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f813d1e5ce
* Correct publish path * Update clang-format to 17 (#4931) Also bump the clang-format GitHub actions to 17 * Committing clang-format changes
3279 lines
126 KiB
C
3279 lines
126 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/***********************************************************
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*
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* Test program: tvltypes
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*
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* Test the Variable-Length Datatype functionality
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*
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*************************************************************/
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#include "testhdf5.h"
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#include "H5Dprivate.h"
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#define FILENAME "tvltypes.h5"
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/* 1-D dataset with fixed dimensions */
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#define SPACE1_RANK 1
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#define SPACE1_DIM1 4
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/* 1-D dataset with fixed dimensions */
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#define SPACE3_RANK 1
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#define SPACE3_DIM1 128
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#define L1_INCM 16
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#define L2_INCM 8
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#define L3_INCM 3
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/* 1-D dataset with fixed dimensions */
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#define SPACE4_RANK 1
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#define SPACE4_DIM_SMALL 128
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#define SPACE4_DIM_LARGE (H5D_TEMP_BUF_SIZE / 64)
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void *test_vltypes_alloc_custom(size_t size, void *info);
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void test_vltypes_free_custom(void *mem, void *info);
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/****************************************************************
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**
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** test_vltypes_alloc_custom(): Test VL datatype custom memory
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** allocation routines. This routine just uses malloc to
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** allocate the memory and increments the amount of memory
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** allocated.
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**
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****************************************************************/
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void *
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test_vltypes_alloc_custom(size_t size, void *mem_used)
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{
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void *ret_value; /* Pointer to return */
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const size_t extra = MAX(sizeof(void *), sizeof(size_t)); /* Extra space needed */
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/* (This weird contortion is required on the
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* DEC Alpha to keep the alignment correct - QAK)
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*/
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if ((ret_value = malloc(extra + size)) != NULL) {
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*(size_t *)ret_value = size;
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*(size_t *)mem_used += size;
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} /* end if */
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ret_value = ((unsigned char *)ret_value) + extra;
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return (ret_value);
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}
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/****************************************************************
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**
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** test_vltypes_free_custom(): Test VL datatype custom memory
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** allocation routines. This routine just uses free to
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** release the memory and decrements the amount of memory
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** allocated.
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**
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****************************************************************/
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void
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test_vltypes_free_custom(void *_mem, void *mem_used)
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{
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if (_mem) {
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const size_t extra = MAX(sizeof(void *), sizeof(size_t)); /* Extra space needed */
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/* (This weird contortion is required
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* on the DEC Alpha to keep the
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* alignment correct - QAK)
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*/
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unsigned char *mem = ((unsigned char *)_mem) - extra; /* Pointer to actual block allocated */
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*(size_t *)mem_used -= *(size_t *)((void *)mem);
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free(mem);
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} /* end if */
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}
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/****************************************************************
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**
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** test_vltypes_data_create(): Dataset of VL is supposed to
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** fail when fill value is never written to dataset.
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**
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****************************************************************/
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static void
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test_vltypes_dataset_create(void)
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{
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hid_t fid1; /* HDF5 File IDs */
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hid_t dcpl; /* Dataset Property list */
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hid_t dataset; /* Dataset ID */
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hsize_t dims1[] = {SPACE1_DIM1};
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hid_t sid1; /* Dataspace ID */
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hid_t tid1; /* Datatype ID */
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herr_t ret; /* Generic return value */
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/* Output message about test being performed */
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MESSAGE(5, ("Testing Dataset of VL Datatype Functionality\n"));
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/* Create file */
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fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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CHECK(fid1, FAIL, "H5Fcreate");
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/* Create dataspace for datasets */
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sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
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CHECK(sid1, FAIL, "H5Screate_simple");
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/* Create a datatype to refer to */
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tid1 = H5Tvlen_create(H5T_NATIVE_UINT);
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CHECK(tid1, FAIL, "H5Tvlen_create");
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/* Create dataset property list */
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dcpl = H5Pcreate(H5P_DATASET_CREATE);
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CHECK(dcpl, FAIL, "H5Pcreate");
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/* Set fill value writing time to be NEVER */
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ret = H5Pset_fill_time(dcpl, H5D_FILL_TIME_NEVER);
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CHECK(ret, FAIL, "H5Pset_fill_time");
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/* Create a dataset, supposed to fail */
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H5E_BEGIN_TRY
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{
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dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, dcpl, H5P_DEFAULT);
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}
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H5E_END_TRY
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VERIFY(dataset, FAIL, "H5Dcreate2");
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/* Close datatype */
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ret = H5Tclose(tid1);
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CHECK(ret, FAIL, "H5Tclose");
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/* Close disk dataspace */
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ret = H5Sclose(sid1);
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CHECK(ret, FAIL, "H5Sclose");
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/* Close dataset transfer property list */
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ret = H5Pclose(dcpl);
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CHECK(ret, FAIL, "H5Pclose");
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/* Close file */
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ret = H5Fclose(fid1);
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CHECK(ret, FAIL, "H5Fclose");
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}
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/****************************************************************
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**
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** test_vltypes_funcs(): Test some type functions that are and
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** aren't supposed to work with VL type.
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**
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****************************************************************/
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static void
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test_vltypes_funcs(void)
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{
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hid_t type; /* Datatype ID */
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size_t size;
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H5T_pad_t inpad;
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H5T_norm_t norm;
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H5T_cset_t cset;
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H5T_str_t strpad;
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herr_t ret; /* Generic return value */
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/* Output message about test being performed */
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MESSAGE(5, ("Testing some type functions for VL\n"));
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/* Create a datatype to refer to */
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type = H5Tvlen_create(H5T_IEEE_F32BE);
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CHECK(type, FAIL, "H5Tvlen_create");
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size = H5Tget_precision(type);
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CHECK(size, 0, "H5Tget_precision");
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size = H5Tget_size(type);
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CHECK(size, 0, "H5Tget_size");
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size = H5Tget_ebias(type);
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CHECK(size, 0, "H5Tget_ebias");
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ret = H5Tset_pad(type, H5T_PAD_ZERO, H5T_PAD_ONE);
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CHECK(ret, FAIL, "H5Tset_pad");
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inpad = H5Tget_inpad(type);
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CHECK(inpad, FAIL, "H5Tget_inpad");
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norm = H5Tget_norm(type);
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CHECK(norm, FAIL, "H5Tget_norm");
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ret = H5Tset_offset(type, (size_t)16);
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CHECK(ret, FAIL, "H5Tset_offset");
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H5E_BEGIN_TRY
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{
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cset = H5Tget_cset(type);
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}
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H5E_END_TRY
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VERIFY(cset, FAIL, "H5Tget_cset");
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H5E_BEGIN_TRY
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{
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strpad = H5Tget_strpad(type);
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}
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H5E_END_TRY
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VERIFY(strpad, FAIL, "H5Tget_strpad");
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/* Close datatype */
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ret = H5Tclose(type);
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CHECK(ret, FAIL, "H5Tclose");
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}
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/****************************************************************
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**
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** test_vltypes_vlen_atomic(): Test basic VL datatype code.
