mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-21 07:51:46 +08:00
d6e767c21d
Add work-around to allow reading files that were produced with a buggy earlier version of the library, which could create objects with the wrong object header message count. There is now a configure flag "--enable-strict-format-checks" which triggers a failure on reading a file with this sort of corruption (when enabled) and allows the object to be read (when disabled). The default value for the "strict-format-checks" flag is yes when the "debug" flag is enabled and no when the "debug" flag is disabled. Note that if strict format checks are disabled (allowing objects with this particular kind of corruption to be read) and the file is opened with write access, the library will re-write the object header for the corrupt object with the correct # of object header messages. This closes bugzilla bug #1010. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
763 lines
27 KiB
Makefile
763 lines
27 KiB
Makefile
# Makefile.in generated by automake 1.10 from Makefile.am.
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# @configure_input@
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# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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# 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
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# This Makefile.in is free software; the Free Software Foundation
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# gives unlimited permission to copy and/or distribute it,
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# with or without modifications, as long as this notice is preserved.
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
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# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
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# PARTICULAR PURPOSE.
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@SET_MAKE@
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#
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# Copyright by The HDF Group.
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# Copyright by the Board of Trustees of the University of Illinois.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the files COPYING and Copyright.html. COPYING can be found at the root
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# of the source code distribution tree; Copyright.html can be found at the
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# root level of an installed copy of the electronic HDF5 document set and
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# is linked from the top-level documents page. It can also be found at
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# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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# access to either file, you may request a copy from help@hdfgroup.org.
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#
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# HDF5 Library Examples Makefile(.in)
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#
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# We can't tell automake about example programs, because they need to be
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am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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install_sh_DATA = $(install_sh) -c -m 644
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install_sh_SCRIPT = $(install_sh) -c
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INSTALL_HEADER = $(INSTALL_DATA)
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transform = $(program_transform_name)
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NORMAL_INSTALL = :
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SOURCES =
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# Set the paths for AFS installs of autotools for Linux machines
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# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
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PATH_SEPARATOR = @PATH_SEPARATOR@
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PTHREAD = @PTHREAD@
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# Hardcode SHELL to be /bin/sh. Most machines have this shell, and
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# on at least one machine configure fails to detect its existence (janus).
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# Shell commands used in Makefiles
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all: all-am
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if test -d $$d/$$file; then \
|
|
dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
|
|
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
|
|
cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
|
|
fi; \
|
|
cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
|
|
else \
|
|
test -f $(distdir)/$$file \
|
|
|| cp -p $$d/$$file $(distdir)/$$file \
|
|
|| exit 1; \
|
|
fi; \
|
|
done
|
|
check-am: all-am
|
|
$(MAKE) $(AM_MAKEFLAGS) check-TESTS
|
|
check: check-am
|
|
all-am: Makefile all-local
|
|
installdirs:
|
|
install: install-am
|
|
install-exec: install-exec-am
|
|
install-data: install-data-am
|
|
uninstall: uninstall-am
|
|
|
|
install-am: all-am
|
|
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
|
|
|
|
installcheck: installcheck-am
|
|
install-strip:
|
|
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
|
|
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
|
|
`test -z '$(STRIP)' || \
|
|
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
|
|
mostlyclean-generic:
|
|
-test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES)
|
|
|
|
clean-generic:
|
|
-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
|
|
|
|
distclean-generic:
|
|
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
|
|
|
|
maintainer-clean-generic:
|
|
@echo "This command is intended for maintainers to use"
|
|
@echo "it deletes files that may require special tools to rebuild."
