf13[i][j][k];
}
}
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, H5T_VARIABLE);
write_attr(loc_id,3,dims3,"VLstring3D",tid,buf13a);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) buf23[i][j][k]=0;
else buf23[i][j][k]=n++;
}
}
}
/*
position bitfield3D of </g1> bitfield3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 1 ] 2 0 2
[ 0 1 0 ] 3 0 3
[ 0 1 1 ] 4 0 4
[ 0 2 0 ] 5 0 5
[ 0 2 1 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 1 0 ] 9 0 9
[ 1 1 1 ] 10 0 10
[ 1 2 0 ] 11 0 11
[ 1 2 1 ] 12 0 12
[ 2 0 0 ] 13 0 13
[ 2 0 1 ] 14 0 14
[ 2 1 0 ] 15 0 15
[ 2 1 1 ] 16 0 16
[ 2 2 0 ] 17 0 17
[ 2 2 1 ] 18 0 18
[ 3 0 0 ] 19 0 19
[ 3 0 1 ] 20 0 20
[ 3 1 0 ] 21 0 21
[ 3 1 1 ] 22 0 22
[ 3 2 0 ] 23 0 23
[ 3 2 1 ] 24 0 24
*/
tid = H5Tcopy(H5T_STD_B8LE);
write_attr(loc_id,3,dims3,"bitfield3D",tid,buf23);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
tid = H5Tcreate(H5T_OPAQUE, (size_t)1);
status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */
write_attr(loc_id,3,dims3,"opaque3D",tid,buf23);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) {
buf33[i][j][k].a=0;
buf33[i][j][k].b=0.0F;
}
else {
buf33[i][j][k].a=n++;
buf33[i][j][k].b=n++;
}
}
}
}
/*position compound3D of </g1> compound3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 0 ] 2 0 2
[ 0 0 1 ] 3 0 3
[ 0 0 1 ] 4 0 4
[ 0 1 0 ] 5 0 5
[ 0 1 0 ] 6 0 6
[ 0 1 1 ] 7 0 7
[ 0 1 1 ] 8 0 8
[ 0 2 0 ] 9 0 9
[ 0 2 0 ] 10 0 10
[ 0 2 1 ] 11 0 11
[ 0 2 1 ] 12 0 12
[ 1 0 0 ] 13 0 13
[ 1 0 0 ] 14 0 14
[ 1 0 1 ] 15 0 15
[ 1 0 1 ] 16 0 16
[ 1 1 0 ] 17 0 17
[ 1 1 0 ] 18 0 18
[ 1 1 1 ] 19 0 19
[ 1 1 1 ] 20 0 20
[ 1 2 0 ] 21 0 21
[ 1 2 0 ] 22 0 22
[ 1 2 1 ] 23 0 23
[ 1 2 1 ] 24 0 24
[ 2 0 0 ] 25 0 25
[ 2 0 0 ] 26 0 26
[ 2 0 1 ] 27 0 27
[ 2 0 1 ] 28 0 28
[ 2 1 0 ] 29 0 29
[ 2 1 0 ] 30 0 30
[ 2 1 1 ] 31 0 31
[ 2 1 1 ] 32 0 32
[ 2 2 0 ] 33 0 33
[ 2 2 0 ] 34 0 34
[ 2 2 1 ] 35 0 35
[ 2 2 1 ] 36 0 36
[ 3 0 0 ] 37 0 37
[ 3 0 0 ] 38 0 38
[ 3 0 1 ] 39 0 39
[ 3 0 1 ] 40 0 40
[ 3 1 0 ] 41 0 41
[ 3 1 0 ] 42 0 42
[ 3 1 1 ] 43 0 43
[ 3 1 1 ] 44 0 44
[ 3 2 0 ] 45 0 45
[ 3 2 0 ] 46 0 46
[ 3 2 1 ] 47 0 47
[ 3 2 1 ] 48 0 48
*/
tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
write_attr(loc_id,3,dims3,"compound3D",tid,buf33);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_REFERENCE (H5R_OBJECT object reference)
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++)
status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,(hid_t)-1);
}
}
write_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43);
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN;
}
}
}
/*
position enum3D of </g1> enum3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] GREEN RED
[ 0 0 1 ] GREEN RED
[ 0 1 0 ] GREEN RED
[ 0 1 1 ] GREEN RED
[ 0 2 0 ] GREEN RED
[ 0 2 1 ] GREEN RED
[ 1 0 0 ] GREEN RED
[ 1 0 1 ] GREEN RED
[ 1 1 0 ] GREEN RED
[ 1 1 1 ] GREEN RED
[ 1 2 0 ] GREEN RED
[ 1 2 1 ] GREEN RED
[ 2 0 0 ] GREEN RED
[ 2 0 1 ] GREEN RED
[ 2 1 0 ] GREEN RED
[ 2 1 1 ] GREEN RED
[ 2 2 0 ] GREEN RED
[ 2 2 1 ] GREEN RED
[ 3 0 0 ] GREEN RED
[ 3 0 1 ] GREEN RED
[ 3 1 0 ] GREEN RED
[ 3 1 1 ] GREEN RED
[ 3 2 0 ] GREEN RED
[ 3 2 1 ] GREEN RED
*/
tid = H5Tcreate(H5T_ENUM, sizeof(e_t));
H5Tenum_insert(tid, "RED", (val = 0, &val));
H5Tenum_insert(tid, "GREEN", (val = 1, &val));
write_attr(loc_id,3,dims3,"enum3D",tid,buf453);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n=0;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int));
buf53[i][j][k].len = i + 1;
for (l = 0; l < i + 1; l++)