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** Tests VL datatypes of atomic datatypes
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**
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****************************************************************/
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static void
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test_vltypes_vlen_atomic(void)
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{
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hvl_t wdata[SPACE1_DIM1]; /* Information to write */
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hvl_t wdata2[SPACE1_DIM1]; /* Information to write */
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hvl_t rdata[SPACE1_DIM1]; /* Information read in */
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hvl_t fill; /* Fill value */
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hid_t fid1; /* HDF5 File IDs */
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hid_t dataset; /* Dataset ID */
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hid_t sid1; /* Dataspace ID */
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hid_t sid2; /* ID of bad dataspace (no extent set) */
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hid_t tid1; /* Datatype ID */
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hid_t dcpl_pid; /* Dataset creation property list ID */
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hid_t xfer_pid; /* Dataset transfer property list ID */
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hsize_t dims1[] = {SPACE1_DIM1};
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hsize_t size; /* Number of bytes which will be used */
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unsigned i, j; /* counting variables */
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size_t mem_used = 0; /* Memory used during allocation */
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herr_t ret; /* Generic return value */
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/* Output message about test being performed */
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MESSAGE(5, ("Testing Basic Atomic VL Datatype Functionality\n"));
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/* Allocate and initialize VL data to write */
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for (i = 0; i < SPACE1_DIM1; i++) {
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wdata[i].p = malloc((i + 1) * sizeof(unsigned int));
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wdata[i].len = i + 1;
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for (j = 0; j < (i + 1); j++)
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((unsigned int *)wdata[i].p)[j] = i * 10 + j;
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wdata2[i].p = NULL;
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wdata2[i].len = 0;
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} /* end for */
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/* Create file */
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fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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CHECK(fid1, FAIL, "H5Fcreate");
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/* Create dataspace for datasets */
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sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
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CHECK(sid1, FAIL, "H5Screate_simple");
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/* Create a datatype to refer to */
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tid1 = H5Tvlen_create(H5T_NATIVE_UINT);
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CHECK(tid1, FAIL, "H5Tvlen_create");
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/* Create a dataset */
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dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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CHECK(dataset, FAIL, "H5Dcreate2");
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/* Read from dataset before writing data */
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ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
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CHECK(ret, FAIL, "H5Dread");
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/* Check data read in */
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for (i = 0; i < SPACE1_DIM1; i++)
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if (rdata[i].len != 0 || rdata[i].p != NULL)
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TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i,
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(unsigned)rdata[i].len, (int)i, rdata[i].p);
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/* Write "nil" data to disk */
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ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2);
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CHECK(ret, FAIL, "H5Dwrite");
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/* Read from dataset with "nil" data */
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ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
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CHECK(ret, FAIL, "H5Dread");
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/* Check data read in */
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for (i = 0; i < SPACE1_DIM1; i++)
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if (rdata[i].len != 0 || rdata[i].p != NULL)
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TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i,
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(unsigned)rdata[i].len, (int)i, rdata[i].p);
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/* Write dataset to disk */
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ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
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CHECK(ret, FAIL, "H5Dwrite");
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/* Close Dataset */
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ret = H5Dclose(dataset);
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CHECK(ret, FAIL, "H5Dclose");
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/* Create second dataset, with fill value */
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dcpl_pid = H5Pcreate(H5P_DATASET_CREATE);
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CHECK(dcpl_pid, FAIL, "H5Pcreate");
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/* Set the fill value for the second dataset */
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fill.p = NULL;
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fill.len = 0;
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ret = H5Pset_fill_value(dcpl_pid, tid1, &fill);
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CHECK(ret, FAIL, "H5Pset_fill_value");
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/* Create a second dataset */
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dataset = H5Dcreate2(fid1, "Dataset2", tid1, sid1, H5P_DEFAULT, dcpl_pid, H5P_DEFAULT);
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CHECK(dataset, FAIL, "H5Dcreate2");
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/* Close dataset creation property list */
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ret = H5Pclose(dcpl_pid);
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CHECK(ret, FAIL, "H5Pclose");
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/* Read from dataset before writing data */
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ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
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CHECK(ret, FAIL, "H5Dread");
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/* Check data read in */
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for (i = 0; i < SPACE1_DIM1; i++)
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if (rdata[i].len != 0 || rdata[i].p != NULL)
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TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i,
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(unsigned)rdata[i].len, (int)i, rdata[i].p);
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/* Write "nil" data to disk */
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ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2);
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CHECK(ret, FAIL, "H5Dwrite");
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/* Read from dataset with "nil" data */
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ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
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CHECK(ret, FAIL, "H5Dread");
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/* Check data read in */
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for (i = 0; i < SPACE1_DIM1; i++)
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if (rdata[i].len != 0 || rdata[i].p != NULL)
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TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i,
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(unsigned)rdata[i].len, (int)i, rdata[i].p);
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/* Write data to disk */
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ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
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CHECK(ret, FAIL, "H5Dwrite");
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/* Close Dataset */
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ret = H5Dclose(dataset);
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CHECK(ret, FAIL, "H5Dclose");
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/* Close datatype */
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ret = H5Tclose(tid1);
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CHECK(ret, FAIL, "H5Tclose");
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/* Close disk dataspace */
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ret = H5Sclose(sid1);
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CHECK(ret, FAIL, "H5Sclose");
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/* Close file */
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ret = H5Fclose(fid1);
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CHECK(ret, FAIL, "H5Fclose");
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/* Open the file for data checking */
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fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
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CHECK(fid1, FAIL, "H5Fopen");
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/* Open a dataset */
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dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
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CHECK(dataset, FAIL, "H5Dopen2");
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/* Get dataspace for datasets */
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sid1 = H5Dget_space(dataset);
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CHECK(sid1, FAIL, "H5Dget_space");
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/* Get datatype for dataset */
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tid1 = H5Dget_type(dataset);
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CHECK(tid1, FAIL, "H5Dget_type");
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/* Change to the custom memory allocation routines for reading VL data */
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xfer_pid = H5Pcreate(H5P_DATASET_XFER);
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CHECK(xfer_pid, FAIL, "H5Pcreate");
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ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
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&mem_used);
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CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
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/* Make certain the correct amount of memory will be used */
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ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size);
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CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
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/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
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VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dvlen_get_buf_size");
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/* Read dataset from disk */
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ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata);
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CHECK(ret, FAIL, "H5Dread");
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/* Make certain the correct amount of memory has been used */
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/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
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VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dread");
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/* Compare data read in */
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for (i = 0; i < SPACE1_DIM1; i++) {
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if (wdata[i].len != rdata[i].len) {
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TestErrPrintf("%d: VL data lengths don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
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(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
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continue;
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} /* end if */
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for (j = 0; j < rdata[i].len; j++) {
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if (((unsigned int *)wdata[i].p)[j] != ((unsigned int *)rdata[i].p)[j]) {
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TestErrPrintf("VL data values don't match!, wdata[%d].p[%d]=%d, rdata[%d].p[%d]=%d\n", (int)i,
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(int)j, (int)((unsigned int *)wdata[i].p)[j], (int)i, (int)j,
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(int)((unsigned int *)rdata[i].p)[j]);
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continue;
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} /* end if */
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} /* end for */
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} /* end for */
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/* Reclaim the read VL data */
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ret = H5Treclaim(tid1, sid1, xfer_pid, rdata);
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CHECK(ret, FAIL, "H5Treclaim");
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/* Make certain the VL memory has been freed */
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VERIFY(mem_used, 0, "H5Treclaim");
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/* Close Dataset */
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ret = H5Dclose(dataset);
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CHECK(ret, FAIL, "H5Dclose");
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/* Close datatype */
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ret = H5Tclose(tid1);
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CHECK(ret, FAIL, "H5Tclose");
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/* Close disk dataspace */
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ret = H5Sclose(sid1);
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CHECK(ret, FAIL, "H5Sclose");
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/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Open second dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset2", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Get dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Get datatype for dataset */
|
|
tid1 = H5Dget_type(dataset);
|
|
CHECK(tid1, FAIL, "H5Dget_type");
|
|
|
|
/* Create a "bad" dataspace with no extent set */
|
|
sid2 = H5Screate(H5S_SIMPLE);
|
|
CHECK(sid2, FAIL, "H5Screate");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory will be used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dvlen_get_buf_size");
|
|
|
|
/* Try to call H5Dvlen_get_buf with bad dataspace */
|
|
H5E_BEGIN_TRY
|
|
{
|
|
ret = H5Dvlen_get_buf_size(dataset, tid1, sid2, &size);
|
|
}
|
|
H5E_END_TRY
|
|
VERIFY(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* Try to call H5Dvlen_get_buf_size with a wrong ID */
|
|
H5E_BEGIN_TRY
|
|
{
|
|
ret = H5Dvlen_get_buf_size(tid1, dataset, sid2, &size); /* IDs in wrong order */
|
|
}
|
|
H5E_END_TRY
|
|
VERIFY(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* Try to call H5Dvlen_get_buf_size with a wrong ID */
|
|
H5E_BEGIN_TRY
|
|
{
|
|
ret = H5Dvlen_get_buf_size(fid1, tid1, sid2, &size); /* not a dataset ID */
|
|
}
|
|
H5E_END_TRY
|
|
VERIFY(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].len != rdata[i].len) {
|
|
TestErrPrintf("%d: VL data lengths don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
|
|
(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
|
|
continue;
|
|
} /* end if */
|
|
for (j = 0; j < rdata[i].len; j++) {
|
|
if (((unsigned int *)wdata[i].p)[j] != ((unsigned int *)rdata[i].p)[j]) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].p[%d]=%d, rdata[%d].p[%d]=%d\n", (int)i,
|
|
(int)j, (int)((unsigned int *)wdata[i].p)[j], (int)i, (int)j,
|
|
(int)((unsigned int *)rdata[i].p)[j]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Try to reclaim read data using "bad" dataspace with no extent
|
|
* Should fail */
|
|
H5E_BEGIN_TRY
|
|
{
|
|
ret = H5Treclaim(tid1, sid2, xfer_pid, rdata);
|
|
}
|
|
H5E_END_TRY
|
|
VERIFY(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Reclaim the read VL data */
|
|
ret = H5Treclaim(tid1, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end test_vltypes_vlen_atomic() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** rewrite_vltypes_vlen_atomic(): check memory leak for basic VL datatype.
|
|
** Check memory leak for VL datatypes of atomic datatypes
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
rewrite_vltypes_vlen_atomic(void)
|
|
{
|
|
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
|
|
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid1; /* Datatype ID */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
unsigned increment = 4;
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Check Memory Leak for Basic Atomic VL Datatype Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].p = malloc((i + increment) * sizeof(unsigned int));
|
|
wdata[i].len = i + increment;
|
|
for (j = 0; j < (i + increment); j++)
|
|
((unsigned int *)wdata[i].p)[j] = i * 20 + j;
|
|
} /* end for */
|
|
|
|
/* Open file created in test_vltypes_vlen_atomic() */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open the dataset created in test_vltypes_vlen_atomic() */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Open dataspace for dataset */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Get datatype for dataset */
|
|
tid1 = H5Dget_type(dataset);
|
|
CHECK(tid1, FAIL, "H5Dget_type");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Open the file for data checking */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open a dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Get dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Get datatype for dataset */
|
|
tid1 = H5Dget_type(dataset);
|
|
CHECK(tid1, FAIL, "H5Dget_type");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory will be used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 22 elements allocated = 4+5+6+7 elements for each array position */
|
|
VERIFY(size, 22 * sizeof(unsigned int), "H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 22 elements allocated = 4+5+6+7 elements for each array position */
|
|
VERIFY(mem_used, 22 * sizeof(unsigned int), "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].len != rdata[i].len) {
|
|
TestErrPrintf("%d: VL data lengths don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
|
|
(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
|
|
continue;
|
|
} /* end if */
|
|
for (j = 0; j < rdata[i].len; j++) {
|
|
if (((unsigned int *)wdata[i].p)[j] != ((unsigned int *)rdata[i].p)[j]) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].p[%d]=%d, rdata[%d].p[%d]=%d\n", (int)i,
|
|
(int)j, (int)((unsigned int *)wdata[i].p)[j], (int)i, (int)j,
|
|
(int)((unsigned int *)rdata[i].p)[j]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the read VL data */
|
|
ret = H5Treclaim(tid1, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end rewrite_vltypes_vlen_atomic() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** test_vltypes_vlen_compound(): Test basic VL datatype code.
