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c01750fa74
---------------------- ./src/H5B.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5S.c ./src/H5Sprivate.h ./src/H5Spublic.h ./src/H5Ssimp.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5V.c ./src/H5Vprivate.h ./src/H5private.h ./src/H5public.h ./src/h5ls.c ./test/cmpd_dset.c ./test/dsets.c ./test/extend.c ./test/external.c ./test/hyperslab.c ./test/iopipe.c ./test/istore.c ./test/shtype.c ./test/tfile.c ./test/th5s.c Anything having to do with the size of a dataset now uses the types `hsize_t' and `hssize_t' which must be the same size and at least as large as `size_t'. This isn't fully tested yet, so hsize_t and hssize_t are defined as size_t and ssize_t in H5public.h. Setting them to larger values will trip up gcc versions less than 2.8.1 on x86 platforms. Documented unused function formals with `__unused__' before the formal name. This also has the effect of supressing warning messages for gcc since it's defined to be `__attribute__((unused))' in the H5private.h file. ./src/debug.c ./src/h5ls.c If the file name contains a `%' then the file is opened as a file family with H5P_DEFAULT for the file member access property list. ./src/h5ls.c The group name is optional, defaulting to `/'. ./src/hdf5.h Added some missing public header files.
319 lines
8.3 KiB
C
319 lines
8.3 KiB
C
/*
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* Copyright (C) 1998 NCSA
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* All rights reserved.
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*
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* Programmer: Robb Matzke <matzke@llnl.gov>
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* Thursday, March 12, 1998
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*/
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#undef NDEBUG
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#include <assert.h>
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#include <fcntl.h>
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#include <hdf5.h>
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#include <stdio.h>
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#include <string.h>
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#include <stdlib.h>
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#include <sys/types.h>
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#include <sys/time.h>
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#include <sys/resource.h>
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#include <unistd.h>
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#define RAW_FILE_NAME "iopipe.raw"
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#define HDF5_FILE_NAME "iopipe.h5"
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#define HEADING "%-16s"
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#define PROGRESS '='
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#if 1
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/* Normal testing */
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#define REQUEST_SIZE_X 4579
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#define REQUEST_SIZE_Y 4579
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#define NREAD_REQUESTS 45
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#define NWRITE_REQUESTS 45
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#else
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/* Speedy testing */
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#define REQUEST_SIZE_X 1000
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#define REQUEST_SIZE_Y 1000
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#define NREAD_REQUESTS 45
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#define NWRITE_REQUESTS 45
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#endif
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/*-------------------------------------------------------------------------
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* Function: print_stats
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*
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* Purpose: Prints statistics
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*
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* Return: void
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*
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* Programmer: Robb Matzke
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* Thursday, March 12, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static void
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print_stats (const char *prefix,
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struct rusage *r_start, struct rusage *r_stop,
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struct timeval *t_start, struct timeval *t_stop,
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size_t nbytes)
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{
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double u_time, s_time, e_time, bw;
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u_time = ((double)(r_stop->ru_utime.tv_sec)+
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(double)(r_stop->ru_utime.tv_usec)/1000000.0) -
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((double)(r_start->ru_utime.tv_sec)+
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(double)(r_start->ru_utime.tv_usec)/1000000.0);
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s_time = ((double)(r_stop->ru_stime.tv_sec)+
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(double)(r_stop->ru_stime.tv_usec)/1000000.0) -
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((double)(r_start->ru_stime.tv_sec)+
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(double)(r_start->ru_stime.tv_usec)/1000000.0);
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e_time = ((double)(t_stop->tv_sec)+
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(double)(t_stop->tv_usec)/1000000.0) -
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((double)(t_start->tv_sec)+
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(double)(t_start->tv_usec)/1000000.0);
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bw = (double)nbytes / e_time;
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printf (HEADING "%1.2fuser %1.2fsystem %1.2felapsed %1.2fMB/s\n",
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prefix, u_time, s_time, e_time, bw/(1024*1024));
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}
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/*-------------------------------------------------------------------------
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* Function: synchronize
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*
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* Purpose:
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*
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* Return: void
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*
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* Programmer: Robb Matzke
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* Thursday, March 12, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static void
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synchronize (void)
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{
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#ifdef HAVE_SYSTEM
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system ("sync");
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system ("df >/dev/null");
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#if 0
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/*
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* This works well on Linux to get rid of all cached disk buffers. The
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* number should be approximately the amount of RAM in MB. Do not
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* include swap space in that amount or the command will fail.