if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0;
else ((int *)buf53[i][j][k].p)[l] = n++;
}
}
}
/*
position vlen3D of </g1> vlen3D of </g1> difference
------------------------------------------------------------
[ 0 0 1 ] 1 0 1
[ 0 1 0 ] 2 0 2
[ 0 1 1 ] 3 0 3
[ 0 2 0 ] 4 0 4
[ 0 2 1 ] 5 0 5
[ 1 0 0 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 0 1 ] 9 0 9
[ 1 1 0 ] 10 0 10
etc
*/
sid = H5Screate_simple(3, dims3, NULL);
tid = H5Tvlen_create(H5T_NATIVE_INT);
aid = H5Acreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite(aid, tid, buf53);
assert(status >= 0);
status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53);
assert(status >= 0);
status = H5Aclose(aid);
status = H5Tclose(tid);
status = H5Sclose(sid);
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 24; i++) {
for (j = 0; j < (int)dimarray[0]; j++) {
if (make_diffs) buf63[i][j]=0;
else buf63[i][j]=n++;
}
}
/*
position array3D of </g1> array3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 0 ] 2 0 2
[ 0 0 0 ] 3 0 3
[ 0 0 1 ] 4 0 4
[ 0 0 1 ] 5 0 5
[ 0 0 1 ] 6 0 6
[ 0 1 0 ] 7 0 7
etc
*/
tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray);
write_attr(loc_id, 3, dims3, "array3D", tid, buf63);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
n=1; f=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) {
buf73[i][j][k]=0;
buf83[i][j][k]=0.0F;
}
else {
buf73[i][j][k]=n++;
buf83[i][j][k]=f++;
}
}
}
}
/*
position integer3D of </g1> integer3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 1 ] 2 0 2
[ 0 1 0 ] 3 0 3
[ 0 1 1 ] 4 0 4
[ 0 2 0 ] 5 0 5
[ 0 2 1 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 1 0 ] 9 0 9
[ 1 1 1 ] 10 0 10
etc
*/
write_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
write_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
}
/*-------------------------------------------------------------------------
* Function: write_dset_in
*
* Purpose: write datasets in LOC_ID
*
*-------------------------------------------------------------------------
*/
static
void write_dset_in(hid_t loc_id,
const char* dset_name, /* for saving reference to dataset*/
hid_t fid,
int make_diffs /* flag to modify data buffers */)
{
/* Compound datatype */
typedef struct s_t
{
char a;
double b;
} s_t;
typedef enum
{
RED,
GREEN
} e_t;
hid_t did;
hid_t sid;
hid_t tid;
hid_t dcpl;
herr_t status;
int val, i, j, k, l, n;
float f;
int fillvalue=2;
int scalar_data = 2;
/* create 1D attributes with dimension [2], 2 elements */
hsize_t dims[1]={2};
char buf1[2][STR_SIZE]= {"ab","de"}; /* string */
char *buf1a[2]; /* VL string */
char buf2[2]= {1,2}; /* bitfield, opaque */
s_t buf3[2]= {{1,2.0F},{3,4.0F}}; /* compound */
hobj_ref_t buf4[2]; /* reference */
e_t buf45[2]= {RED,GREEN}; /* enum */
hvl_t buf5[2]; /* vlen */
hsize_t dimarray[1]={3}; /* array dimension */
int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
int buf7[2]= {1,2}; /* integer */
float buf8[2]= {1.0F,2.0F}; /* float */
/* create 2D attributes with dimension [3][2], 6 elements */
hsize_t dims2[2]={3,2};
char buf12[3][2][STR_SIZE]= {{"ab","cd"},{"ef","gh"},{"ij","kl"}}; /* string */
char *buf12a[3][2]; /* VL string */
char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
s_t buf32[6]= {{1,2.0F},{3,4.0F},{5,6.0F},{7,8.0F},{9,10.0F},{11,12.0F}}; /* compound */
hobj_ref_t buf42[3][2]; /* reference */
hvl_t buf52[3][2]; /* vlen */
int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
float buf82[3][2]= {{1.0F,2.0F},{3.0F,4.0F},{5.0F,6.0F}}; /* float */
