mirror of
https://github.com/HDFGroup/hdf5.git
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978 lines
28 KiB
C
978 lines
28 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*
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* Generate the binary hdf5 file for the h5copy tests
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*/
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#include "hdf5.h"
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#include "H5private.h"
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/* HDF file names */
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#define HDF_FILE1 "h5copytst.h5"
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#define HDF_FILE1_NEW "h5copytst_new.h5"
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#define HDF_FILE2 "h5copy_ref.h5"
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#define HDF_EXT_SRC_FILE "h5copy_extlinks_src.h5"
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#define HDF_EXT_TRG_FILE "h5copy_extlinks_trg.h5"
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/* objects in HDF_FILE1 */
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#define DATASET_SIMPLE "simple"
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#define DATASET_CHUNK "chunk"
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#define DATASET_COMPACT "compact"
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#define DATASET_COMPOUND "compound"
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#define DATASET_COMPRESSED "compressed"
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#define DATASET_NAMED_VL "named_vl"
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#define DATASET_NESTED_VL "nested_vl"
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#define DATASET_ATTR "dset_attr"
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#define ATTR "attr"
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#define GROUP_EMPTY "grp_empty"
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#define GROUP_DATASETS "grp_dsets"
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#define GROUP_NESTED "grp_nested"
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#define GROUP_ATTR "grp_attr"
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/* Obj reference */
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#define OBJ_REF_DS "Dset1"
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#define OBJ_REF_GRP "Group"
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/* Region reference */
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#define REG_REF_DS1 "Dset_REGREF"
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#define REG_REF_DS2 "Dset2"
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/*-------------------------------------------------------------------------
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* Function: gent_simple
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*
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* Purpose: Generate a simple dataset in LOC_ID
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_simple(hid_t loc_id)
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{
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hid_t sid, did;
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hsize_t dims[1] = {6};
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int buf[6] = {1, 2, 3, 4, 5, 6};
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/* create dataspace */
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sid = H5Screate_simple(1, dims, NULL);
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/* create dataset */
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did = H5Dcreate2(loc_id, DATASET_SIMPLE, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* write */
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H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
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/* close */
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H5Sclose(sid);
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H5Dclose(did);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_chunked
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*
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* Purpose: Generate a chunked dataset in LOC_ID
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_chunked(hid_t loc_id)
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{
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hid_t sid, did, pid;
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hsize_t dims[1] = {6};
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hsize_t chunk_dims[1] = {2};
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int buf[6] = {1, 2, 3, 4, 5, 6};
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/* create dataspace */
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sid = H5Screate_simple(1, dims, NULL);
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/* create property plist */
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pid = H5Pcreate(H5P_DATASET_CREATE);
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H5Pset_chunk(pid, 1, chunk_dims);
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/* create dataset */
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did = H5Dcreate2(loc_id, DATASET_CHUNK, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT);
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/* write */
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H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
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/* close */
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H5Sclose(sid);
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H5Dclose(did);
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H5Pclose(pid);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_compact
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*
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* Purpose: Generate a compact dataset in LOC_ID
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_compact(hid_t loc_id)
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{
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hid_t sid, did, pid;
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hsize_t dims[1] = {6};
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int buf[6] = {1, 2, 3, 4, 5, 6};
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/* create dataspace */
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sid = H5Screate_simple(1, dims, NULL);
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/* create property plist */
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pid = H5Pcreate(H5P_DATASET_CREATE);
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H5Pset_layout(pid, H5D_COMPACT);
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/* create dataset */
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did = H5Dcreate2(loc_id, DATASET_COMPACT, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT);
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/* write */
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H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
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/* close */
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H5Sclose(sid);
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H5Dclose(did);
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H5Pclose(pid);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_compound
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*
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* Purpose: Generate a compound dataset in LOC_ID
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_compound(hid_t loc_id)
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{
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typedef struct s_t {
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char str1[20];
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char str2[20];
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} s_t;
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hid_t sid, did, tid_c, tid_s;
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hsize_t dims[1] = {2};
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s_t buf[2] = {{"str1", "str2"}, {"str3", "str4"}};
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/* create dataspace */
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sid = H5Screate_simple(1, dims, NULL);
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/* create a compound type */
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tid_c = H5Tcreate(H5T_COMPOUND, sizeof(s_t));
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tid_s = H5Tcopy(H5T_C_S1);