|
|
** Test VL datatypes of compound datatypes
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
test_vltypes_vlen_compound(void)
|
|
{
|
|
typedef struct { /* Struct that the VL sequences are composed of */
|
|
int i;
|
|
float f;
|
|
} s1;
|
|
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
|
|
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid1, tid2; /* Datatype IDs */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hsize_t dims1[] = {SPACE1_DIM1};
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Testing Basic Compound VL Datatype Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].p = malloc((i + 1) * sizeof(s1));
|
|
wdata[i].len = i + 1;
|
|
for (j = 0; j < (i + 1); j++) {
|
|
((s1 *)wdata[i].p)[j].i = (int)(i * 10 + j);
|
|
((s1 *)wdata[i].p)[j].f = (float)(i * 20 + j) / 3.0F;
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Create file */
|
|
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fcreate");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
|
CHECK(sid1, FAIL, "H5Screate_simple");
|
|
|
|
/* Create the base compound type */
|
|
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
|
|
CHECK(tid2, FAIL, "H5Tcreate");
|
|
|
|
/* Insert fields */
|
|
ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Create a datatype to refer to */
|
|
tid1 = H5Tvlen_create(tid2);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create a dataset */
|
|
dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dcreate2");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory will be used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(s1), "H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(s1), "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].len != rdata[i].len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
|
|
(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
|
|
continue;
|
|
} /* end if */
|
|
for (j = 0; j < rdata[i].len; j++) {
|
|
if (((s1 *)wdata[i].p)[j].i != ((s1 *)rdata[i].p)[j].i) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].i=%d, rdata[%d].p[%d].i=%d\n",
|
|
(int)i, (int)j, (int)((s1 *)wdata[i].p)[j].i, (int)i, (int)j,
|
|
(int)((s1 *)rdata[i].p)[j].i);
|
|
continue;
|
|
} /* end if */
|
|
if (!H5_FLT_ABS_EQUAL(((s1 *)wdata[i].p)[j].f, ((s1 *)rdata[i].p)[j].f)) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].f=%f, rdata[%d].p[%d].f=%f\n",
|
|
(int)i, (int)j, (double)((s1 *)wdata[i].p)[j].f, (int)i, (int)j,
|
|
(double)((s1 *)rdata[i].p)[j].f);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid1, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end test_vltypes_vlen_compound() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** rewrite_vltypes_vlen_compound(): Check memory leak for basic VL datatype.
|
|
** Checks memory leak for VL datatypes of compound datatypes
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
rewrite_vltypes_vlen_compound(void)
|
|
{
|
|
typedef struct { /* Struct that the VL sequences are composed of */
|
|
int i;
|
|
float f;
|
|
} s1;
|
|
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
|
|
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid1, tid2; /* Datatype IDs */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
unsigned increment = 4;
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Check Memory Leak for Basic Compound VL Datatype Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].p = malloc((i + increment) * sizeof(s1));
|
|
wdata[i].len = i + increment;
|
|
for (j = 0; j < (i + increment); j++) {
|
|
((s1 *)wdata[i].p)[j].i = (int)(i * 40 + j);
|
|
((s1 *)wdata[i].p)[j].f = (float)(i * 60 + j) / 3.0F;
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Create file */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Create the base compound type */
|
|
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
|
|
CHECK(tid2, FAIL, "H5Tcreate");
|
|
|
|
ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Create a datatype to refer to */
|
|
tid1 = H5Tvlen_create(tid2);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create a dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory will be used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 22 elements allocated = 4 + 5 + 6 + 7 elements for each array position */
|
|
VERIFY(size, 22 * sizeof(s1), "H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 22 elements allocated = 4 + 5 + 6 + 7 elements for each array position */
|
|
VERIFY(mem_used, 22 * sizeof(s1), "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].len != rdata[i].len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
|
|
(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
|
|
continue;
|
|
} /* end if */
|
|
for (j = 0; j < rdata[i].len; j++) {
|
|
if (((s1 *)wdata[i].p)[j].i != ((s1 *)rdata[i].p)[j].i) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].i=%d, rdata[%d].p[%d].i=%d\n",
|
|
(int)i, (int)j, (int)((s1 *)wdata[i].p)[j].i, (int)i, (int)j,
|
|
(int)((s1 *)rdata[i].p)[j].i);
|
|
continue;
|
|
} /* end if */
|
|
if (!H5_FLT_ABS_EQUAL(((s1 *)wdata[i].p)[j].f, ((s1 *)rdata[i].p)[j].f)) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].f=%f, rdata[%d].p[%d].f=%f\n",
|
|
(int)i, (int)j, (double)((s1 *)wdata[i].p)[j].f, (int)i, (int)j,
|
|
(double)((s1 *)rdata[i].p)[j].f);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid1, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end rewrite_vltypes_vlen_compound() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** test_vltypes_compound_vlen_vlen(): Test basic VL datatype code.
|
|
** Tests compound datatypes with VL datatypes of VL datatypes.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
test_vltypes_compound_vlen_vlen(void)
|
|
{
|
|
typedef struct { /* Struct that the compound type are composed of */
|
|
int i;
|
|
float f;
|
|
hvl_t v;
|
|
} s1;
|
|
s1 *wdata; /* data to write */
|
|
s1 *rdata; /* data to read */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid1, tid2, tid3; /* Datatype IDs */
|
|
hsize_t dims1[] = {SPACE3_DIM1};
|
|
unsigned i, j, k; /* counting variables */
|
|
hvl_t *t1, *t2; /* Temporary pointer to VL information */
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Testing Compound Datatypes with VL Atomic Datatype Component Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
wdata = (s1 *)malloc(sizeof(s1) * SPACE3_DIM1);
|
|
CHECK_PTR(wdata, "malloc");
|
|
rdata = (s1 *)malloc(sizeof(s1) * SPACE3_DIM1);
|
|
CHECK_PTR(rdata, "malloc");
|
|
for (i = 0; i < SPACE3_DIM1; i++) {
|
|
wdata[i].i = (int)(i * 10);
|
|
wdata[i].f = (float)(i * 20) / 3.0F;
|
|
wdata[i].v.p = malloc((i + L1_INCM) * sizeof(hvl_t));
|
|
wdata[i].v.len = i + L1_INCM;
|
|
for (t1 = (hvl_t *)((wdata[i].v).p), j = 0; j < (i + L1_INCM); j++, t1++) {
|
|
t1->p = malloc((j + L2_INCM) * sizeof(unsigned int));
|
|
t1->len = j + L2_INCM;
|
|
for (k = 0; k < j + L2_INCM; k++)
|
|
((unsigned int *)t1->p)[k] = i * 100 + j * 10 + k;
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Create file */
|
|
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fcreate");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Screate_simple(SPACE3_RANK, dims1, NULL);
|
|
CHECK(sid1, FAIL, "H5Screate_simple");
|
|
|
|
/* Create a VL datatype to refer to */
|
|
tid3 = H5Tvlen_create(H5T_NATIVE_UINT);
|
|
CHECK(tid3, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create a VL datatype to refer to */
|
|
tid1 = H5Tvlen_create(tid3);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create the base compound type */
|
|
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
|
|
CHECK(tid2, FAIL, "H5Tcreate");
|
|
|
|
/* Insert fields */
|
|
ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Create a dataset */
|
|
dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dcreate2");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Open file */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open a dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE3_DIM1; i++) {
|
|
if (wdata[i].i != rdata[i].i) {
|
|
TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i,
|
|
(int)wdata[i].i, (int)i, (int)rdata[i].i);
|
|
continue;
|
|
} /* end if */
|
|
if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) {
|
|
TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i,
|
|
(double)wdata[i].f, (int)i, (double)rdata[i].f);
|
|
continue;
|
|
} /* end if */
|
|
|
|
if (wdata[i].v.len != rdata[i].v.len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n",
|
|
__LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len);
|
|
continue;
|
|
} /* end if */
|
|
|
|
for (t1 = (hvl_t *)(wdata[i].v.p), t2 = (hvl_t *)(rdata[i].v.p), j = 0; j < rdata[i].v.len;
|
|
j++, t1++, t2++) {
|
|
if (t1->len != t2->len) {
|
|
TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n",
|
|
__LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len);
|
|
continue;
|
|
} /* end if */
|
|
for (k = 0; k < t2->len; k++) {
|
|
if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) {
|
|
TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k,
|
|
(int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid3);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Release buffers */
|
|
free(wdata);
|
|
free(rdata);
|
|
} /* end test_vltypes_compound_vlen_vlen() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** test_vltypes_compound_vlstr(): Test VL datatype code.