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*/
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system ("/sbin/swapout 128");
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#endif
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#endif
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}
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/*-------------------------------------------------------------------------
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* Function: main
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*
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* Purpose:
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*
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* Return: Success:
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*
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* Failure:
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*
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* Programmer: Robb Matzke
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* Thursday, March 12, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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int
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main (void)
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{
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static hsize_t size[2] = {REQUEST_SIZE_X, REQUEST_SIZE_Y};
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static int nread=NREAD_REQUESTS, nwrite=NWRITE_REQUESTS;
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unsigned char *the_data = NULL;
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hid_t file, dset, file_space=-1;
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herr_t status;
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struct rusage r_start, r_stop;
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struct timeval t_start, t_stop;
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int i, fd;
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hssize_t n;
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off_t offset;
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hssize_t start[2];
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hsize_t count[2];
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printf ("I/O request size is %1.1fMB\n",
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((double)(size[0])*(double)(size[1]))/(1024.0*1024));
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/* Open the files */
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file = H5Fcreate (HDF5_FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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assert (file>=0);
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fd = open (RAW_FILE_NAME, O_RDWR|O_CREAT|O_TRUNC, 0666);
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assert (fd>=0);
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/* Create the dataset */
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file_space = H5Screate_simple (2, size, size);
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assert (file_space>=0);
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dset = H5Dcreate (file, "dset", H5T_NATIVE_UCHAR, file_space, H5P_DEFAULT);
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assert (dset>=0);
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the_data = malloc ((size_t)(size[0]*size[1]));
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/*initial fill for lazy malloc*/
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memset (the_data, 0xAA, (size_t)(size[0]*size[1]));
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/* Fill raw */
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synchronize ();
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getrusage (RUSAGE_SELF, &r_start);
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gettimeofday (&t_start, NULL);
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fprintf (stderr, HEADING, "fill raw");
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for (i=0; i<nwrite; i++) {
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putc (PROGRESS, stderr);
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fflush (stderr);
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memset (the_data, 0xAA, (size_t)(size[0]*size[1]));
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}
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getrusage (RUSAGE_SELF, &r_stop);
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gettimeofday (&t_stop, NULL);
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putc ('\n', stderr);
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print_stats ("fill raw",
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&r_start, &r_stop, &t_start, &t_stop,
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(size_t)(nread*size[0]*size[1]));
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/* Fill hdf5 */
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synchronize ();
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getrusage (RUSAGE_SELF, &r_start);
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gettimeofday (&t_start, NULL);
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fprintf (stderr, HEADING, "fill hdf5");
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for (i=0; i<nread; i++) {
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putc (PROGRESS, stderr);
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fflush (stderr);
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status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space,
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H5P_DEFAULT, the_data);
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assert (status>=0);
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}
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getrusage (RUSAGE_SELF, &r_stop);
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gettimeofday (&t_stop, NULL);
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putc ('\n', stderr);
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print_stats ("fill hdf5",
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&r_start, &r_stop, &t_start, &t_stop,
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(size_t)(nread*size[0]*size[1]));
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/* Write the raw dataset */
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synchronize ();
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getrusage (RUSAGE_SELF, &r_start);
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gettimeofday (&t_start, NULL);
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fprintf (stderr, HEADING, "out raw");
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for (i=0; i<nwrite; i++) {
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putc (PROGRESS, stderr);
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fflush (stderr);
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offset = lseek (fd, 0, SEEK_SET);
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assert (0==offset);
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n = write (fd, the_data, (size_t)(size[0]*size[1]));
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assert (n>=0 && (size_t)n==size[0]*size[1]);