|
|
clean: clean-am
|
|
|
|
clean-am: clean-generic clean-libtool mostlyclean-am
|
|
|
|
distclean: distclean-am
|
|
-rm -f Makefile
|
|
distclean-am: clean-am distclean-generic
|
|
|
|
dvi: dvi-am
|
|
|
|
dvi-am:
|
|
|
|
html: html-am
|
|
|
|
info: info-am
|
|
|
|
info-am:
|
|
|
|
install-data-am: install-data-local
|
|
|
|
install-dvi: install-dvi-am
|
|
|
|
install-exec-am:
|
|
|
|
install-html: install-html-am
|
|
|
|
install-info: install-info-am
|
|
|
|
install-man:
|
|
|
|
install-pdf: install-pdf-am
|
|
|
|
install-ps: install-ps-am
|
|
|
|
installcheck-am: installcheck-local
|
|
|
|
maintainer-clean: maintainer-clean-am
|
|
-rm -f Makefile
|
|
maintainer-clean-am: distclean-am maintainer-clean-generic
|
|
|
|
mostlyclean: mostlyclean-am
|
|
|
|
mostlyclean-am: mostlyclean-generic mostlyclean-libtool \
|
|
mostlyclean-local
|
|
|
|
pdf: pdf-am
|
|
|
|
pdf-am:
|
|
|
|
ps: ps-am
|
|
|
|
ps-am:
|
|
|
|
uninstall-am: uninstall-local
|
|
|
|
.MAKE: install-am install-strip
|
|
|
|
.PHONY: all all-am all-local check check-TESTS check-am clean \
|
|
clean-generic clean-libtool distclean distclean-generic \
|
|
distclean-libtool distdir dvi dvi-am html html-am info info-am \
|
|
install install-am install-data install-data-am \
|
|
install-data-local install-dvi install-dvi-am install-exec \
|
|
install-exec-am install-html install-html-am install-info \
|
|
install-info-am install-man install-pdf install-pdf-am \
|
|
install-ps install-ps-am install-strip installcheck \
|
|
installcheck-am installcheck-local installdirs \
|
|
maintainer-clean maintainer-clean-generic mostlyclean \
|
|
mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \
|
|
pdf-am ps ps-am uninstall uninstall-am uninstall-local
|
|
|
|
|
|
# List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
|
|
# This tells the Makefiles that these targets are not files to be built but
|
|
# commands that should be executed even if a file with the same name already
|
|
# exists.
|
|
.PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
|
|
build-tests check-clean check-install check-p check-s check-vfd \
|
|
install-doc lib progs tests uninstall-doc _exec_check-s _test help
|
|
|
|
help:
|
|
@$(top_srcdir)/bin/makehelp
|
|
|
|
# How to build programs using h5c++
|
|
$(EXTRA_PROG): $(H5CPP)
|
|
$(H5CPP) $(H5CCFLAGS) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
|
|
|
|
# List dependencies for each program. Normally, automake would take
|
|
# care of this for us, but if we tell automake about the programs it
|
|
# will try to build them with the normal C++ compiler, not h5c++. This is
|
|
# an inelegant way of solving the problem, unfortunately.
|
|
ptExampleFL: ptExampleFL.cpp
|
|
ptExampleVL: ptExampleVL.cpp
|
|
|
|
# How to create EXAMPLEDIR if it doesn't already exist
|
|
$(EXAMPLEDIR):
|
|
-$(top_srcdir)/bin/mkdirs $@
|
|
|
|
# Install and uninstall rules. We install the source files, not the
|
|
# example programs themselves.
|
|
install-data-local:
|
|
@$(MAKE) $(AM_MAKEFLAGS) install-examples
|
|
uninstall-local:
|
|
@$(MAKE) $(AM_MAKEFLAGS) uninstall-examples
|
|
|
|
install-examples: $(EXAMPLEDIR) $(INSTALL_FILES)
|
|
@for f in X $(INSTALL_FILES); do \
|
|
if test $$f != X; then \
|
|
(set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);\
|
|
fi; \
|
|
done
|
|
|
|
uninstall-examples:
|
|
@if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \
|
|
set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \
|
|
fi
|
|
|
|
installcheck-local:
|
|
@if test "$(STATIC_SHARED)" = "static, shared"; then \
|
|
H5CCFLAGS="-shlib" $(MAKE) $(AM_MAKEFLAGS) check; \
|
|
$(MAKE) $(AM_MAKEFLAGS) clean; \
|
|
H5CCFLAGS="" $(MAKE) $(AM_MAKEFLAGS) check; \
|
|
elif test "$(STATIC_SHARED)" = "shared"; then \
|
|
H5CCFLAGS="-shlib" $(MAKE) $(AM_MAKEFLAGS) check; \
|
|
else \
|
|
$(MAKE) $(AM_MAKEFLAGS) check; \
|
|
fi
|
|
|
|
# lib/progs/tests targets recurse into subdirectories. build-* targets
|
|
# build files in this directory.
|
|
build-lib: $(LIB)
|
|
build-progs: $(LIB) $(PROGS)
|
|
build-tests: $(LIB) $(PROGS) $(TESTS)
|
|
|
|
# General rule for recursive building targets.
|
|
# BUILT_SOURCES contain targets that need to be built before anything else
|
|
# in the directory (e.g., for Fortran type detection)
|
|
lib progs tests check-s check-p :: $(BUILT_SOURCES)
|
|
@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
|
|
@for d in X $(SUBDIRS); do \
|
|
if test $$d != X && test $$d != .; then \
|
|
(set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \
|
|
fi; \
|
|
done
|
|
|
|
# General rule for recursive cleaning targets. Like the rule above,
|
|
# but doesn't require building BUILT_SOURCES.
|
|
check-clean ::
|
|
@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
|
|
@for d in X $(SUBDIRS); do \
|
|
if test $$d != X && test $$d != .; then \
|
|
(set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \
|
|
fi; \
|
|
done
|
|
|
|
# Tell Automake to build tests when the user types `make all' (this is
|
|
# not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since
|
|
# Automake won't build them automatically, either.
|
|
all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
|
|
|
|
# make install-doc doesn't do anything outside of doc directory, but
|
|
# Makefiles should recognize it.
|
|
# UPDATE: docs no longer reside in this build tree, so this target
|
|
# is depreciated.
|
|
install-doc uninstall-doc:
|
|
@echo "Nothing to be done."
|
|
|
|
# clean up files generated by tests so they can be re-run.
|
|
build-check-clean:
|
|
$(RM) -rf $(CHECK_CLEANFILES)
|
|
|
|
# run check-clean whenever mostlyclean is run
|
|
mostlyclean-local: build-check-clean
|
|
|
|
# check-install is just a synonym for installcheck
|
|
check-install: installcheck
|
|
|
|
# Run each test in order, passing $(TEST_FLAGS) to the program.
|
|
# Since tests are done in a shell loop, "make -i" does apply inside it.
|
|
# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
|
|
# The timestamps give a rough idea how much time the tests use.
|
|
#
|
|
# Note that targets in TESTS (defined above) will be built when the user
|
|
# types 'make tests' or 'make check', but only programs in TEST_PROG,
|
|
# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
|
|
check-TESTS: test
|
|
|
|
test _test:
|
|
@$(MAKE) build-check-s
|
|
@$(MAKE) build-check-p
|
|
|
|
# Actual execution of check-s.
|
|
build-check-s: $(LIB) $(PROGS) $(TESTS)