/* create 3D attributes with dimension [4][3][2], 24 elements */
hsize_t dims3[3]={4,3,2};
char buf13[4][3][2][STR_SIZE]= {{{"ab","cd"},{"ef","gh"},{"ij","kl"}},
{{"mn","pq"},{"rs","tu"},{"vw","xz"}},
{{"AB","CD"},{"EF","GH"},{"IJ","KL"}},
{{"MN","PQ"},{"RS","TU"},{"VW","XZ"}}}; /* string */
char *buf13a[4][3][2]; /* VL string */
char buf23[4][3][2]; /* bitfield, opaque */
s_t buf33[4][3][2]; /* compound */
hobj_ref_t buf43[4][3][2]; /* reference */
hvl_t buf53[4][3][2]; /* vlen */
int buf63[24][3]; /* array */
int buf73[4][3][2]; /* integer */
float buf83[4][3][2]; /* float */
/*-------------------------------------------------------------------------
* H5S_SCALAR
*-------------------------------------------------------------------------
*/
if ( make_diffs )
{
scalar_data = 1;
}
/* create a space */
sid = H5Screate(H5S_SCALAR);
/* create a dataset */
did = H5Dcreate2(loc_id, "scalar", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* write */
H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &scalar_data);
/* close */
H5Dclose(did);
H5Sclose(sid);
/*-------------------------------------------------------------------------
* 1D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<2; j++)
buf1[i][j]='z';
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid,(size_t)STR_SIZE);
write_dset(loc_id,1,dims,"string",tid,buf1);
status = H5Tclose(tid);
for (i=0; i<2; i++)
{
buf1a[i]=buf1[i];
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, H5T_VARIABLE);
write_dset(loc_id,1,dims,"VLstring",tid,buf1a);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
buf2[i]=buf2[1]=0;
}
tid = H5Tcopy(H5T_STD_B8LE);
write_dset(loc_id,1,dims,"bitfield",tid,buf2);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf3[i].a=0; buf3[i].b=0;
}
}
tid = H5Tcreate(H5T_OPAQUE, (size_t)1);
status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */
write_dset(loc_id,1,dims,"opaque",tid,buf2);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf45[i]=GREEN;
}
}
tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
write_dset(loc_id,1,dims,"compound",tid,buf3);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_REFERENCE (H5R_OBJECT object reference)
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,(hid_t)-1);
status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,(hid_t)-1);
write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4);
}
/*-------------------------------------------------------------------------
* H5T_REFERENCE (H5R_DATASET_REGION dataset region reference)
*-------------------------------------------------------------------------
*/
gen_datareg(fid,make_diffs);
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
tid = H5Tcreate(H5T_ENUM, sizeof(e_t));
H5Tenum_insert(tid, "RED", (val = 0, &val));
H5Tenum_insert(tid, "GREEN", (val = 1, &val));
write_dset(loc_id,1,dims,"enum",tid,buf45);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
buf5[0].len = 1;
buf5[0].p = HDmalloc( 1 * sizeof(int));
((int *)buf5[0].p)[0]=1;
buf5[1].len = 2;
buf5[1].p = HDmalloc( 2 * sizeof(int));
((int *)buf5[1].p)[0]=2;
((int *)buf5[1].p)[1]=3;
if(make_diffs) {
((int *)buf5[0].p)[0] = 0;
((int *)buf5[1].p)[0] = 0;
((int *)buf5[1].p)[1]=0;
}
sid = H5Screate_simple(1, dims, NULL);
tid = H5Tvlen_create(H5T_NATIVE_INT);
did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5);
HDassert(status >= 0);
status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5);
HDassert(status >= 0);
status = H5Dclose(did);
status = H5Tclose(tid);
