mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-09 07:32:32 +08:00
6b45f5172c
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
696 lines
19 KiB
C
696 lines
19 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/* Programmer: Robb Matzke <matzke@llnl.gov>
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* Wednesday, October 15, 1997
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*
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* Purpose: Tests various aspects of indexed raw data storage.
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*/
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#define H5F_PACKAGE /*suppress error about including H5Fpkg */
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#include "h5test.h"
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#include "H5private.h"
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#include "H5Dprivate.h"
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#include "H5Eprivate.h"
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#include "H5Iprivate.h"
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#include "H5Pprivate.h"
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#include "H5Fpkg.h"
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#include "H5Gprivate.h"
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#include "H5Oprivate.h"
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#include "H5Pprivate.h"
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#include "H5Vprivate.h"
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const char *FILENAME[] = {
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"istore",
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NULL
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};
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#define TEST_SMALL 0x0001
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#define TEST_MEDIUM 0x0002
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#define TEST_LARGE 0x0004
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/* The datatype of the dataset operated on by this test */
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#define TEST_DATATYPE H5T_NATIVE_UCHAR
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#define TEST_CHUNK_SIZE 50
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#ifdef H5_HAVE_LARGE_HSIZET
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#define TEST_SPARSE_SIZE 1000000
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#else /* H5_HAVE_LARGE_HSIZET */
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#define TEST_SPARSE_SIZE 1200
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#endif /* H5_HAVE_LARGE_HSIZET */
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hsize_t chunk_dims[H5O_LAYOUT_NDIMS];
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hsize_t zero[H5O_LAYOUT_NDIMS];
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/*-------------------------------------------------------------------------
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* Function: print_array
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*
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* Purpose: Prints the values in an array
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*
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* Return: void
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*
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* Programmer: Robb Matzke
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* Friday, October 10, 1997
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static void
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print_array(uint8_t *array, size_t nx, size_t ny, size_t nz)
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{
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size_t i, j, k;
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for (i = 0; i < nx; i++) {
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if (nz > 1) {
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fprintf(stderr,"i=%lu:\n", (unsigned long)i);
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} else {
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fprintf(stderr,"%03lu:", (unsigned long)i);
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}
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for (j = 0; j < ny; j++) {
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if (nz > 1)
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fprintf(stderr,"%03lu:", (unsigned long)j);
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for (k = 0; k < nz; k++) {
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fprintf(stderr," %3d", *array++);
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}
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if (nz > 1)
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fprintf(stderr,"\n");
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}
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fprintf(stderr,"\n");
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}
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}
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/*-------------------------------------------------------------------------
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* Function: new_object
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*
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* Purpose: Creates a new object that refers to a indexed storage of raw
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* data. No raw data is stored.
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*
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* Return: Success: ID of dataset
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*
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* Failure: -1
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*
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* Programmer: Robb Matzke
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* Wednesday, October 15, 1997
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*
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* Modifications:
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* Converted to use datasets instead of directly messing with
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* the istore routines, etc. since the new raw data architecture
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* performs hyperslab operations at a higher level than the
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* istore routines did and the new istore routines can't handle
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* I/O on more than one chunk at a time. QAK - 2003/04/16
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*
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*-------------------------------------------------------------------------
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*/
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static hid_t
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new_object(hid_t f, const char *name, int ndims, hsize_t dims[], hsize_t cdims[])
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{
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hid_t dataset; /* Dataset ID */
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hid_t space; /* Dataspace ID */
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hid_t dcpl; /* Dataset creation property list ID */
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/* Create the dataset creation property list */
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if ((dcpl=H5Pcreate(H5P_DATASET_CREATE))<0) TEST_ERROR;
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/* Set the chunk dimensions */
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if(H5Pset_chunk(dcpl, ndims, cdims) < 0) TEST_ERROR;
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/* Create the dataspace */
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if((space = H5Screate_simple(ndims, dims, NULL))<0) TEST_ERROR;
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/* Create the dataset */
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if((dataset = H5Dcreate (f, name, TEST_DATATYPE, space, dcpl))<0) TEST_ERROR;
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/* Clean up */
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/* Close property lists */
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if(H5Pclose(dcpl)<0) TEST_ERROR;
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/* Close dataspace */
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if(H5Sclose(space)<0) TEST_ERROR;
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return dataset;
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error:
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return -1;
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}
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/*-------------------------------------------------------------------------
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* Function: test_create
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*
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* Purpose: Creates a named object that refers to indexed storage of raw
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* data. No raw data is stored.