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H5Tset_size(tid_s, 20);
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H5Tinsert(tid_c, "str1", HOFFSET(s_t, str1), tid_s);
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H5Tinsert(tid_c, "str2", HOFFSET(s_t, str2), tid_s);
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/* create dataset */
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did = H5Dcreate2(loc_id, DATASET_COMPOUND, tid_c, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* write */
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H5Dwrite(did, tid_c, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
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/* close */
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H5Sclose(sid);
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H5Dclose(did);
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H5Tclose(tid_c);
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H5Tclose(tid_s);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_compressed
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*
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* Purpose: Generate a compressed dataset in LOC_ID
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_compressed(hid_t loc_id)
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{
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hid_t sid, did, pid;
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hsize_t dims[1] = {6};
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hsize_t chunk_dims[1] = {2};
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int buf[6] = {1, 2, 3, 4, 5, 6};
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/* create dataspace */
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sid = H5Screate_simple(1, dims, NULL);
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/* create property plist for chunk*/
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pid = H5Pcreate(H5P_DATASET_CREATE);
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H5Pset_chunk(pid, 1, chunk_dims);
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/* set the deflate filter */
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#if defined(H5_HAVE_FILTER_DEFLATE)
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H5Pset_deflate(pid, 1);
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#endif
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/* create dataset */
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did = H5Dcreate2(loc_id, DATASET_COMPRESSED, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT);
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/* write */
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H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
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/* close */
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H5Sclose(sid);
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H5Dclose(did);
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H5Pclose(pid);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_named_vl
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*
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* Purpose: Generate a variable length named datatype for a dataset in
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LOC_ID
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_named_vl(hid_t loc_id)
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{
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hid_t sid, did, tid;
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hsize_t dims[1] = {2};
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hvl_t buf[2];
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/* allocate and initialize VL dataset to write */
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buf[0].len = 1;
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buf[0].p = malloc(1 * sizeof(int));
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((int *)buf[0].p)[0] = 1;
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buf[1].len = 2;
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buf[1].p = malloc(2 * sizeof(int));
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((int *)buf[1].p)[0] = 2;
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((int *)buf[1].p)[1] = 3;
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/* create dataspace */
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sid = H5Screate_simple(1, dims, NULL);
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/* create datatype */
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tid = H5Tvlen_create(H5T_NATIVE_INT);
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/* create named datatype */
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H5Tcommit2(loc_id, "vl", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* create dataset */
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did = H5Dcreate2(loc_id, DATASET_NAMED_VL, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* write */
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H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
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/* close */
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H5Treclaim(tid, sid, H5P_DEFAULT, buf);
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H5Sclose(sid);
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H5Dclose(did);
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H5Tclose(tid);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_nested_vl
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*
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* Purpose: Generate a nested variable length dataset in LOC_ID
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_nested_vl(hid_t loc_id)
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{
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hid_t sid, did, tid1, tid2;
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hsize_t dims[1] = {2};
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hvl_t buf[2];
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hvl_t *tvl;
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/* allocate and initialize VL dataset to write */
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buf[0].len = 1;
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buf[0].p = malloc(1 * sizeof(hvl_t));
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tvl = (hvl_t *)buf[0].p;
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tvl->p = malloc(1 * sizeof(int));
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tvl->len = 1;
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((int *)tvl->p)[0] = 1;
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buf[1].len = 1;
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buf[1].p = malloc(1 * sizeof(hvl_t));
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tvl = (hvl_t *)buf[1].p;
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tvl->p = malloc(2 * sizeof(int));
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tvl->len = 2;
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((int *)tvl->p)[0] = 2;
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((int *)tvl->p)[1] = 3;
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/* create dataspace */
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sid = H5Screate_simple(1, dims, NULL);
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/* create datatype */
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tid1 = H5Tvlen_create(H5T_NATIVE_INT);
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/* create nested VL datatype */
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tid2 = H5Tvlen_create(tid1);
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/* create dataset */
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did = H5Dcreate2(loc_id, DATASET_NESTED_VL, tid2, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* write */
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H5Dwrite(did, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
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/* close */
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H5Treclaim(tid2, sid, H5P_DEFAULT, buf);
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H5Sclose(sid);
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H5Dclose(did);
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H5Tclose(tid1);
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H5Tclose(tid2);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_att_compound_vlstr
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*
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* Purpose: Generate a dataset and a group.