|
|
@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
|
|
echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
|
|
fi
|
|
@$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
|
|
@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
|
|
echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
|
|
fi
|
|
|
|
_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
|
|
|
|
# The dummy.chkexe here prevents the target from being
|
|
# empty if there are no tests in the current directory.
|
|
# $${log} is the log file.
|
|
# $${tname} is the name of test.
|
|
$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
|
|
@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
|
|
tname=$(@:.chkexe_=)$(EXEEXT);\
|
|
log=$(@:.chkexe_=.chklog); \
|
|
echo "============================"; \
|
|
if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
|
|
echo "No need to test $${tname} again."; \
|
|
else \
|
|
echo "============================" > $${log}; \
|
|
if test "X$(HDF_FORTRAN)" = "Xyes"; then \
|
|
echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
|
|
echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
|
|
elif test "X$(HDF_CXX)" = "Xyes"; then \
|
|
echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
|
|
echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
|
|
else \
|
|
echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
|
|
echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
|
|
fi; \
|
|
echo "============================" >> $${log}; \
|
|
srcdir="$(srcdir)" \
|
|
$(TIME) $(RUNTESTS) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
|
|
&& touch $(@:.chkexe_=.chkexe) || \
|
|
(test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
|
|
(cat $${log} && false) || exit 1; \
|
|
echo "" >> $${log}; \
|
|
echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
|
|
echo "============================" >> $${log}; \
|
|
echo "Finished testing $${tname} $(TEST_FLAGS)"; \
|
|
cat $${log}; \
|
|
fi; \
|
|
fi
|
|
|
|
# The dummysh.chkexe here prevents the target from being
|
|
# empty if there are no tests in the current directory.
|
|
# $${log} is the log file.
|
|
# $${tname} is the name of test.
|
|
$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
|
|
@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
|
|
cmd=$(@:.chkexe_=);\
|
|
tname=`basename $$cmd`;\
|
|
chkname=`basename $(@:.chkexe_=.chkexe)`;\
|
|
log=`basename $(@:.chkexe_=.chklog)`; \
|
|
echo "============================"; \
|
|
if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
|
|
echo "No need to test $${tname} again."; \
|
|
else \
|
|
echo "============================" > $${log}; \
|
|
if test "X$(HDF_FORTRAN)" = "Xyes"; then \
|
|
echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
|
|
echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
|
|
elif test "X$(HDF_CXX)" = "Xyes"; then \
|
|
echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
|
|
echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
|
|
else \
|
|
echo "Testing $${tname} $(TEST_FLAGS)"; \
|
|
echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
|
|
fi; \
|
|
echo "============================" >> $${log}; \
|
|
RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \
|
|
srcdir="$(srcdir)" \
|
|
$(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
|
|
&& touch $${chkname} || \
|
|
(test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
|
|
(cat $${log} && false) || exit 1; \
|
|
echo "" >> $${log}; \
|
|
echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
|
|
echo "============================" >> $${log}; \
|
|
echo "Finished testing $${tname} $(TEST_FLAGS)"; \
|
|
cat $${log}; \
|
|
fi; \
|
|
echo "============================"; \
|
|
fi
|
|
|
|
# Actual execution of check-p.
|
|
build-check-p: $(LIB) $(PROGS) $(TESTS)
|
|
@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
|
|
echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
|
|
fi
|
|
@if test -n "$(TEST_PROG_PARA)"; then \
|
|
echo "**** Hint ****"; \
|
|
echo "Parallel test files reside in the current directory" \
|
|
"by default."; \
|
|
echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \
|
|
echo " HDF5_PARAPREFIX=/PFS/user/me"; \
|
|
echo " export HDF5_PARAPREFIX"; \
|
|
echo " make check"; \
|
|
echo "**** end of Hint ****"; \
|
|
fi
|
|
@for test in $(TEST_PROG_PARA) dummy; do \
|
|
if test $$test != dummy; then \
|
|
$(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
|
|
RUNTESTS="$(RUNPARALLEL)" || exit 1; \
|
|
fi; \
|
|
done
|
|
@for test in $(TEST_SCRIPT_PARA) dummy; do \
|
|
if test $$test != dummy; then \
|
|
$(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
|
|
fi; \
|
|
done
|
|
@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
|
|
echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
|
|
fi
|
|
|
|
# Run test with different Virtual File Driver
|
|
check-vfd: $(LIB) $(PROGS) $(TESTS)
|
|
@for vfd in $(VFD_LIST) dummy; do \
|
|
if test $$vfd != dummy; then \
|
|
echo "============================"; \
|
|
echo "Testing Virtual File Driver $$vfd"; \
|
|
echo "============================"; \
|
|
$(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \
|
|
HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \
|
|
fi; \
|
|
done
|
|
# Tell versions [3.59,3.63) of GNU make to not export all variables.
|
|
# Otherwise a system limit (for SysV at least) may be exceeded.
|
|
.NOEXPORT:
|