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*
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* Return: Success: SUCCEED
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*
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* Failure: FAIL
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*
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* Programmer: Robb Matzke
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* Wednesday, October 15, 1997
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static herr_t
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test_create(hid_t f, const char *prefix)
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{
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hid_t dataset; /* Dataset ID */
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hsize_t dims[H5O_LAYOUT_NDIMS+1]; /* Dimensions of dataset */
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char name[256]; /* Dataset name */
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unsigned u; /* Local index variable */
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TESTING("istore create");
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dims[0]=TEST_CHUNK_SIZE;
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for (u = 1; u <= H5S_MAX_RANK; u++) {
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/* Initialize the dimension size in this new dimension */
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dims[u]=TEST_CHUNK_SIZE;
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/* Create chunked dataset of this dimensionality */
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HDsnprintf(name, sizeof name, "%s_%02u", prefix, u);
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if ((dataset=new_object(f, name, (int)u, dims, chunk_dims)) < 0)
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return FAIL;
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/* Close dataset created */
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if(H5Dclose(dataset)<0)
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return FAIL;
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}
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PASSED();
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return SUCCEED;
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}
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/*-------------------------------------------------------------------------
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* Function: test_extend
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*
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* Purpose: Creates an empty object and then writes to it in such a way
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* as to always extend the object's domain without creating
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* holes and without causing the object to become concave.
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*
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* Return: Success: SUCCEED
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*
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* Failure: FAIL
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*
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* Programmer: Robb Matzke
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* Wednesday, October 15, 1997
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static herr_t
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test_extend(hid_t f, const char *prefix,
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size_t nx, size_t ny, size_t nz)
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{
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hid_t dataset; /* Dataset ID */
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hid_t fspace; /* Dataset's file dataspace */
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hid_t mspace; /* Dataset's memory dataspace */
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hsize_t i, j, k, ctr;
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int ndims;
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uint8_t *buf = NULL, *check = NULL, *whole = NULL;
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char dims[64], s[256], name[256];
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hsize_t offset[3];
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hsize_t max_corner[3];
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hsize_t size[3];
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hsize_t whole_size[3];
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hsize_t nelmts;
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if (!nz) {
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if (!ny) {
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ndims = 1;
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ny = nz = 1;
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sprintf(dims, "%lu", (unsigned long) nx);
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} else {
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ndims = 2;
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nz = 1;
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sprintf(dims, "%lux%lu", (unsigned long) nx, (unsigned long) ny);
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}
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} else {
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ndims = 3;
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sprintf(dims, "%lux%lux%lu",
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(unsigned long) nx, (unsigned long) ny, (unsigned long) nz);
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}
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sprintf(s, "istore extend: %s", dims);
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TESTING(s);
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buf = HDmalloc(nx * ny * nz);
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check = HDmalloc(nx * ny * nz);
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whole = HDcalloc(1,nx*ny*nz);
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whole_size[0] = nx;
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whole_size[1] = ny;
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whole_size[2] = nz;
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max_corner[0] = 0;
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max_corner[1] = 0;
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max_corner[2] = 0;
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/* Build the new empty object */
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sprintf(name, "%s_%s", prefix, dims);
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if ((dataset=new_object(f, name, ndims, whole_size, whole_size)) < 0) {
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fprintf(stderr," Cannot create %u-d object `%s'\n", ndims, name);
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goto error;
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}
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/* Get dataset's dataspace */
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if((fspace=H5Dget_space(dataset))<0) TEST_ERROR;
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for (ctr = 0;
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H5V_vector_lt_u((unsigned)ndims, max_corner, whole_size);
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ctr++) {
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/* Size and location */
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if (0 == ctr) {
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offset[0] = offset[1] = offset[2] = 0;
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size[0] = size[1] = size[2] = 1;
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nelmts = 1;
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} else {
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for (i=0, nelmts=1; i<(size_t)ndims; i++) {
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if (ctr % ndims == i) {
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offset[i] = max_corner[i];
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size[i] = MIN(1, whole_size[i] - offset[i]);
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} else {
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offset[i] = 0;
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size[i] = max_corner[i];
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}
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nelmts *= size[i];
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}
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}
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#if 0