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}
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getrusage (RUSAGE_SELF, &r_stop);
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gettimeofday (&t_stop, NULL);
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putc ('\n', stderr);
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print_stats ("out raw",
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&r_start, &r_stop, &t_start, &t_stop,
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(size_t)(nread*size[0]*size[1]));
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/* Write the hdf5 dataset */
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synchronize ();
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getrusage (RUSAGE_SELF, &r_start);
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gettimeofday (&t_start, NULL);
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fprintf (stderr, HEADING, "out hdf5");
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for (i=0; i<nwrite; i++) {
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putc (PROGRESS, stderr);
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fflush (stderr);
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status = H5Dwrite (dset, H5T_NATIVE_UCHAR, H5S_ALL, H5S_ALL,
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H5P_DEFAULT, the_data);
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assert (status>=0);
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}
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getrusage (RUSAGE_SELF, &r_stop);
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gettimeofday (&t_stop, NULL);
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putc ('\n', stderr);
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print_stats ("out hdf5",
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&r_start, &r_stop, &t_start, &t_stop,
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(size_t)(nread*size[0]*size[1]));
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/* Read the raw dataset */
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synchronize ();
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getrusage (RUSAGE_SELF, &r_start);
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gettimeofday (&t_start, NULL);
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fprintf (stderr, HEADING, "in raw");
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for (i=0; i<nread; i++) {
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putc (PROGRESS, stderr);
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fflush (stderr);
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offset = lseek (fd, 0, SEEK_SET);
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assert (0==offset);
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n = read (fd, the_data, (size_t)(size[0]*size[1]));
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assert (n>=0 && (size_t)n==size[0]*size[1]);
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}
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getrusage (RUSAGE_SELF, &r_stop);
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gettimeofday (&t_stop, NULL);
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putc ('\n', stderr);
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print_stats ("in raw",
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&r_start, &r_stop, &t_start, &t_stop,
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(size_t)(nread*size[0]*size[1]));
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/* Read the hdf5 dataset */
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synchronize ();
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getrusage (RUSAGE_SELF, &r_start);
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gettimeofday (&t_start, NULL);
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fprintf (stderr, HEADING, "in hdf5");
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for (i=0; i<nread; i++) {
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putc (PROGRESS, stderr);
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fflush (stderr);
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status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space,
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H5P_DEFAULT, the_data);
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assert (status>=0);
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}
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getrusage (RUSAGE_SELF, &r_stop);
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gettimeofday (&t_stop, NULL);
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putc ('\n', stderr);
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print_stats ("in hdf5",
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&r_start, &r_stop, &t_start, &t_stop,
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(size_t)(nread*size[0]*size[1]));
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/* Read hyperslab */
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assert (size[0]>20 && size[1]>20);
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start[0] = start[1] = 10;
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count[0] = count[1] = size[0]-20;
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status = H5Sset_hyperslab (file_space, start, count, NULL);
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assert (status>=0);
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synchronize ();
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getrusage (RUSAGE_SELF, &r_start);
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gettimeofday (&t_start, NULL);
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fprintf (stderr, HEADING, "in hdf5 partial");
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for (i=0; i<nread; i++) {
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putc (PROGRESS, stderr);
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fflush (stderr);
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status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space,
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H5P_DEFAULT, the_data);
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assert (status>=0);
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}
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getrusage (RUSAGE_SELF, &r_stop);
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gettimeofday (&t_stop, NULL);
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putc ('\n', stderr);
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print_stats ("in hdf5 partial",
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&r_start, &r_stop, &t_start, &t_stop,
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(size_t)(nread*count[0]*count[1]));
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/* Close everything */
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close (fd);
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H5Dclose (dset);
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H5Sclose (file_space);
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H5Fclose (file);
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return 0;
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}
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