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* Both has an attribute with a compound datatype consisting
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* of a variable length string
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_att_compound_vlstr(hid_t loc_id)
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{
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typedef struct { /* Compound structure for the attribute */
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int i;
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const char *v;
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} s1;
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hsize_t dim[1] = {1}; /* Dimension size */
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hid_t sid = H5I_INVALID_HID; /* Dataspace ID */
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hid_t tid = H5I_INVALID_HID; /* Datatype ID */
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hid_t aid = H5I_INVALID_HID; /* Attribute ID */
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hid_t did = H5I_INVALID_HID; /* Dataset ID */
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hid_t gid = H5I_INVALID_HID; /* Group ID */
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hid_t vl_str_tid = H5I_INVALID_HID; /* Variable length datatype ID */
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hid_t cmpd_tid = H5I_INVALID_HID; /* Compound datatype ID */
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hid_t null_sid = H5I_INVALID_HID; /* Null dataspace ID */
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s1 buf; /* Buffer */
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buf.i = 9;
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buf.v = "ThisIsAString";
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/* Create an integer datatype */
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tid = H5Tcopy(H5T_NATIVE_INT);
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/* Create a variable length string */
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vl_str_tid = H5Tcopy(H5T_C_S1);
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H5Tset_size(vl_str_tid, H5T_VARIABLE);
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/* Create a compound datatype with a variable length string and an integer */
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cmpd_tid = H5Tcreate(H5T_COMPOUND, sizeof(s1));
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H5Tinsert(cmpd_tid, "i", HOFFSET(s1, i), tid);
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H5Tinsert(cmpd_tid, "v", HOFFSET(s1, v), vl_str_tid);
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/* Create a dataset */
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null_sid = H5Screate(H5S_NULL);
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did = H5Dcreate2(loc_id, DATASET_ATTR, H5T_NATIVE_INT, null_sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* Attach an attribute with the compound datatype to the dataset */
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sid = H5Screate_simple(1, dim, dim);
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aid = H5Acreate2(did, ATTR, cmpd_tid, sid, H5P_DEFAULT, H5P_DEFAULT);
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/* Write the attribute */
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buf.i = 9;
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buf.v = "ThisIsAString";
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H5Awrite(aid, cmpd_tid, &buf);
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/* Close the dataset and its attribute */
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H5Dclose(did);
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H5Aclose(aid);
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/* Create a group */
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gid = H5Gcreate2(loc_id, GROUP_ATTR, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* Attach an attribute with the compound datatype to the group */
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aid = H5Acreate2(gid, ATTR, cmpd_tid, sid, H5P_DEFAULT, H5P_DEFAULT);
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H5Awrite(aid, cmpd_tid, &buf);
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/* Close the group and its attribute */
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H5Aclose(aid);
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H5Gclose(gid);
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/* Close dataspaces */
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H5Sclose(sid);
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H5Sclose(null_sid);
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/* Close datatypes */
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H5Tclose(tid);
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H5Tclose(vl_str_tid);
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H5Tclose(cmpd_tid);
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} /* gen_att_compound_vlstr() */
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/*-------------------------------------------------------------------------
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* Function: gent_datasets
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*