|
|
** Tests VL datatypes of compound datatypes with VL string.
|
|
** Dataset is extensible chunked, and data is rewritten with
|
|
** shorter VL data.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
test_vltypes_compound_vlstr(void)
|
|
{
|
|
typedef enum { red, blue, green } e1;
|
|
typedef struct {
|
|
char *string;
|
|
e1 color;
|
|
} s2;
|
|
typedef struct { /* Struct that the compound type are composed of */
|
|
hvl_t v;
|
|
} s1;
|
|
s1 wdata[SPACE1_DIM1]; /* data to write */
|
|
s1 wdata2[SPACE1_DIM1]; /* data to write */
|
|
s1 rdata[SPACE1_DIM1]; /* data to read */
|
|
s1 rdata2[SPACE1_DIM1]; /* data to read */
|
|
char str[64] = "a\0";
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset, dset2; /* Dataset ID */
|
|
hid_t sid1, sid2, filespace, filespace2; /* Dataspace ID */
|
|
hid_t tid1, tid2, tid3, tid4, tid5; /* Datatype IDs */
|
|
hid_t cparms;
|
|
hsize_t dims1[] = {SPACE1_DIM1};
|
|
hsize_t chunk_dims[] = {SPACE1_DIM1 / 2};
|
|
hsize_t maxdims[] = {H5S_UNLIMITED};
|
|
hsize_t size[] = {SPACE1_DIM1};
|
|
hsize_t offset[] = {0};
|
|
unsigned i, j; /* counting variables */
|
|
s2 *t1, *t2; /* Temporary pointer to VL information */
|
|
int val;
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Testing VL Datatype of Compound Datatype with VL String Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].v.p = (s2 *)malloc((i + L3_INCM) * sizeof(s2));
|
|
wdata[i].v.len = i + L3_INCM;
|
|
for (t1 = (s2 *)((wdata[i].v).p), j = 0; j < (i + L3_INCM); j++, t1++) {
|
|
strcat(str, "m");
|
|
t1->string = (char *)malloc(strlen(str) * sizeof(char) + 1);
|
|
strcpy(t1->string, str);
|
|
/*t1->color = red;*/
|
|
t1->color = blue;
|
|
}
|
|
} /* end for */
|
|
|
|
/* Create file */
|
|
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fcreate");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Screate_simple(SPACE1_RANK, dims1, maxdims);
|
|
CHECK(sid1, FAIL, "H5Screate_simple");
|
|
|
|
/* Create a VL string type*/
|
|
tid4 = H5Tcopy(H5T_C_S1);
|
|
CHECK(tid4, FAIL, "H5Tcopy");
|
|
ret = H5Tset_size(tid4, H5T_VARIABLE);
|
|
CHECK(ret, FAIL, "H5Tset_size");
|
|
|
|
/* Create an enum type */
|
|
tid3 = H5Tenum_create(H5T_STD_I32LE);
|
|
val = 0;
|
|
ret = H5Tenum_insert(tid3, "RED", &val);
|
|
CHECK(ret, FAIL, "H5Tenum_insert");
|
|
val = 1;
|
|
ret = H5Tenum_insert(tid3, "BLUE", &val);
|
|
CHECK(ret, FAIL, "H5Tenum_insert");
|
|
val = 2;
|
|
ret = H5Tenum_insert(tid3, "GREEN", &val);
|
|
CHECK(ret, FAIL, "H5Tenum_insert");
|
|
|
|
/* Create the first layer compound type */
|
|
tid5 = H5Tcreate(H5T_COMPOUND, sizeof(s2));
|
|
CHECK(tid5, FAIL, "H5Tcreate");
|
|
/* Insert fields */
|
|
ret = H5Tinsert(tid5, "string", HOFFSET(s2, string), tid4);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
/* Insert fields */
|
|
ret = H5Tinsert(tid5, "enumerate", HOFFSET(s2, color), tid3);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Create a VL datatype of first layer compound type */
|
|
tid1 = H5Tvlen_create(tid5);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create the base compound type */
|
|
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
|
|
CHECK(tid2, FAIL, "H5Tcreate");
|
|
|
|
/* Insert fields */
|
|
ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Modify dataset creation properties, i.e. enable chunking */
|
|
cparms = H5Pcreate(H5P_DATASET_CREATE);
|
|
ret = H5Pset_chunk(cparms, SPACE1_RANK, chunk_dims);
|
|
CHECK(ret, FAIL, "H5Pset_chunk");
|
|
|
|
/* Create a dataset */
|
|
dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, cparms, H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dcreate2");
|
|
|
|
/* Extend the dataset. This call assures that dataset is 4.*/
|
|
ret = H5Dset_extent(dataset, size);
|
|
CHECK(ret, FAIL, "H5Dset_extent");
|
|
|
|
/* Select a hyperslab */
|
|
filespace = H5Dget_space(dataset);
|
|
ret = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL, dims1, NULL);
|
|
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, sid1, filespace, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
ret = H5Fflush(fid1, H5F_SCOPE_GLOBAL);
|
|
CHECK(ret, FAIL, "H5Fflush");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(filespace);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid4);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid5);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid3);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close Property list */
|
|
ret = H5Pclose(cparms);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Open file */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open the dataset */
|
|
dset2 = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dset2, FAIL, "H5Dopen2");
|
|
|
|
/* Get the data type */
|
|
tid2 = H5Dget_type(dset2);
|
|
CHECK(tid2, FAIL, "H5Dget_type");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dset2, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].v.len != rdata[i].v.len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n",
|
|
__LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len);
|
|
continue;
|
|
} /* end if */
|
|
|
|
for (t1 = (s2 *)(wdata[i].v.p), t2 = (s2 *)(rdata[i].v.p), j = 0; j < rdata[i].v.len;
|
|
j++, t1++, t2++) {
|
|
if (strcmp(t1->string, t2->string) != 0) {
|
|
TestErrPrintf("VL data values don't match!, t1->string=%s, t2->string=%s\n", t1->string,
|
|
t2->string);
|
|
continue;
|
|
} /* end if */
|
|
if (t1->color != t2->color) {
|
|
TestErrPrintf("VL data values don't match!, t1->color=%d, t2->color=%d\n", t1->color,
|
|
t2->color);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Use this part for new data */
|
|
strcpy(str, "bbbbbbbb\0");
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata2[i].v.p = (s2 *)malloc((i + 1) * sizeof(s2));
|
|
wdata2[i].v.len = i + 1;
|
|
for (t1 = (s2 *)(wdata2[i].v).p, j = 0; j < i + 1; j++, t1++) {
|
|
strcat(str, "pp");
|
|
t1->string = (char *)malloc(strlen(str) * sizeof(char) + 1);
|
|
strcpy(t1->string, str);
|
|
t1->color = green;
|
|
}
|
|
} /* end for */
|
|
|
|
/* Select a hyperslab */
|
|
filespace2 = H5Dget_space(dset2);
|
|
ret = H5Sselect_hyperslab(filespace2, H5S_SELECT_SET, offset, NULL, dims1, NULL);
|
|
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid2 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
|
CHECK(sid1, FAIL, "H5Screate_simple");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dset2, tid2, sid2, filespace2, H5P_DEFAULT, &wdata2);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dset2, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata2[i].v.len != rdata2[i].v.len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata2[%d].v.len=%d, rdata2[%d].v.len=%d\n",
|
|
__LINE__, (int)i, (int)wdata2[i].v.len, (int)i, (int)rdata2[i].v.len);
|
|
continue;
|
|
} /* end if */
|
|
|
|
for (t1 = (s2 *)(wdata2[i].v.p), t2 = (s2 *)(rdata2[i].v.p), j = 0; j < rdata2[i].v.len;
|
|
j++, t1++, t2++) {
|
|
if (strcmp(t1->string, t2->string) != 0) {
|
|
TestErrPrintf("VL data values don't match!, t1->string=%s, t2->string=%s\n", t1->string,
|
|
t2->string);
|
|
continue;
|
|
} /* end if */
|
|
if (t1->color != t2->color) {
|
|
TestErrPrintf("VL data values don't match!, t1->color=%d, t2->color=%d\n", t1->color,
|
|
t2->color);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata2);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata2);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
ret = H5Dclose(dset2);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid2);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(filespace2);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
} /* end test_vltypes_compound_vlstr() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** test_vltypes_compound_vlen_atomic(): Test basic VL datatype code.