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if (0 == ctr)
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fprintf(stderr,"\n");
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fprintf(stderr," Insert: ctr=%lu, corner=(%ld", (unsigned long)ctr, (long)offset[0]);
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if (ndims > 1)
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fprintf(stderr,",%ld", (long)offset[1]);
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if (ndims > 2)
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fprintf(stderr,",%ld", (long)offset[2]);
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fprintf(stderr,"), size=(%lu", (unsigned long)size[0]);
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if (ndims > 1)
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fprintf(stderr,",%lu", (unsigned long)size[1]);
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if (ndims > 2)
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fprintf(stderr,",%lu", (unsigned long)size[2]);
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fprintf(stderr,"), %lu element%s", (unsigned long)nelmts, 1 == nelmts ? "" : "s");
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if (0 == nelmts)
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fprintf(stderr," *SKIPPED*");
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fprintf(stderr,"\n");
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#endif
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/* Fill the source array */
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if (0 == nelmts) continue;
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HDmemset(buf, (signed)(128+ctr), (size_t)nelmts);
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/* Create dataspace for selection in memory */
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if((mspace=H5Screate_simple(1,&nelmts,NULL))<0) TEST_ERROR;
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/* Select region in file dataspace */
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if(H5Sselect_hyperslab(fspace,H5S_SELECT_SET,offset,NULL,size,NULL)<0) TEST_ERROR;
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/* Write to disk */
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if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf)<0) {
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H5_FAILED();
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fprintf(stderr," Write failed: ctr=%lu\n", (unsigned long)ctr);
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goto error;
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}
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/* Read from disk */
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HDmemset(check, 0xff, (size_t)nelmts);
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if (H5Dread(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, check)<0) {
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H5_FAILED();
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fprintf(stderr," Read failed: ctr=%lu\n", (unsigned long)ctr);
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goto error;
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}
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if (HDmemcmp(buf, check, (size_t)nelmts)) {
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H5_FAILED();
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fprintf(stderr," Read check failed: ctr=%lu\n", (unsigned long)ctr);
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fprintf(stderr," Wrote:\n");
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print_array(buf, (size_t)size[0], (size_t)size[1],
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(size_t)size[2]);
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fprintf(stderr," Read:\n");
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print_array(check, (size_t)size[0], (size_t)size[1],
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(size_t)size[2]);
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goto error;
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}
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/* Close memory dataspace */
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if(H5Sclose(mspace)<0) TEST_ERROR;
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/* Write to `whole' buffer for later checking */
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H5V_hyper_copy((unsigned)ndims, size,
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whole_size, offset, whole, /*dst*/
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size, H5V_ZERO, buf); /*src*/
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/* Update max corner */
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for (i=0; i<(size_t)ndims; i++)
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max_corner[i] = MAX(max_corner[i], offset[i]+size[i]);
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}
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/* Now read the entire array back out and check it */
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HDmemset(buf, 0xff, nx * ny * nz);
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if (H5Dread(dataset, TEST_DATATYPE, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)<0) {
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H5_FAILED();
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fprintf(stderr," Read failed for whole array.\n");
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goto error;
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}
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for (i=0; i<nx; i++) {
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for (j=0; j<ny; j++) {
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for (k=0; k<nz; k++) {
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if (whole[i*ny*nz + j*nz + k] != buf[i*ny*nz + j*nz + k]) {
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H5_FAILED();
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fprintf(stderr," Check failed at i=%lu", (unsigned long)i);
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if (ndims > 1) {
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fprintf(stderr,", j=%lu", (unsigned long)j);
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}
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if (ndims > 2) {
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fprintf(stderr,", k=%lu", (unsigned long)k);
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}
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fprintf(stderr,"\n Check array is:\n");
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print_array(whole, nx, ny, nz);
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fprintf(stderr," Value read is:\n");
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print_array(buf, nx, ny, nz);
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goto error;
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}
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}
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}
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}
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/* Close dataset's dataspace */
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if(H5Sclose(fspace)<0) TEST_ERROR;
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/* Close dataset */
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if(H5Dclose(dataset)<0) TEST_ERROR;
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/* Free memory used */
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HDfree(buf);
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HDfree(check);
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HDfree(whole);
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PASSED();
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return SUCCEED;
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error:
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HDfree(buf);
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HDfree(check);
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HDfree(whole);
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return FAIL;
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}
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/*-------------------------------------------------------------------------
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* Function: test_sparse
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*
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* Purpose: Creates a sparse matrix consisting of NBLOCKS randomly placed
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* blocks each of size NX,NY,NZ.