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* Purpose: Generate all datasets in a particular location
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_datasets(hid_t loc_id)
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{
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gent_simple(loc_id);
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gent_chunked(loc_id);
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gent_compact(loc_id);
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gent_compound(loc_id);
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gent_compressed(loc_id);
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gent_named_vl(loc_id);
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gent_nested_vl(loc_id);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_empty_group
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*
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* Purpose: Generate an empty group in a location
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_empty_group(hid_t loc_id)
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{
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hid_t gid;
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/* Create group in location */
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gid = H5Gcreate2(loc_id, GROUP_EMPTY, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* Release resources */
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H5Gclose(gid);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_nested_datasets
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*
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* Purpose: Generate a group in a location and populate it with the "standard"
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* datasets
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_nested_datasets(hid_t loc_id)
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{
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hid_t gid;
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/* Create group in location */
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gid = H5Gcreate2(loc_id, GROUP_DATASETS, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* Add datasets to group created */
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gent_datasets(gid);
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/* Release resources */
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H5Gclose(gid);
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}
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/*-------------------------------------------------------------------------
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* Function: gent_nested_group
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*
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* Purpose: Generate a group in a location and populate it with another group
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* containing the "standard" datasets
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*
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*-------------------------------------------------------------------------
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*/
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static void
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gent_nested_group(hid_t loc_id)
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{
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hid_t gid;
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/* Create group in location */
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gid = H5Gcreate2(loc_id, GROUP_NESTED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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/* Add datasets to group created */
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gent_nested_datasets(gid);
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/* Release resources */
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H5Gclose(gid);
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}
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/*-------------------------------------------------------------------------
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* Function: gen_obj_ref
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*
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* Purpose: Generate object references to dataset and group
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*
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*------------------------------------------------------------------------*/
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static herr_t
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gen_obj_ref(hid_t loc_id)
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{
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hid_t sid = 0, oid = 0;
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hsize_t dims1[1] = {3};
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hsize_t dims2[1] = {2};
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int data[3] = {10, 20, 30};
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int status;
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|
|
/*---------------------
|
|
* create obj references to the previously created objects.
|
|
* Passing -1 as reference is an object.*/