status = H5Sclose(sid);
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<3; j++)
{
buf6[i][j]=0;
}
}
tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray);
write_dset(loc_id, 1, dims, "array", tid, buf6);
status = H5Tclose(tid);
{
double *dbuf; /* information to write */
hid_t did; /* dataset ID */
hid_t sid; /* dataspace ID */
hid_t tid; /* datatype ID */
size_t size;
hsize_t sdims[] = {1};
hsize_t tdims[] = {H5TOOLS_MALLOCSIZE / sizeof(double) + 1};
int j;
/* allocate and initialize array data to write */
size = ( H5TOOLS_MALLOCSIZE / sizeof(double) + 1 ) * sizeof(double);
dbuf = (double *)HDmalloc( size );
for( j = 0; j < H5TOOLS_MALLOCSIZE / sizeof(double) + 1; j++)
dbuf[j] = j;
if (make_diffs)
{
dbuf[5] = 0;
dbuf[6] = 0;
}
/* create a type larger than H5TOOLS_MALLOCSIZE */
tid = H5Tarray_create2(H5T_NATIVE_DOUBLE, 1, tdims);
size = H5Tget_size(tid);
sid = H5Screate_simple(1, sdims, NULL);
did = H5Dcreate2(loc_id, "arrayd", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
#if defined(WRITE_ARRAY)
H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, dbuf);
#endif
/* close */
H5Dclose(did);
H5Tclose(tid);
H5Sclose(sid);
HDfree( dbuf );
}
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf7[i]=0;
buf8[i]=0;
}
}
write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
/*-------------------------------------------------------------------------
* 2D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<3; i++)
for (j=0; j<2; j++)
for (k=0; k<2; k++)
buf12[i][j][k]='z';
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid,(size_t)STR_SIZE);
write_dset(loc_id,2,dims2,"string2D",tid,buf12);
status = H5Tclose(tid);
for (i=0; i<3; i++)
{
for (j=0; j<2; j++)
{
buf12a[i][j]=buf12[i][j];
}
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, H5T_VARIABLE);
write_dset(loc_id,2,dims2,"VLstring2D",tid,buf12a);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf22,0,sizeof buf22);
}
tid = H5Tcopy(H5T_STD_B8LE);
write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
tid = H5Tcreate(H5T_OPAQUE, (size_t)1);
status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */
write_dset(loc_id,2,dims2,"opaque2D",tid,buf22);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf32,0,sizeof buf32);
}
tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
write_dset(loc_id,2,dims2,"compound2D",tid,buf32);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_REFERENCE (H5R_OBJECT object reference)
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 3; i++) {
for (j = 0; j < 2; j++) {
status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,(hid_t)-1);
}
}
write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42);
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
tid = H5Tcreate(H5T_ENUM, sizeof(e_t));
H5Tenum_insert(tid, "RED", (val = 0, &val));
H5Tenum_insert(tid, "GREEN", (val = 1, &val));
write_dset(loc_id,2,dims2,"enum2D",tid,0);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n = 0;
for(i = 0; i < 3; i++)
{
for(j = 0; j < 2; j++)
{
buf52[i][j].p = HDmalloc((i + 1) * sizeof(int));
buf52[i][j].len = i + 1;
for(l = 0; l < i + 1; l++)
{
if (make_diffs)
((int *)buf52[i][j].p)[l] = 0;
else
((int *)buf52[i][j].p)[l] = n++;
}
}
}
sid = H5Screate_simple(2, dims2, NULL);
tid = H5Tvlen_create(H5T_NATIVE_INT);
did = H5Dcreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf52);
assert(status >= 0);
status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52);
assert(status >= 0);
status = H5Dclose(did);