|
|
** Tests compound datatypes with VL datatypes of atomic datatypes.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
test_vltypes_compound_vlen_atomic(void)
|
|
{
|
|
typedef struct { /* Struct that the VL sequences are composed of */
|
|
int i;
|
|
float f;
|
|
hvl_t v;
|
|
} s1;
|
|
s1 wdata[SPACE1_DIM1]; /* Information to write */
|
|
s1 rdata[SPACE1_DIM1]; /* Information read in */
|
|
s1 fill; /* Fill value */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid1, tid2; /* Datatype IDs */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hid_t dcpl_pid; /* Dataset creation property list ID */
|
|
hsize_t dims1[] = {SPACE1_DIM1};
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Testing Compound Datatypes with VL Atomic Datatype Component Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].i = (int)(i * 10);
|
|
wdata[i].f = (float)(i * 20) / 3.0F;
|
|
wdata[i].v.p = malloc((i + 1) * sizeof(unsigned int));
|
|
wdata[i].v.len = i + 1;
|
|
for (j = 0; j < (i + 1); j++)
|
|
((unsigned int *)wdata[i].v.p)[j] = i * 10 + j;
|
|
} /* end for */
|
|
|
|
/* Create file */
|
|
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fcreate");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
|
CHECK(sid1, FAIL, "H5Screate_simple");
|
|
|
|
/* Create a VL datatype to refer to */
|
|
tid1 = H5Tvlen_create(H5T_NATIVE_UINT);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create the base compound type */
|
|
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
|
|
CHECK(tid2, FAIL, "H5Tcreate");
|
|
|
|
/* Insert fields */
|
|
ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Create a dataset */
|
|
dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dcreate2");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory will be used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].i != rdata[i].i) {
|
|
TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i,
|
|
(int)wdata[i].i, (int)i, (int)rdata[i].i);
|
|
continue;
|
|
} /* end if */
|
|
if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) {
|
|
TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i,
|
|
(double)wdata[i].f, (int)i, (double)rdata[i].f);
|
|
continue;
|
|
} /* end if */
|
|
if (wdata[i].v.len != rdata[i].v.len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n",
|
|
__LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len);
|
|
continue;
|
|
} /* end if */
|
|
for (j = 0; j < rdata[i].v.len; j++) {
|
|
if (((unsigned int *)wdata[i].v.p)[j] != ((unsigned int *)rdata[i].v.p)[j]) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].v.p[%d]=%d, rdata[%d].v.p[%d]=%d\n",
|
|
(int)i, (int)j, (int)((unsigned int *)wdata[i].v.p)[j], (int)i, (int)j,
|
|
(int)((unsigned int *)rdata[i].v.p)[j]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid2, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Create a second dataset, with a fill value */
|
|
dcpl_pid = H5Pcreate(H5P_DATASET_CREATE);
|
|
CHECK(dcpl_pid, FAIL, "H5Pcreate");
|
|
|
|
/* Set the fill value for the second dataset */
|
|
memset(&fill, 0, sizeof(s1));
|
|
ret = H5Pset_fill_value(dcpl_pid, tid2, &fill);
|
|
CHECK(ret, FAIL, "H5Pset_fill_value");
|
|
|
|
dataset = H5Dcreate2(fid1, "Dataset2", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dcreate2");
|
|
|
|
/* Close dataset creation property list */
|
|
ret = H5Pclose(dcpl_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Read from dataset before writing data */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Check data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++)
|
|
if (rdata[i].i != 0 || !H5_FLT_ABS_EQUAL(rdata[i].f, 0.0F) || rdata[i].v.len != 0 ||
|
|
rdata[i].v.p != NULL)
|
|
TestErrPrintf(
|
|
"VL doesn't match!, rdata[%d].i=%d, rdata[%d].f=%f, rdata[%d].v.len=%u, rdata[%d].v.p=%p\n",
|
|
(int)i, rdata[i].i, (int)i, (double)rdata[i].f, (int)i, (unsigned)rdata[i].v.len, (int)i,
|
|
rdata[i].v.p);
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].i != rdata[i].i) {
|
|
TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i,
|
|
(int)wdata[i].i, (int)i, (int)rdata[i].i);
|
|
continue;
|
|
} /* end if */
|
|
if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) {
|
|
TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i,
|
|
(double)wdata[i].f, (int)i, (double)rdata[i].f);
|
|
continue;
|
|
} /* end if */
|
|
if (wdata[i].v.len != rdata[i].v.len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n",
|
|
__LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len);
|
|
continue;
|
|
} /* end if */
|
|
for (j = 0; j < rdata[i].v.len; j++) {
|
|
if (((unsigned int *)wdata[i].v.p)[j] != ((unsigned int *)rdata[i].v.p)[j]) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].v.p[%d]=%d, rdata[%d].v.p[%d]=%d\n",
|
|
(int)i, (int)j, (int)((unsigned int *)wdata[i].v.p)[j], (int)i, (int)j,
|
|
(int)((unsigned int *)rdata[i].v.p)[j]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end test_vltypes_compound_vlen_atomic() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** rewrite_vltypes_compound_vlen_atomic(): Check memory leak for
|
|
** basic VL datatype code.
|
|
** Check memory leak for compound datatypes with VL datatypes
|
|
** of atomic datatypes.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
rewrite_vltypes_compound_vlen_atomic(void)
|
|
{
|
|
typedef struct { /* Struct that the VL sequences are composed of */
|
|
int i;
|
|
float f;
|
|
hvl_t v;
|
|
} s1;
|
|
s1 wdata[SPACE1_DIM1]; /* Information to write */
|
|
s1 rdata[SPACE1_DIM1]; /* Information read in */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid1, tid2; /* Datatype IDs */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
unsigned increment = 4;
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5,
|
|
("Checking memory leak for compound datatype with VL Atomic Datatype Component Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].i = (int)(i * 40);
|
|
wdata[i].f = (float)(i * 50) / 3.0F;
|
|
wdata[i].v.p = malloc((i + increment) * sizeof(unsigned int));
|
|
wdata[i].v.len = i + increment;
|
|
for (j = 0; j < (i + increment); j++)
|
|
((unsigned int *)wdata[i].v.p)[j] = i * 60 + j;
|
|
} /* end for */
|
|
|
|
/* Create file */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Create a VL datatype to refer to */
|
|
tid1 = H5Tvlen_create(H5T_NATIVE_UINT);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create the base compound type */
|
|
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
|
|
CHECK(tid2, FAIL, "H5Tcreate");
|
|
|
|
/* Insert fields */
|
|
ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Create a dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory will be used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 22 elements allocated = 4+5+6+7 elements for each array position */
|
|
VERIFY(size, 22 * sizeof(unsigned int), "H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 22 elements allocated = 4+5+6+7 elements for each array position */
|
|
VERIFY(mem_used, 22 * sizeof(unsigned int), "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].i != rdata[i].i) {
|
|
TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i,
|
|
(int)wdata[i].i, (int)i, (int)rdata[i].i);
|
|
continue;
|
|
} /* end if */
|
|
if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) {
|
|
TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i,
|
|
(double)wdata[i].f, (int)i, (double)rdata[i].f);
|
|
continue;
|
|
} /* end if */
|
|
if (wdata[i].v.len != rdata[i].v.len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n",
|
|
__LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len);
|
|
continue;
|
|
} /* end if */
|
|
for (j = 0; j < rdata[i].v.len; j++) {
|
|
if (((unsigned int *)wdata[i].v.p)[j] != ((unsigned int *)rdata[i].v.p)[j]) {
|
|
TestErrPrintf("VL data values don't match!, wdata[%d].v.p[%d]=%d, rdata[%d].v.p[%d]=%d\n",
|
|
(int)i, (int)j, (int)((unsigned int *)wdata[i].v.p)[j], (int)i, (int)j,
|
|
(int)((unsigned int *)rdata[i].v.p)[j]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim the VL data */
|
|
ret = H5Treclaim(tid2, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end rewrite_vltypes_compound_vlen_atomic() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** vlen_size_func(): Test basic VL datatype code.
|
|
** Tests VL datatype with VL datatypes of atomic datatypes.
|
|
**
|
|
****************************************************************/
|
|
static size_t
|
|
vlen_size_func(unsigned long n)
|
|
{
|
|
size_t u = 1;
|
|
size_t tmp = 1;
|
|
size_t result = 1;
|
|
|
|
while (u < n) {
|
|
u++;
|
|
tmp += u;
|
|
result += tmp;
|
|
}
|
|
return (result);
|
|
}
|
|
|
|
/****************************************************************
|
|
**
|
|
** test_vltypes_vlen_vlen_atomic(): Test basic VL datatype code.
|
|
** Tests VL datatype with VL datatypes of atomic datatypes.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
test_vltypes_vlen_vlen_atomic(void)
|
|
{
|
|
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
|
|
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
|
|
hvl_t *t1, *t2; /* Temporary pointer to VL information */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid1, tid2; /* Datatype IDs */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hsize_t dims1[] = {SPACE1_DIM1};
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j, k; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Testing VL Datatypes with VL Atomic Datatype Component Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].p = malloc((i + 1) * sizeof(hvl_t));
|
|
if (wdata[i].p == NULL) {
|
|
TestErrPrintf("Cannot allocate memory for VL data! i=%u\n", i);
|
|
return;
|
|
} /* end if */
|
|
wdata[i].len = i + 1;
|
|
for (t1 = (hvl_t *)(wdata[i].p), j = 0; j < (i + 1); j++, t1++) {
|
|
t1->p = malloc((j + 1) * sizeof(unsigned int));
|
|
if (t1->p == NULL) {
|
|
TestErrPrintf("Cannot allocate memory for VL data! i=%u, j=%u\n", i, j);
|
|
return;
|
|
} /* end if */
|
|
t1->len = j + 1;
|
|
for (k = 0; k < (j + 1); k++)
|
|
((unsigned int *)t1->p)[k] = i * 100 + j * 10 + k;
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Create file */
|
|
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fcreate");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
|
CHECK(sid1, FAIL, "H5Screate_simple");
|
|
|
|
/* Create a VL datatype to refer to */
|
|
tid1 = H5Tvlen_create(H5T_NATIVE_UINT);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create the base VL type */
|
|
tid2 = H5Tvlen_create(tid1);
|
|
CHECK(tid2, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create a dataset */
|
|
dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dcreate2");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Open file */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Create dataspace for datasets */
|
|
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
|
CHECK(sid1, FAIL, "H5Screate_simple");
|
|
|
|
/* Create a VL datatype to refer to */
|
|
tid1 = H5Tvlen_create(H5T_NATIVE_UINT);
|
|
CHECK(tid1, FAIL, "H5Tvlen_create");
|
|
|
|
/* Create the base VL type */
|
|
tid2 = H5Tvlen_create(tid1);
|
|
CHECK(tid2, FAIL, "H5Tvlen_create");
|
|
|
|
/* Open a dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory was used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
/* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */
|
|
VERIFY(size,
|
|
(hsize_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) +
|
|
vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)),
|
|
"H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
/* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */
|
|
VERIFY(mem_used,
|
|
(size_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) +
|
|
vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)),
|
|
"H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].len != rdata[i].len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
|
|
(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
|
|
continue;
|
|
} /* end if */
|
|
for (t1 = (hvl_t *)wdata[i].p, t2 = (hvl_t *)(rdata[i].p), j = 0; j < rdata[i].len; j++, t1++, t2++) {
|
|
if (t1->len != t2->len) {
|
|
TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n",
|
|
__LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len);
|
|
continue;
|
|
} /* end if */
|
|
for (k = 0; k < t2->len; k++) {
|
|
if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) {
|
|
TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k,
|
|
(int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim all the (nested) VL data */
|
|
ret = H5Treclaim(tid2, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid1);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end test_vltypes_vlen_vlen_atomic() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** rewrite_longer_vltypes_vlen_vlen_atomic(): Test basic VL datatype code.