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*
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* Return: Success: SUCCEED
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*
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* Failure: FAIL
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*
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* Programmer: Robb Matzke
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* Wednesday, October 22, 1997
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static herr_t
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test_sparse(hid_t f, const char *prefix, size_t nblocks,
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size_t nx, size_t ny, size_t nz)
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{
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hid_t dataset; /* Dataset ID */
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hid_t fspace; /* Dataset's file dataspace */
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hid_t mspace; /* Dataset's memory dataspace */
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int ndims;
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hsize_t ctr;
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char dims[64], s[256], name[256];
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hsize_t offset[3];
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hsize_t size[3], total = 0;
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uint8_t *buf = NULL;
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hsize_t whole_size[3]; /* Size of dataset's dataspace */
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size_t u; /* Local index variable */
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if (!nz) {
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if (!ny) {
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ndims = 1;
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ny = nz = 1;
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sprintf(dims, "%lu", (unsigned long) nx);
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} else {
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ndims = 2;
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nz = 1;
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sprintf(dims, "%lux%lu", (unsigned long) nx, (unsigned long) ny);
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}
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} else {
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ndims = 3;
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sprintf(dims, "%lux%lux%lu",
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(unsigned long) nx, (unsigned long) ny, (unsigned long) nz);
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}
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sprintf(s, "istore sparse: %s", dims);
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TESTING(s);
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buf = HDmalloc(nx * ny * nz);
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HDmemset(buf, 128, nx * ny * nz);
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/* Set dimensions of dataset */
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for (u=0; u<(size_t)ndims; u++)
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whole_size[u]=TEST_SPARSE_SIZE;
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/* Set dimensions of selection */
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size[0] = nx;
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size[1] = ny;
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size[2] = nz;
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/* Build the new empty object */
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sprintf(name, "%s_%s", prefix, dims);
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if ((dataset=new_object(f, name, ndims, whole_size, chunk_dims)) < 0) {
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printf(" Cannot create %u-d object `%s'\n", ndims, name);
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goto error;
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}
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/* Get dataset's dataspace */
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if((fspace=H5Dget_space(dataset))<0) TEST_ERROR;
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/* Create dataspace for memory buffer */
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if((mspace=H5Screate_simple(ndims,size,NULL))<0) TEST_ERROR;
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for (ctr=0; ctr<nblocks; ctr++) {
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offset[0] = (hsize_t)(HDrandom() % (TEST_SPARSE_SIZE-nx));
|
||
offset[1] = (hsize_t)(HDrandom() % (TEST_SPARSE_SIZE-ny));
|
||
offset[2] = (hsize_t)(HDrandom() % (TEST_SPARSE_SIZE-nz));
|
||
|
||
/* Select region in file dataspace */
|
||
if(H5Sselect_hyperslab(fspace,H5S_SELECT_SET,offset,NULL,size,NULL)<0) TEST_ERROR;
|
||
|
||
/* write to disk */
|
||
if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf)<0) {
|
||
H5_FAILED();
|
||
printf(" Write failed: ctr=%lu\n", (unsigned long)ctr);
|
||
printf(" offset=(%lu", (unsigned long) (offset[0]));
|
||
if (ndims > 1)
|
||
printf(",%lu", (unsigned long) (offset[1]));
|
||
if (ndims > 2)
|
||
printf(",%lu", (unsigned long) (offset[2]));
|
||
printf("), size=(%lu", (unsigned long) (size[0]));
|
||
if (ndims > 1)
|
||
printf(",%lu", (unsigned long) (size[1]));
|
||
if (ndims > 2)
|
||
printf(",%lu", (unsigned long) (size[2]));
|
||
printf(")\n");
|
||
goto error;
|
||
}
|
||
total += nx * ny * nz;
|
||
#if 0
|
||
HDfprintf(stderr,"ctr: ctr=%Zu, total=%Zu\n", ctr, total);
|
||
#endif
|
||
|
||
/* We don't test reading yet.... */
|
||
}
|
||
|
||
/* Close memory dataspace */
|
||
if(H5Sclose(mspace)<0) TEST_ERROR;
|
||
|
||
/* Close dataset's dataspace */
|
||
if(H5Sclose(fspace)<0) TEST_ERROR;
|
||
|
||
/* Close dataset */
|
||
if(H5Dclose(dataset)<0) TEST_ERROR;
|
||
|
||
HDfree(buf);
|
||
PASSED();
|
||
return SUCCEED;
|
||
|
||
error:
|
||
HDfree(buf);
|
||
return FAIL;
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: main
|
||
*
|
||
* Purpose: Tests indexed storage stuff.