status = H5Tclose(tid);
status = H5Sclose(sid);
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf62,0,sizeof buf62);
}
tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray);
write_dset(loc_id, 2, dims2, "array2D", tid, buf62);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_INTEGER, write a fill value
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf72, 0, sizeof buf72);
memset(buf82, 0, sizeof buf82);
}
dcpl = H5Pcreate(H5P_DATASET_CREATE);
status = H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue);
sid = H5Screate_simple(2, dims2, NULL);
did = H5Dcreate2(loc_id, "integer2D", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT);
status = H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf72);
status = H5Pclose(dcpl);
status = H5Dclose(did);
status = H5Sclose(sid);
/*-------------------------------------------------------------------------
* H5T_FLOAT
*-------------------------------------------------------------------------
*/
write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
/*-------------------------------------------------------------------------
* 3D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<4; i++)
for (j=0; j<3; j++)
for (k=0; k<2; k++)
for (l=0; l<2; l++)
buf13[i][j][k][l]='z';
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid,(size_t)STR_SIZE);
write_dset(loc_id,3,dims3,"string3D",tid,buf13);
status = H5Tclose(tid);
for (i=0; i<4; i++)
{
for (j=0; j<3; j++)
{
for (k=0; k<2; k++)
{
buf13a[i][j][k]=buf13[i][j][k];
}
}
}
tid = H5Tcopy(H5T_C_S1);
status = H5Tset_size(tid, H5T_VARIABLE);
write_dset(loc_id,3,dims3,"VLstring3D",tid,buf13a);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs)
buf23[i][j][k]=0;
else buf23[i][j][k]=n++;
}
}
}
tid = H5Tcopy(H5T_STD_B8LE);
write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
tid = H5Tcreate(H5T_OPAQUE, (size_t)1);
status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */
write_dset(loc_id,3,dims3,"opaque3D",tid,buf23);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs)
{
buf33[i][j][k].a=0;
buf33[i][j][k].b=0.0F;
}
else {
buf33[i][j][k].a=n++;
buf33[i][j][k].b=n++;
}
}
}
}
tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
write_dset(loc_id,3,dims3,"compound3D",tid,buf33);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_REFERENCE (H5R_OBJECT object reference)
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++)
status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,(hid_t)-1);
}
}
write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43);
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
tid = H5Tcreate(H5T_ENUM, sizeof(e_t));
H5Tenum_insert(tid, "RED", (val = 0, &val));
H5Tenum_insert(tid, "GREEN", (val = 1, &val));
write_dset(loc_id,3,dims3,"enum3D",tid,0);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n=0;
for(i = 0; i < 4; i++)
{
for(j = 0; j < 3; j++)
{
for(k = 0; k < 2; k++)
{
buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int));
buf53[i][j][k].len = i + 1;
for(l = 0; l < i + 1; l++)
{
if(make_diffs)
((int *)buf53[i][j][k].p)[l] = 0;
else
((int *)buf53[i][j][k].p)[l] = n++;
}
}
}
}
sid = H5Screate_simple(3, dims3, NULL);
tid = H5Tvlen_create(H5T_NATIVE_INT);
did = H5Dcreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf53);
assert(status >= 0);
status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53);
assert(status >= 0);
status = H5Dclose(did);
status = H5Tclose(tid);
status = H5Sclose(sid);
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 24; i++) {