|
|
** Tests VL datatype with VL datatypes of atomic datatypes.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
rewrite_longer_vltypes_vlen_vlen_atomic(void)
|
|
{
|
|
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
|
|
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
|
|
hvl_t *t1, *t2; /* Temporary pointer to VL information */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid2; /* Datatype IDs */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j, k; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
unsigned increment = 1;
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Check memory leak for VL Datatypes with VL Atomic Datatype Component Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].p = malloc((i + increment) * sizeof(hvl_t));
|
|
if (wdata[i].p == NULL) {
|
|
TestErrPrintf("Cannot allocate memory for VL data! i=%u\n", i);
|
|
return;
|
|
} /* end if */
|
|
wdata[i].len = i + increment;
|
|
for (t1 = (hvl_t *)(wdata[i].p), j = 0; j < (i + increment); j++, t1++) {
|
|
t1->p = malloc((j + 1) * sizeof(unsigned int));
|
|
if (t1->p == NULL) {
|
|
TestErrPrintf("Cannot allocate memory for VL data! i=%u, j=%u\n", i, j);
|
|
return;
|
|
} /* end if */
|
|
t1->len = j + 1;
|
|
for (k = 0; k < (j + 1); k++)
|
|
((unsigned int *)t1->p)[k] = i * 1000 + j * 100 + k * 10;
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Open file */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open the dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Get dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Open datatype of the dataset */
|
|
tid2 = H5Dget_type(dataset);
|
|
CHECK(tid2, FAIL, "H5Dget_type");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Open the file for data checking */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open a dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Get dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Get datatype for dataset */
|
|
tid2 = H5Dget_type(dataset);
|
|
CHECK(tid2, FAIL, "H5Dget_type");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory was used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 18 hvl_t elements allocated = 3 + 4 + 5 + 6 elements for each array position */
|
|
/* 52 unsigned int elements allocated = 6 + 10 + 15 + 21 elements */
|
|
/*VERIFY(size, 18 * sizeof(hvl_t) + 52 * sizeof(unsigned int), "H5Dvlen_get_buf_size");*/
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 18 hvl_t elements allocated = 3+4+5+6elements for each array position */
|
|
/* 52 unsigned int elements allocated = 6+10+15+21 elements */
|
|
/*VERIFY(mem_used,18*sizeof(hvl_t)+52*sizeof(unsigned int),"H5Dread");*/
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].len != rdata[i].len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
|
|
(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
|
|
continue;
|
|
} /* end if */
|
|
for (t1 = (hvl_t *)(wdata[i].p), t2 = (hvl_t *)(rdata[i].p), j = 0; j < rdata[i].len;
|
|
j++, t1++, t2++) {
|
|
if (t1->len != t2->len) {
|
|
TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n",
|
|
__LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len);
|
|
continue;
|
|
} /* end if */
|
|
for (k = 0; k < t2->len; k++) {
|
|
if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) {
|
|
TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k,
|
|
(int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim all the (nested) VL data */
|
|
ret = H5Treclaim(tid2, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end rewrite_longer_vltypes_vlen_vlen_atomic() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** rewrite_shorter_vltypes_vlen_vlen_atomic(): Test basic VL datatype code.
|
|
** Tests VL datatype with VL datatypes of atomic datatypes.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
rewrite_shorter_vltypes_vlen_vlen_atomic(void)
|
|
{
|
|
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
|
|
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
|
|
hvl_t *t1, *t2; /* Temporary pointer to VL information */
|
|
hid_t fid1; /* HDF5 File IDs */
|
|
hid_t dataset; /* Dataset ID */
|
|
hid_t sid1; /* Dataspace ID */
|
|
hid_t tid2; /* Datatype IDs */
|
|
hid_t xfer_pid; /* Dataset transfer property list ID */
|
|
hsize_t size; /* Number of bytes which will be used */
|
|
unsigned i, j, k; /* counting variables */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
unsigned increment = 1;
|
|
herr_t ret; /* Generic return value */
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Check memory leak for VL Datatypes with VL Atomic Datatype Component Functionality\n"));
|
|
|
|
/* Allocate and initialize VL data to write */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
wdata[i].p = malloc((i + increment) * sizeof(hvl_t));
|
|
if (wdata[i].p == NULL) {
|
|
TestErrPrintf("Cannot allocate memory for VL data! i=%u\n", i);
|
|
return;
|
|
} /* end if */
|
|
wdata[i].len = i + increment;
|
|
for (t1 = (hvl_t *)(wdata[i].p), j = 0; j < (i + increment); j++, t1++) {
|
|
t1->p = malloc((j + 1) * sizeof(unsigned int));
|
|
if (t1->p == NULL) {
|
|
TestErrPrintf("Cannot allocate memory for VL data! i=%u, j=%u\n", i, j);
|
|
return;
|
|
} /* end if */
|
|
t1->len = j + 1;
|
|
for (k = 0; k < (j + 1); k++)
|
|
((unsigned int *)t1->p)[k] = i * 100000 + j * 1000 + k * 10;
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Open file */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open the dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Get dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Open datatype of the dataset */
|
|
tid2 = H5Dget_type(dataset);
|
|
CHECK(tid2, FAIL, "H5Dget_type");
|
|
|
|
/* Write dataset to disk */
|
|
ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Open the file for data checking */
|
|
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
|
|
CHECK(fid1, FAIL, "H5Fopen");
|
|
|
|
/* Open a dataset */
|
|
dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT);
|
|
CHECK(dataset, FAIL, "H5Dopen2");
|
|
|
|
/* Get dataspace for datasets */
|
|
sid1 = H5Dget_space(dataset);
|
|
CHECK(sid1, FAIL, "H5Dget_space");
|
|
|
|
/* Get datatype for dataset */
|
|
tid2 = H5Dget_type(dataset);
|
|
CHECK(tid2, FAIL, "H5Dget_type");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Make certain the correct amount of memory was used */
|
|
ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size);
|
|
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
|
|
|
|
/* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
/* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */
|
|
VERIFY(size,
|
|
(hsize_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) +
|
|
vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)),
|
|
"H5Dvlen_get_buf_size");
|
|
|
|
/* Read dataset from disk */
|
|
ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Make certain the correct amount of memory has been used */
|
|
/* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */
|
|
/* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */
|
|
VERIFY(mem_used,
|
|
(size_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) +
|
|
vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)),
|
|
"H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < SPACE1_DIM1; i++) {
|
|
if (wdata[i].len != rdata[i].len) {
|
|
TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__,
|
|
(int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len);
|
|
continue;
|
|
} /* end if */
|
|
for (t1 = (hvl_t *)(wdata[i].p), t2 = (hvl_t *)(rdata[i].p), j = 0; j < rdata[i].len;
|
|
j++, t1++, t2++) {
|
|
if (t1->len != t2->len) {
|
|
TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n",
|
|
__LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len);
|
|
continue;
|
|
} /* end if */
|
|
for (k = 0; k < t2->len; k++) {
|
|
if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) {
|
|
TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k,
|
|
(int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
/* Reclaim all the (nested) VL data */
|
|
ret = H5Treclaim(tid2, sid1, xfer_pid, rdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Make certain the VL memory has been freed */
|
|
VERIFY(mem_used, 0, "H5Treclaim");
|
|
|
|
/* Reclaim the write VL data */
|
|
ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Close Dataset */
|
|
ret = H5Dclose(dataset);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close datatype */
|
|
ret = H5Tclose(tid2);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Close disk dataspace */
|
|
ret = H5Sclose(sid1);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
/* Close dataset transfer property list */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Close file */
|
|
ret = H5Fclose(fid1);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
} /* end rewrite_shorter_vltypes_vlen_vlen_atomic() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** test_vltypes_fill_value(): Test fill value for VL data.