|
|
hobj_ref_t or_data[2]; /* write buffer */
|
|
herr_t ret = SUCCEED;
|
|
|
|
/*--------------
|
|
* add dataset */
|
|
sid = H5Screate_simple(1, dims1, NULL);
|
|
if (sid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
oid = H5Dcreate2(loc_id, OBJ_REF_DS, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (oid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
status = H5Dwrite(oid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
H5Dclose(oid);
|
|
H5Sclose(sid);
|
|
|
|
/*--------------
|
|
* add group */
|
|
oid = H5Gcreate2(loc_id, OBJ_REF_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (oid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
H5Gclose(oid);
|
|
|
|
status = H5Rcreate(&or_data[0], loc_id, OBJ_REF_DS, H5R_OBJECT, (hid_t)-1);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
status = H5Rcreate(&or_data[1], loc_id, OBJ_REF_GRP, H5R_OBJECT, (hid_t)-1);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
sid = H5Screate_simple(1, dims2, NULL);
|
|
if (sid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
oid = H5Dcreate2(loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (oid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, or_data);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
out:
|
|
if (oid > 0)
|
|
H5Dclose(oid);
|
|
if (sid > 0)
|
|
H5Sclose(sid);
|
|
|
|
return ret;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: gen_region_ref
|
|
*
|
|
* Purpose: Generate dataset region references
|
|
*
|
|
*------------------------------------------------------------------------*/
|
|
static herr_t
|
|
gen_region_ref(hid_t loc_id)
|
|
{
|
|
hid_t sid = 0, oid1 = 0, oid2 = 0;
|
|
int status;
|
|
herr_t ret = SUCCEED;
|
|
char data[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"};
|
|
hsize_t dims2[2] = {3, 16};
|
|
hsize_t coords[4][2] = {{0, 1}, {2, 11}, {1, 0}, {2, 4}};
|
|
hdset_reg_ref_t rr_data[2];
|
|
hsize_t start[2] = {0, 0};
|
|
hsize_t stride[2] = {2, 11};
|
|
hsize_t count[2] = {2, 2};
|
|
hsize_t block[2] = {1, 3};
|
|
hsize_t dims1[1] = {2};
|
|
|
|
sid = H5Screate_simple(2, dims2, NULL);
|
|
if (sid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* create normal dataset which is referred */
|
|
oid2 = H5Dcreate2(loc_id, REG_REF_DS2, H5T_STD_I8LE, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (oid2 < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* write values to dataset */
|
|
status = H5Dwrite(oid2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* select elements space for reference */
|
|
status = H5Sselect_elements(sid, H5S_SELECT_SET, 4, coords[0]);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* create region reference from elements space */
|
|
status = H5Rcreate(&rr_data[0], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* select hyperslab space for reference */
|
|
status = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* create region reference from hyperslab space */
|
|
status = H5Rcreate(&rr_data[1], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
H5Sclose(sid);
|
|
|
|
/* Create dataspace. */
|
|
sid = H5Screate_simple(1, dims1, NULL);
|
|
if (sid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* create region reference dataset */
|
|
oid1 = H5Dcreate2(loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (oid1 < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* write data as region references */
|
|
status = H5Dwrite(oid1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
out:
|
|
if (oid1 > 0)
|
|
H5Dclose(oid1);
|
|
if (oid2 > 0)
|
|
H5Dclose(oid2);
|
|
if (sid > 0)
|
|
H5Sclose(sid);
|
|
|
|
return ret;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: Test_Obj_Copy
|
|
*
|
|
* Purpose: Testing with various objects
|
|
*
|
|
*------------------------------------------------------------------------*/
|
|
static void
|
|
Test_Obj_Copy(void)
|
|
{
|
|
hid_t fid = H5I_INVALID_HID; /* File id */
|
|
hid_t fapl_new = (-1); /* File access property id */
|
|
unsigned new_format; /* New format or old format */
|
|
|
|
if ((fapl_new = H5Pcreate(H5P_FILE_ACCESS)) < 0) {
|
|
fprintf(stderr, "Error: H5Pcreate failed.\n");
|
|
goto out;
|
|
}
|
|
if (H5Pset_libver_bounds(fapl_new, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) {
|
|
fprintf(stderr, "Error: H5Pset_libver_bounds failed.\n");
|
|
goto out;
|
|
}
|
|
|
|
/* Test with old & new format groups */
|
|
for (new_format = false; new_format <= true; new_format++) {
|
|
|
|
/* Set the FAPL for the type of format */
|
|
/* Create source file */
|
|
if (new_format)
|
|
fid = H5Fcreate(HDF_FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_new);
|
|
else
|
|
fid = H5Fcreate(HDF_FILE1_NEW, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (fid < 0) {
|
|
fprintf(stderr, "Error: H5Fcreate failed.\n");
|
|
goto out;
|
|
}
|
|
|
|
gent_datasets(fid);
|
|
gent_empty_group(fid);
|
|
gent_nested_datasets(fid);
|
|
gent_nested_group(fid);
|
|
gent_att_compound_vlstr(fid);
|
|
|
|
H5Fclose(fid);
|
|
fid = (-1);
|
|
} /* end for */
|
|
|
|
out:
|
|
/*-----------------------------------------------------------------------
|
|
* Close
|
|
*------------------------------------------------------------------------*/
|
|
if (fid > 0)
|
|
H5Fclose(fid);
|
|
if (fapl_new > 0)
|
|
H5Pclose(fapl_new);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: Test_Ref_Copy
|
|
*
|
|
* Purpose: Testing with various references
|
|
*
|
|