for (j = 0; j < (int)dimarray[0]; j++) {
if (make_diffs) buf63[i][j]=0;
else buf63[i][j]=n++;
}
}
tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray);
write_dset(loc_id, 3, dims3, "array3D", tid, buf63);
status = H5Tclose(tid);
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
n=1; f=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) {
buf73[i][j][k]=0;
buf83[i][j][k]=0.0F;
}
else {
buf73[i][j][k]=n++;
buf83[i][j][k]=f++;
}
}
}
}
write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
}
/*-------------------------------------------------------------------------
* Function: gen_datareg
*
* Purpose: generate a dataset region and its reference
*
* Date: April 19, 2006
*
*-------------------------------------------------------------------------
*/
static
void gen_datareg(hid_t fid,
int make_diffs /* flag to modify data buffers */)
{
/* data dataset */
hid_t did1; /* dataset ID */
hid_t sid1; /* dataspace ID */
hsize_t dims1[2] = {10,10};/* dimensions */
int *buf; /* dataset buffer */
/* reference dataset */
hid_t did2; /* dataset ID */
hid_t sid2; /* dataspace ID */
hsize_t dims2[] = {2}; /* 2 references */
hdset_reg_ref_t *rbuf; /* buffer for write the references */
hsize_t start[10]; /* starting location of hyperslab */
hsize_t count[10]; /* element count of hyperslab */
hsize_t coord[5][2]; /* coordinates for point selection */
herr_t status;
int i;
/* allocate the buffer for write the references */
rbuf = (hdset_reg_ref_t *)HDcalloc((size_t)2, sizeof(hdset_reg_ref_t));
/* allocate the buffer for write the data dataset */
buf = (int *)HDmalloc(10 * 10 * sizeof(int));
for(i = 0; i < 10 * 10; i++)
buf[i] = i;
/* create the data dataset */
sid1 = H5Screate_simple(2, dims1, NULL);
did1 = H5Dcreate2(fid, "dsetref", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
HDassert(status >= 0);
/* create the reference dataset */
sid2 = H5Screate_simple(1, dims2, NULL);
did2 = H5Dcreate2(fid, "refreg", H5T_STD_REF_DSETREG, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* create the references */
/* select hyperslab for first reference */
start[0] = 2; start[1] = 2;
count[0] = 6; count[1] = 6;
if(make_diffs) {
start[0] = 0; start[1] = 0;
count[0] = 3; count[1] = 3;
}
status = H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL);
HDassert(status >= 0);
H5Sget_select_npoints(sid1);
/* store first dataset region */
status = H5Rcreate(&rbuf[0], fid, "dsetref", H5R_DATASET_REGION, sid1);
HDassert(status >= 0);
/* select sequence of five points for second reference */
coord[0][0]=6; coord[0][1]=9;
coord[1][0]=2; coord[1][1]=2;
coord[2][0]=8; coord[2][1]=4;
coord[3][0]=1; coord[3][1]=6;
coord[4][0]=2; coord[4][1]=8;
if (make_diffs)
{
coord[1][0]=3; coord[1][1]=3;
coord[3][0]=2; coord[3][1]=5;
coord[4][0]=1; coord[4][1]=7;
}
H5Sselect_elements(sid1,H5S_SELECT_SET,(size_t)5,(const hsize_t *)coord);
H5Sget_select_npoints(sid1);
/* store second dataset region */
H5Rcreate(&rbuf[1],fid,"dsetref",H5R_DATASET_REGION,sid1);
/* write */
status = H5Dwrite(did2,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf);
HDassert(status >= 0);
/* close, free memory buffers */
status = H5Dclose(did1);
HDassert(status >= 0);
status = H5Sclose(sid1);
HDassert(status >= 0);
status = H5Dclose(did2);
HDassert(status >= 0);
status = H5Sclose(sid2);
HDassert(status >= 0);
HDfree(rbuf);
HDfree(buf);
}
/*-------------------------------------------------------------------------
* Function: test_hyperslab
*