|
||
*
|
||
* Return: Success: exit(0)
|
||
*
|
||
* Failure: exit(non-zero)
|
||
*
|
||
* Programmer: Robb Matzke
|
||
* Wednesday, October 15, 1997
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
int
|
||
main(int argc, char *argv[])
|
||
{
|
||
hid_t fapl=-1, file=-1, fcpl=-1;
|
||
herr_t status;
|
||
int nerrors = 0;
|
||
unsigned size_of_test;
|
||
unsigned u; /* Local index variable */
|
||
char filename[1024];
|
||
|
||
/* Parse arguments or assume these tests (`small', `medium' ) */
|
||
if (1 == argc) {
|
||
size_of_test = TEST_SMALL;
|
||
} else {
|
||
int i;
|
||
for (i = 1, size_of_test = 0; i < argc; i++) {
|
||
if (!strcmp(argv[i], "small")) {
|
||
size_of_test |= TEST_SMALL;
|
||
} else if (!strcmp(argv[i], "medium")) {
|
||
size_of_test |= TEST_MEDIUM;
|
||
} else if (!strcmp(argv[i], "large")) {
|
||
size_of_test |= TEST_LARGE;
|
||
} else {
|
||
printf("unrecognized argument: %s\n", argv[i]);
|
||
#if 0
|
||
exit(1);
|
||
#endif
|
||
}
|
||
}
|
||
}
|
||
printf("Test sizes: ");
|
||
if (size_of_test & TEST_SMALL)
|
||
printf(" SMALL");
|
||
if (size_of_test & TEST_MEDIUM)
|
||
printf(" MEDIUM");
|
||
if (size_of_test & TEST_LARGE)
|
||
printf(" LARGE");
|
||
printf("\n");
|
||
|
||
/* Set the random # seed */
|
||
HDsrandom((unsigned long)HDtime(NULL));
|
||
|
||
/* Reset library */
|
||
h5_reset();
|
||
fapl = h5_fileaccess();
|
||
|
||
/* Use larger file addresses... */
|
||
fcpl = H5Pcreate(H5P_FILE_CREATE);
|
||
H5Pset_sizes(fcpl, 8, 0);
|
||
|
||
/* Create the test file */
|
||
h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
|
||
if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl))<0) {
|
||
printf("Cannot create file %s; test aborted\n", filename);
|
||
exit(1);
|
||
}
|
||
|
||
/*
|
||
* For testing file families, fool the library into thinking it already
|
||
* allocated a whole bunch of data.
|
||
*/
|
||
if (H5FD_FAMILY==H5Pget_driver(fapl)) {
|
||
haddr_t addr;
|
||
H5F_t *f;
|
||
|
||
addr = 8 * ((uint64_t)1<<30); /*8 GB */
|
||
f=H5I_object(file);
|
||
if (H5FDset_eoa(f->shared->lf, addr)<0) {
|
||
printf("Cannot create large file family\n");
|
||
exit(1);
|
||
}
|
||
}
|
||
|
||
/* Initialize chunk dimensions */
|
||
for (u = 0; u < H5O_LAYOUT_NDIMS; u++)
|
||
chunk_dims[u]=TEST_CHUNK_SIZE;
|
||
|
||
/*
|
||
* Creation test: Creates empty objects with various raw data sizes
|
||
* and alignments.
|
||
*/
|
||
status = test_create(file, "create");
|
||
nerrors += status < 0 ? 1 : 0;
|
||
|
||
if (size_of_test & TEST_SMALL) {
|
||
status = test_extend(file, "extend", 10, 0, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_extend(file, "extend", 10, 10, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_extend(file, "extend", 10, 10, 10);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
}
|
||
if (size_of_test & TEST_MEDIUM) {
|
||
status = test_extend(file, "extend", 10000, 0, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_extend(file, "extend", 2500, 10, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_extend(file, "extend", 10, 400, 10);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
}
|
||
if (size_of_test & TEST_SMALL) {
|
||
status = test_sparse(file, "sparse", 100, 5, 0, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_sparse(file, "sparse", 100, 3, 4, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_sparse(file, "sparse", 100, 2, 3, 4);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
}
|
||
if (size_of_test & TEST_MEDIUM) {
|
||
status = test_sparse(file, "sparse", 1000, 30, 0, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_sparse(file, "sparse", 2000, 7, 3, 0);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
status = test_sparse(file, "sparse", 2000, 4, 2, 3);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
}
|
||
if (size_of_test & TEST_LARGE) {
|
||
status = test_sparse(file, "sparse", 800, 50, 50, 50);
|
||
nerrors += status < 0 ? 1 : 0;
|
||
}
|
||
|
||
/* Close the test file and exit */
|
||
H5Pclose(fcpl);
|
||
H5Fclose(file);
|
||
|
||
if (nerrors) {
|
||
printf("***** %d I-STORE TEST%s FAILED! *****\n",
|
||
nerrors, 1 == nerrors ? "" : "S");
|
||
exit(1);
|
||
}
|
||
|
||
printf("All i-store tests passed.\n");
|
||
h5_cleanup(FILENAME, fapl);
|
||
return 0;
|
||
}
|