*------------------------------------------------------------------------*/
|
|
static void
|
|
Test_Ref_Copy(void)
|
|
{
|
|
hid_t fid = 0;
|
|
herr_t status;
|
|
|
|
fid = H5Fcreate(HDF_FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (fid < 0) {
|
|
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_FILE2);
|
|
goto out;
|
|
}
|
|
|
|
/* add object reference */
|
|
status = gen_obj_ref(fid);
|
|
if (status < 0)
|
|
fprintf(stderr, "Failed to generate object reference.\n");
|
|
|
|
/* add region reference */
|
|
status = gen_region_ref(fid);
|
|
if (status < 0)
|
|
fprintf(stderr, "Failed to generate region reference.\n");
|
|
|
|
out:
|
|
/*-----------------------------------------------------------------------
|
|
* Close
|
|
*------------------------------------------------------------------------*/
|
|
if (fid > 0)
|
|
H5Fclose(fid);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: gen_extlink_trg
|
|
*
|
|
* Purpose: generate target external link objs
|
|
*
|
|
*------------------------------------------------------------------------*/
|
|
static herr_t
|
|
gen_extlink_trg(hid_t loc_id)
|
|
{
|
|
hid_t gid = 0, tid = 0;
|
|
int status;
|
|
herr_t ret = SUCCEED;
|
|
|
|
/*-----------------------------------------------------------------------
|
|
* Groups
|
|
*------------------------------------------------------------------------*/
|
|
/*--------------
|
|
* target file */
|
|
gid = H5Gcreate2(loc_id, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (gid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/*--------------
|
|
* add dataset */
|
|
gent_simple(loc_id);
|
|
|
|
/*--------------------
|
|
* add named datatype
|
|
*/
|
|
tid = H5Tcopy(H5T_NATIVE_INT);
|
|
status = H5Tcommit2(loc_id, "datatype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
out:
|
|
if (gid > 0)
|
|
H5Gclose(gid);
|
|
if (tid > 0)
|
|
H5Tclose(tid);
|
|
|
|
return ret;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: gen_extlink_src
|
|
*
|
|
* Purpose: generate source external link objs
|
|
*
|
|
*------------------------------------------------------------------------*/
|
|
static herr_t
|
|
gen_extlink_src(hid_t loc_id)
|
|
{
|
|
hid_t gid = 0;
|
|
int status;
|
|
herr_t ret = SUCCEED;
|
|
|
|
/*-----------------------------------------------------------------------
|
|
* Groups
|
|
*------------------------------------------------------------------------*/
|
|
gid = H5Gcreate2(loc_id, "/group_ext", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (gid < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/*-----------------------------------------------------------------------
|
|
* External links
|
|
*------------------------------------------------------------------------*/
|
|
/* link to dataset */
|
|
status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/simple", gid, "extlink_dset", H5P_DEFAULT, H5P_DEFAULT);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* link to group */
|
|
status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/group", gid, "extlink_grp", H5P_DEFAULT, H5P_DEFAULT);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* link to datatype */
|
|
status =
|
|
H5Lcreate_external(HDF_EXT_TRG_FILE, "/datatype", gid, "extlink_datatype", H5P_DEFAULT, H5P_DEFAULT);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* dangling link - no obj*/
|
|
status = H5Lcreate_external(HDF_EXT_TRG_FILE, "notyet", gid, "extlink_notyet1", H5P_DEFAULT, H5P_DEFAULT);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
/* dangling link - no file */
|
|
status = H5Lcreate_external("notyet_file.h5", "notyet", gid, "extlink_notyet2", H5P_DEFAULT, H5P_DEFAULT);
|
|
if (status < 0) {
|
|
fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", __func__, __LINE__);
|
|
ret = FAIL;
|
|
goto out;
|
|
}
|
|
|
|
out:
|
|
if (gid > 0)
|
|
H5Gclose(gid);
|
|
|
|
return ret;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: Test_Extlink_Copy
|
|
*
|
|
* Purpose: generate external link files
|
|
*
|
|
*------------------------------------------------------------------------*/
|
|
static void
|
|
Test_Extlink_Copy(void)
|
|
{
|
|
hid_t fid1 = 0;
|
|
hid_t fid2 = 0;
|
|
herr_t status;
|
|
|
|
fid1 = H5Fcreate(HDF_EXT_SRC_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (fid1 < 0) {
|
|
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_EXT_SRC_FILE);
|
|
goto out;
|
|
}
|
|
|
|
fid2 = H5Fcreate(HDF_EXT_TRG_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
if (fid2 < 0) {
|
|
fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_EXT_TRG_FILE);
|
|
goto out;
|
|
}
|
|
|
|
/* add links to source external link file */
|
|
status = gen_extlink_src(fid1);
|
|
if (status < 0)
|
|
fprintf(stderr, "Error: %s> gen_extlink_src failed.\n", HDF_EXT_SRC_FILE);
|
|
|
|
/* add objs to target external link file */
|
|
status = gen_extlink_trg(fid2);
|
|
if (status < 0)
|
|
fprintf(stderr, "Error: %s> gen_extlink_trg failed.\n", HDF_EXT_TRG_FILE);
|
|
|
|
out:
|
|
/*-----------------------------------------------------------------------
|
|
* Close
|
|
*------------------------------------------------------------------------*/
|
|
if (fid1 > 0)
|
|
H5Fclose(fid1);
|
|
if (fid2 > 0)
|
|
H5Fclose(fid2);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: main
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
int
|
|
main(void)
|
|
{
|
|
Test_Obj_Copy();
|
|
Test_Ref_Copy();
|
|
Test_Extlink_Copy();
|
|
|
|
return 0;
|
|
}
|