mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-11-27 02:10:55 +08:00
dc9288a447
Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: jam, h5committest, ember
145 lines
3.6 KiB
Bash
145 lines
3.6 KiB
Bash
# -*- shell-script -*-
|
|
#
|
|
# Copyright by The HDF Group.
|
|
# Copyright by the Board of Trustees of the University of Illinois.
|
|
# All rights reserved.
|
|
#
|
|
# This file is part of HDF5. The full HDF5 copyright notice, including
|
|
# terms governing use, modification, and redistribution, is contained in
|
|
# the files COPYING and Copyright.html. COPYING can be found at the root
|
|
# of the source code distribution tree; Copyright.html can be found at the
|
|
# root level of an installed copy of the electronic HDF5 document set and
|
|
# is linked from the top-level documents page. It can also be found at
|
|
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
|
|
# access to either file, you may request a copy from help@hdfgroup.org.
|
|
|
|
|
|
# This file is part of the HDF5 build script. It is processed shortly
|
|
# after configure starts and defines, among other things, flags for
|
|
# the various compile modes.
|
|
|
|
# Use Intel C compiler by default (if it's available).
|
|
# Use mpicc for parallel by default.
|
|
if test "X$CC" = "X"; then
|
|
if test "X-$enable_parallel" = "X-yes"; then
|
|
CC=mpicc
|
|
CC_BASENAME=mpicc
|
|
elif which icc > /dev/null; then
|
|
CC=icc
|
|
CC_BASENAME=icc
|
|
fi
|
|
fi
|
|
|
|
# Define RUNPARALLEL if parallel mode is enabled or a parallel compiler used.
|
|
if test "X-$enable_parallel" = "X-yes" -o X-$CC_BASENAME = X-mpicc; then
|
|
RUNPARALLEL=${RUNPARALLEL="mpirun -np \$\${NPROCS:=6}"}
|
|
fi
|
|
|
|
#----------------------------------------------------------------------------
|
|
# Compiler flags. The CPPFLAGS values should not include package debug
|
|
# flags like `-DH5G_DEBUG' since these are added with the
|
|
# `--enable-debug' switch of configure.
|
|
|
|
case $CC_BASENAME in
|
|
ecc|icc)
|
|
. $srcdir/config/intel-flags
|
|
;;
|
|
|
|
gcc)
|
|
. $srcdir/config/gnu-flags
|
|
;;
|
|
|
|
*)
|
|
H5_CFLAGS="$H5_CFLAGS -ansi"
|
|
DEBUG_CFLAGS="-g"
|
|
DEBUG_CPPFLAGS=
|
|
PROD_CFLAGS="-O"
|
|
PROD_CPPFLAGS=
|
|
PROFILE_CFLAGS="-pg"
|
|
PROFILE_CPPFLAGS=
|
|
;;
|
|
esac
|
|
|
|
# The default Fortran 90 compiler
|
|
|
|
# Use Intel Fortran compiler by default.
|
|
if test X-$enable_fortran = X-yes -a "X-$FC" = "X-"; then
|
|
if test "X-$enable_parallel" = "X-yes"; then
|
|
FC=mpif90
|
|
else
|
|
FC="ifort"
|
|
fi
|
|
fi
|
|
|
|
case $FC in
|
|
*efc|*ifort)
|
|
# this is for efc v7. Older efc do not work with these.
|
|
# -Vaxlib is for non-standard fortran calls like exit().
|
|
MORE_FCFLAGS='-fpp -DDEC$=DEC_ -DMS$=MS_ -Vaxlib'
|
|
H5_FCFLAGS="$H5_FCFLAGS $MORE_FCFLAGS"
|
|
f9x_flags_set=yes
|
|
;;
|
|
|
|
*)
|
|
f9x_flags_set=yes
|
|
;;
|
|
esac
|
|
|
|
# The following is not right and need work.
|
|
if test "X$f9x_flags_set" = "X"; then
|
|
F9XSUFFIXFLAG=""
|
|
FSEARCH_DIRS=""
|
|
H5_FCFLAGS="$H5_FCFLAGS"
|
|
DEBUG_FCFLAGS=""
|
|
PROD_FCFLAGS=""
|
|
PROFILE_FCFLAGS=""
|
|
f9x_flags_set=yes
|
|
fi
|
|
|
|
# The Default settings for C++
|
|
# Intel changed C++ compiler's name from "icc" to "icpc" in version 8.1
|
|
if test -z "$CXX"; then
|
|
CXX=icpc
|
|
CXX_BASENAME=icpc
|
|
fi
|
|
|
|
# A patch to make g++ getting the default settings.
|
|
# CXX_BASENAME should have been set in configure.
|
|
if test "X$CXX" = "Xg++"; then
|
|
CXX_BASENAME=g++
|
|
fi
|
|
|
|
|
|
case $CXX_BASENAME in
|
|
ecc|icc) # Intel compilers
|
|
# Default to C99 standard.
|
|
H5_CXXFLAGS="${H5_CXXFLAGS:--std=c99}"
|
|
DEBUG_CXXFLAGS="-g -w2 -Wall"
|
|
DEBUG_CPPFLAGS=
|
|
PROD_CXXFLAGS="" #Default optimization O2 is used
|
|
PROD_CPPFLAGS=
|
|
PROFILE_CXXFLAGS="-pg"
|
|
PROFILE_CPPFLAGS=
|
|
;;
|
|
g++)
|
|
H5_CXXFLAGS="$H5_CXXFLAGS -Wsign-compare" #Only works for some versions
|
|
DEBUG_CXXFLAGS="-g -fverbose-asm"
|
|
DEBUG_CPPFLAGS=
|
|
PROD_CXXFLAGS="-O3 -fomit-frame-pointer"
|
|
PROD_CPPFLAGS=
|
|
PROFILE_CXXFLAGS="-pg"
|
|
PROFILE_CPPFLAGS=
|
|
;;
|
|
|
|
*)
|
|
# Default to C99 standard.
|
|
H5_CXXFLAGS="${H5_CXXFLAGS:--std=c99}"
|
|
DEBUG_CXXFLAGS="-g"
|
|
DEBUG_CPPFLAGS=
|
|
PROD_CXXFLAGS="-O"
|
|
PROD_CPPFLAGS=
|
|
PROFILE_CXXFLAGS="-pg"
|
|
PROFILE_CPPFLAGS=
|
|
;;
|
|
esac
|