* Purpose: test diff by hyperslabs. create a dataset with 1GB dimensions
* by iterating trough 1KB hyperslabs
*
*-------------------------------------------------------------------------
*/
static
int test_hyperslab(const char *fname,
int make_diffs /* flag to modify data buffers */)
{
hid_t did=-1;
hid_t fid=-1;
hid_t f_sid=-1;
hid_t m_sid=-1;
hid_t tid=-1;
hid_t dcpl=-1;
hsize_t dims[1]={GBLL}; /* dataset dimensions */
hsize_t hs_size[1]={GBLL/(1024*1024)}; /* hyperslab dimensions */
hsize_t chunk_dims[1]={GBLL/1024}; /* chunk dimensions */
hsize_t hs_start[1];
size_t size;
size_t nelmts=(size_t)GBLL/(1024*1024); /* elements in each hyperslab */
char fillvalue=-1;
char *buf=NULL;
int i, j, s;
char c;
/* create */
fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_fill_value(dcpl, H5T_NATIVE_CHAR, &fillvalue) < 0)
goto out;
if(H5Pset_chunk(dcpl, 1, chunk_dims) < 0)
goto out;
if((f_sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if((did = H5Dcreate2(fid, "big", H5T_NATIVE_CHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0)
goto out;
if((tid = H5Dget_type(did)) < 0)
goto out;
if((size = H5Tget_size(tid)) <= 0)
goto out;
/* create a evenly divided buffer from 0 to 127 */
buf = (char *)HDmalloc((size_t)(nelmts * size));
s = 1024 * 1024 / 127;
for(i = 0, j = 0, c = 0; i < 1024 * 1024; j++, i++) {
if(j == s) {
c++;
j = 0;
}
/* set the hyperslab values */
HDmemset(buf, c, nelmts);
/* make a different hyperslab at this position */
if(make_diffs && i == 512 * 512)
HDmemset(buf, 0, nelmts);
hs_start[0] = i * GBLL/(1024*1024);
if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0)
goto out;
/* write only one hyperslab */
if ( i==512*512)
{
if (H5Dwrite (did,H5T_NATIVE_CHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0)
goto out;
}
}
HDfree(buf);
buf=NULL;
/* close */
if(H5Sclose(f_sid) < 0)
goto out;
if(H5Sclose(m_sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
H5Fclose(fid);
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(f_sid);
H5Sclose(m_sid);
H5Dclose(did);
H5Fclose(fid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: write_attr
*
* Purpose: utility function to write an attribute in LOC_ID
*
*-------------------------------------------------------------------------
*/
static
int write_attr(hid_t loc_id,
int rank,
hsize_t *dims,
const char *name,
hid_t tid,
void *buf)
{
hid_t aid=-1;
hid_t sid=-1;
/* create a space */
if((sid = H5Screate_simple(rank, dims, NULL)) < 0)
goto out;
/* create the attribute */
if((aid = H5Acreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/* write */
if(buf)
{
if(H5Awrite(aid, tid, buf) < 0)
goto out;
}
/* close */
H5Aclose(aid);
H5Sclose(sid);
return SUCCEED;
out:
H5Aclose(aid);
H5Sclose(sid);
return FAIL;
}
/*-------------------------------------------------------------------------
* Function: write_dset
*
* Purpose: utility function to create and write a dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
static
int write_dset( hid_t loc_id,
int rank,
hsize_t *dims,
const char *name,
hid_t tid,
void *buf )
{
hid_t did=-1;
hid_t sid=-1;
/* create a space */
if((sid = H5Screate_simple(rank, dims, NULL)) < 0)
goto out;
/* create the dataset */
if((did = H5Dcreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/* write */
if(buf)
{
if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
}
/* close */
H5Dclose(did);
H5Sclose(sid);
return SUCCEED;
out:
H5Dclose(did);
H5Sclose(sid);
return FAIL;
}
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