|
|
** One tests data space isn't allocated; another tests data
|
|
** space is allocated.
|
|
**
|
|
****************************************************************/
|
|
static void
|
|
test_vltypes_fill_value(void)
|
|
{
|
|
typedef struct dtype1_struct {
|
|
unsigned int gui;
|
|
unsigned int pgui;
|
|
const char *str_id;
|
|
const char *str_name;
|
|
const char *str_desc;
|
|
const char *str_orig;
|
|
const char *str_stat;
|
|
unsigned int ver;
|
|
double val;
|
|
double ma;
|
|
double mi;
|
|
const char *str_form;
|
|
const char *str_unit;
|
|
} dtype1_struct;
|
|
|
|
herr_t ret;
|
|
hid_t file_id;
|
|
hid_t dtype1_id = H5I_INVALID_HID;
|
|
hid_t str_id = H5I_INVALID_HID;
|
|
hid_t small_dspace_id; /* Dataspace ID for small datasets */
|
|
hid_t large_dspace_id; /* Dataspace ID for large datasets */
|
|
hid_t small_select_dspace_id; /* Dataspace ID for selection in small datasets */
|
|
hid_t large_select_dspace_id; /* Dataspace ID for selection in large datasets */
|
|
hid_t dset_dspace_id = H5I_INVALID_HID; /* Dataspace ID for a particular dataset */
|
|
hid_t dset_select_dspace_id = H5I_INVALID_HID; /* Dataspace ID for selection in a particular dataset */
|
|
hid_t scalar_dspace_id; /* Dataspace ID for scalar dataspace */
|
|
hid_t single_dspace_id; /* Dataspace ID for single element selection */
|
|
hsize_t single_offset[] = {2}; /* Offset of single element selection */
|
|
hsize_t single_block[] = {1}; /* Block size of single element selection */
|
|
hsize_t select_offset[] = {0}; /* Offset of non-contiguous element selection */
|
|
hsize_t select_stride[] = {2}; /* Stride size of non-contiguous element selection */
|
|
hsize_t small_select_count[] = {SPACE4_DIM_SMALL /
|
|
2}; /* Count of small non-contiguous element selection */
|
|
hsize_t large_select_count[] = {SPACE4_DIM_LARGE /
|
|
2}; /* Count of large non-contiguous element selection */
|
|
hsize_t select_block[] = {1}; /* Block size of non-contiguous element selection */
|
|
hid_t dcpl_id, xfer_pid;
|
|
hid_t dset_id;
|
|
hsize_t small_dims[] = {SPACE4_DIM_SMALL};
|
|
hsize_t large_dims[] = {SPACE4_DIM_LARGE};
|
|
size_t dset_elmts = 0; /* Number of elements in a particular dataset */
|
|
const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead",
|
|
3, 4.0, 100.0, 1.0, "liquid", "meter"};
|
|
const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0, 200.0, 2.0, "solid", "yard"};
|
|
dtype1_struct *rbuf = NULL; /* Buffer for reading data */
|
|
size_t mem_used = 0; /* Memory used during allocation */
|
|
H5D_layout_t layout; /* Dataset storage layout */
|
|
char dset_name1[64], dset_name2[64]; /* Dataset names */
|
|
unsigned i;
|
|
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Check fill value for VL data\n"));
|
|
|
|
/* Create a string datatype */
|
|
str_id = H5Tcopy(H5T_C_S1);
|
|
CHECK(str_id, FAIL, "H5Tcopy");
|
|
ret = H5Tset_size(str_id, H5T_VARIABLE);
|
|
CHECK(ret, FAIL, "H5Tset_size");
|
|
|
|
/* Create a compound data type */
|
|
dtype1_id = H5Tcreate(H5T_COMPOUND, sizeof(struct dtype1_struct));
|
|
CHECK(dtype1_id, FAIL, "H5Tcreate");
|
|
|
|
ret = H5Tinsert(dtype1_id, "guid", HOFFSET(struct dtype1_struct, gui), H5T_NATIVE_UINT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "pguid", HOFFSET(struct dtype1_struct, pgui), H5T_NATIVE_UINT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "str_id", HOFFSET(dtype1_struct, str_id), str_id);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "str_name", HOFFSET(dtype1_struct, str_name), str_id);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "str_desc", HOFFSET(dtype1_struct, str_desc), str_id);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "str_orig", HOFFSET(dtype1_struct, str_orig), str_id);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "str_stat", HOFFSET(dtype1_struct, str_stat), str_id);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "ver", HOFFSET(struct dtype1_struct, ver), H5T_NATIVE_UINT);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "val", HOFFSET(struct dtype1_struct, val), H5T_NATIVE_DOUBLE);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "ma", HOFFSET(struct dtype1_struct, ma), H5T_NATIVE_DOUBLE);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "mi", HOFFSET(struct dtype1_struct, mi), H5T_NATIVE_DOUBLE);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "str_form", HOFFSET(dtype1_struct, str_form), str_id);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
ret = H5Tinsert(dtype1_id, "str_unit", HOFFSET(dtype1_struct, str_unit), str_id);
|
|
CHECK(ret, FAIL, "H5Tinsert");
|
|
|
|
/* Close string datatype */
|
|
ret = H5Tclose(str_id);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Allocate space for the buffer to read data */
|
|
rbuf = (dtype1_struct *)malloc(SPACE4_DIM_LARGE * sizeof(dtype1_struct));
|
|
CHECK_PTR(rbuf, "malloc");
|
|
|
|
/* Create the small & large dataspaces to use */
|
|
small_dspace_id = H5Screate_simple(SPACE4_RANK, small_dims, NULL);
|
|
CHECK(small_dspace_id, FAIL, "H5Screate_simple");
|
|
|
|
large_dspace_id = H5Screate_simple(SPACE4_RANK, large_dims, NULL);
|
|
CHECK(large_dspace_id, FAIL, "H5Screate_simple");
|
|
|
|
/* Create small & large dataspaces w/non-contiguous selections */
|
|
small_select_dspace_id = H5Scopy(small_dspace_id);
|
|
CHECK(small_select_dspace_id, FAIL, "H5Scopy");
|
|
|
|
ret = H5Sselect_hyperslab(small_select_dspace_id, H5S_SELECT_SET, select_offset, select_stride,
|
|
small_select_count, select_block);
|
|
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
|
|
|
large_select_dspace_id = H5Scopy(large_dspace_id);
|
|
CHECK(large_select_dspace_id, FAIL, "H5Scopy");
|
|
|
|
ret = H5Sselect_hyperslab(large_select_dspace_id, H5S_SELECT_SET, select_offset, select_stride,
|
|
large_select_count, select_block);
|
|
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
|
|
|
/* Create a scalar dataspace */
|
|
scalar_dspace_id = H5Screate(H5S_SCALAR);
|
|
CHECK(scalar_dspace_id, FAIL, "H5Screate");
|
|
|
|
/* Create dataset create property list and set the fill value */
|
|
dcpl_id = H5Pcreate(H5P_DATASET_CREATE);
|
|
CHECK(dcpl_id, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_fill_value(dcpl_id, dtype1_id, &fill1);
|
|
CHECK(ret, FAIL, "H5Pset_fill_value");
|
|
|
|
/* Create the file */
|
|
file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
|
CHECK(file_id, FAIL, "H5Fcreate");
|
|
|
|
/* Create datasets with different storage layouts */
|
|
for (layout = H5D_COMPACT; layout <= H5D_CHUNKED; layout++) {
|
|
unsigned compress_loop; /* # of times to run loop, for testing compressed chunked dataset */
|
|
unsigned test_loop; /* Loop over datasets */
|
|
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
if (layout == H5D_CHUNKED)
|
|
compress_loop = 2;
|
|
else
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
compress_loop = 1;
|
|
|
|
/* Loop over dataset operations */
|
|
for (test_loop = 0; test_loop < compress_loop; test_loop++) {
|
|
hid_t tmp_dcpl_id; /* Temporary copy of the dataset creation property list */
|
|
|
|
/* Make a copy of the dataset creation property list */
|
|
tmp_dcpl_id = H5Pcopy(dcpl_id);
|
|
CHECK(tmp_dcpl_id, FAIL, "H5Pcopy");
|
|
|
|
/* Layout specific actions */
|
|
switch (layout) {
|
|
case H5D_COMPACT:
|
|
strcpy(dset_name1, "dataset1-compact");
|
|
strcpy(dset_name2, "dataset2-compact");
|
|
dset_dspace_id = small_dspace_id;
|
|
ret = H5Pset_layout(tmp_dcpl_id, H5D_COMPACT);
|
|
CHECK(ret, FAIL, "H5Pset_layout");
|
|
break;
|
|
|
|
case H5D_CONTIGUOUS:
|
|
strcpy(dset_name1, "dataset1-contig");
|
|
strcpy(dset_name2, "dataset2-contig");
|
|
dset_dspace_id = large_dspace_id;
|
|
break;
|
|
|
|
case H5D_CHUNKED: {
|
|
hsize_t chunk_dims[1] = {SPACE4_DIM_LARGE / 4};
|
|
|
|
dset_dspace_id = large_dspace_id;
|
|
ret = H5Pset_chunk(tmp_dcpl_id, 1, chunk_dims);
|
|
CHECK(ret, FAIL, "H5Pset_chunk");
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
if (test_loop == 1) {
|
|
strcpy(dset_name1, "dataset1-chunked-compressed");
|
|
strcpy(dset_name2, "dataset2-chunked-compressed");
|
|
ret = H5Pset_deflate(tmp_dcpl_id, 3);
|
|
CHECK(ret, FAIL, "H5Pset_deflate");
|
|
} /* end if */
|
|
else {
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
strcpy(dset_name1, "dataset1-chunked");
|
|
strcpy(dset_name2, "dataset2-chunked");
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
} /* end else */
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
} break;
|
|
|
|
case H5D_VIRTUAL:
|
|
assert(0 && "Invalid layout type!");
|
|
break;
|
|
|
|
case H5D_LAYOUT_ERROR:
|
|
case H5D_NLAYOUTS:
|
|
default:
|
|
assert(0 && "Unknown layout type!");
|
|
break;
|
|
} /* end switch */
|
|
|
|
/* Create first data set with default setting - no space is allocated */
|
|
dset_id = H5Dcreate2(file_id, dset_name1, dtype1_id, dset_dspace_id, H5P_DEFAULT, tmp_dcpl_id,
|
|
H5P_DEFAULT);
|
|
CHECK(dset_id, FAIL, "H5Dcreate2");
|
|
|
|
ret = H5Dclose(dset_id);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Create a second data set with space allocated and fill value written */
|
|
ret = H5Pset_fill_time(tmp_dcpl_id, H5D_FILL_TIME_IFSET);
|
|
CHECK(ret, FAIL, "H5Pset_fill_time");
|
|
|
|
ret = H5Pset_alloc_time(tmp_dcpl_id, H5D_ALLOC_TIME_EARLY);
|
|
CHECK(ret, FAIL, "H5Pset_alloc_time");
|
|
|
|
dset_id = H5Dcreate2(file_id, dset_name2, dtype1_id, dset_dspace_id, H5P_DEFAULT, tmp_dcpl_id,
|
|
H5P_DEFAULT);
|
|
CHECK(dset_id, FAIL, "H5Dcreate2");
|
|
|
|
ret = H5Dclose(dset_id);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close temporary DCPL */
|
|
ret = H5Pclose(tmp_dcpl_id);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
ret = H5Fclose(file_id);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
ret = H5Pclose(dcpl_id);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
/* Change to the custom memory allocation routines for reading VL data */
|
|
xfer_pid = H5Pcreate(H5P_DATASET_XFER);
|
|
CHECK(xfer_pid, FAIL, "H5Pcreate");
|
|
|
|
ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom,
|
|
&mem_used);
|
|
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
|
|
|
|
/* Open the file to check data set value */
|
|
file_id = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
|
|
CHECK(file_id, FAIL, "H5Fopen");
|
|
|
|
/* Read empty datasets with different storage layouts */
|
|
for (layout = H5D_COMPACT; layout <= H5D_CHUNKED; layout++) {
|
|
unsigned compress_loop; /* # of times to run loop, for testing compressed chunked dataset */
|
|
unsigned test_loop; /* Loop over datasets */
|
|
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
if (layout == H5D_CHUNKED)
|
|
compress_loop = 2;
|
|
else
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
compress_loop = 1;
|
|
|
|
/* Loop over dataset operations */
|
|
for (test_loop = 0; test_loop < compress_loop; test_loop++) {
|
|
|
|
/* Layout specific actions */
|
|
switch (layout) {
|
|
case H5D_COMPACT:
|
|
strcpy(dset_name1, "dataset1-compact");
|
|
strcpy(dset_name2, "dataset2-compact");
|
|
dset_dspace_id = small_dspace_id;
|
|
dset_select_dspace_id = small_select_dspace_id;
|
|
dset_elmts = SPACE4_DIM_SMALL;
|
|
break;
|
|
|
|
case H5D_CONTIGUOUS:
|
|
strcpy(dset_name1, "dataset1-contig");
|
|
strcpy(dset_name2, "dataset2-contig");
|
|
dset_dspace_id = large_dspace_id;
|
|
dset_select_dspace_id = large_select_dspace_id;
|
|
dset_elmts = SPACE4_DIM_LARGE;
|
|
break;
|
|
|
|
case H5D_CHUNKED:
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
if (test_loop == 1) {
|
|
strcpy(dset_name1, "dataset1-chunked-compressed");
|
|
strcpy(dset_name2, "dataset2-chunked-compressed");
|
|
} /* end if */
|
|
else {
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
strcpy(dset_name1, "dataset1-chunked");
|
|
strcpy(dset_name2, "dataset2-chunked");
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
} /* end else */
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
dset_dspace_id = large_dspace_id;
|
|
dset_select_dspace_id = large_select_dspace_id;
|
|
dset_elmts = SPACE4_DIM_LARGE;
|
|
break;
|
|
|
|
case H5D_VIRTUAL:
|
|
assert(0 && "Invalid layout type!");
|
|
break;
|
|
|
|
case H5D_LAYOUT_ERROR:
|
|
case H5D_NLAYOUTS:
|
|
default:
|
|
assert(0 && "Unknown layout type!");
|
|
break;
|
|
} /* end switch */
|
|
|
|
/* Open first data set */
|
|
dset_id = H5Dopen2(file_id, dset_name1, H5P_DEFAULT);
|
|
CHECK(dset_id, FAIL, "H5Dopen2");
|
|
|
|
/* Read in the entire 'empty' dataset of fill value */
|
|
ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Clear the read buffer */
|
|
memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct));
|
|
|
|
/* Read in non-contiguous selection from 'empty' dataset of fill value */
|
|
ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if ((i % 2) == select_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig ||
|
|
rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end else */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
ret = H5Dclose(dset_id);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Open the second data set to check the value of data */
|
|
dset_id = H5Dopen2(file_id, dset_name2, H5P_DEFAULT);
|
|
CHECK(dset_id, FAIL, "H5Dopen2");
|
|
|
|
/* Read in the entire 'empty' dataset of fill value */
|
|
ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Clear the read buffer */
|
|
memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct));
|
|
|
|
/* Read in non-contiguous selection from 'empty' dataset of fill value */
|
|
ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if ((i % 2) == select_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig ||
|
|
rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end else */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_select_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
ret = H5Dclose(dset_id);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
ret = H5Fclose(file_id);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Open the file to check data set value */
|
|
file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
|
|
CHECK(file_id, FAIL, "H5Fopen");
|
|
|
|
/* Write one element & fill values to datasets with different storage layouts */
|
|
for (layout = H5D_COMPACT; layout <= H5D_CHUNKED; layout++) {
|
|
unsigned compress_loop; /* # of times to run loop, for testing compressed chunked dataset */
|
|
unsigned test_loop; /* Loop over datasets */
|
|
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
if (layout == H5D_CHUNKED)
|
|
compress_loop = 2;
|
|
else
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
compress_loop = 1;
|
|
|
|
/* Loop over dataset operations */
|
|
for (test_loop = 0; test_loop < compress_loop; test_loop++) {
|
|
|
|
/* Layout specific actions */
|
|
switch (layout) {
|
|
case H5D_COMPACT:
|
|
strcpy(dset_name1, "dataset1-compact");
|
|
strcpy(dset_name2, "dataset2-compact");
|
|
dset_dspace_id = small_dspace_id;
|
|
dset_select_dspace_id = small_select_dspace_id;
|
|
dset_elmts = SPACE4_DIM_SMALL;
|
|
break;
|
|
|
|
case H5D_CONTIGUOUS:
|
|
strcpy(dset_name1, "dataset1-contig");
|
|
strcpy(dset_name2, "dataset2-contig");
|
|
dset_dspace_id = large_dspace_id;
|
|
dset_select_dspace_id = large_select_dspace_id;
|
|
dset_elmts = SPACE4_DIM_LARGE;
|
|
break;
|
|
|
|
case H5D_CHUNKED:
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
if (test_loop == 1) {
|
|
strcpy(dset_name1, "dataset1-chunked-compressed");
|
|
strcpy(dset_name2, "dataset2-chunked-compressed");
|
|
} /* end if */
|
|
else {
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
strcpy(dset_name1, "dataset1-chunked");
|
|
strcpy(dset_name2, "dataset2-chunked");
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
} /* end else */
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
dset_dspace_id = large_dspace_id;
|
|
dset_select_dspace_id = large_select_dspace_id;
|
|
dset_elmts = SPACE4_DIM_LARGE;
|
|
break;
|
|
|
|
case H5D_VIRTUAL:
|
|
assert(0 && "Invalid layout type!");
|
|
break;
|
|
|
|
case H5D_LAYOUT_ERROR:
|
|
case H5D_NLAYOUTS:
|
|
default:
|
|
assert(0 && "Unknown layout type!");
|
|
break;
|
|
} /* end switch */
|
|
|
|
/* Copy the dataset's dataspace */
|
|
single_dspace_id = H5Scopy(dset_dspace_id);
|
|
CHECK(single_dspace_id, FAIL, "H5Scopy");
|
|
|
|
/* Set a single element in the dataspace */
|
|
ret = H5Sselect_hyperslab(single_dspace_id, H5S_SELECT_SET, single_offset, NULL, single_block,
|
|
NULL);
|
|
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
|
|
|
/* Open first data set */
|
|
dset_id = H5Dopen2(file_id, dset_name1, H5P_DEFAULT);
|
|
CHECK(dset_id, FAIL, "H5Dopen2");
|
|
|
|
/* Write one element in the dataset */
|
|
ret = H5Dwrite(dset_id, dtype1_id, scalar_dspace_id, single_dspace_id, xfer_pid, &wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if (i == single_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name ||
|
|
strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 ||
|
|
strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 ||
|
|
strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 ||
|
|
strcmp(rbuf[i].str_form, wdata.str_form) != 0 ||
|
|
strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Clear the read buffer */
|
|
memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct));
|
|
|
|
/* Read in non-contiguous selection from dataset */
|
|
ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if (i == single_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name ||
|
|
strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 ||
|
|
strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 ||
|
|
strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 ||
|
|
strcmp(rbuf[i].str_form, wdata.str_form) != 0 ||
|
|
strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if ((i % 2) == select_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 ||
|
|
strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig ||
|
|
rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end else */
|
|
} /* end else */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_select_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
ret = H5Dclose(dset_id);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Open the second data set to check the value of data */
|
|
dset_id = H5Dopen2(file_id, dset_name2, H5P_DEFAULT);
|
|
CHECK(dset_id, FAIL, "H5Dopen2");
|
|
|
|
/* Write one element in the dataset */
|
|
ret = H5Dwrite(dset_id, dtype1_id, scalar_dspace_id, single_dspace_id, xfer_pid, &wdata);
|
|
CHECK(ret, FAIL, "H5Dwrite");
|
|
|
|
ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if (i == single_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name ||
|
|
strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 ||
|
|
strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 ||
|
|
strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 ||
|
|
strcmp(rbuf[i].str_form, wdata.str_form) != 0 ||
|
|
strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
/* Clear the read buffer */
|
|
memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct));
|
|
|
|
/* Read in non-contiguous selection from dataset */
|
|
ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Dread");
|
|
|
|
/* Compare data read in */
|
|
for (i = 0; i < dset_elmts; i++) {
|
|
if (i == single_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name ||
|
|
strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 ||
|
|
strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 ||
|
|
strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 ||
|
|
strcmp(rbuf[i].str_form, wdata.str_form) != 0 ||
|
|
strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if ((i % 2) == select_offset[0]) {
|
|
if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 ||
|
|
rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 ||
|
|
strcmp(rbuf[i].str_stat, "dead") != 0 ||
|
|
strcmp(rbuf[i].str_form, "liquid") != 0 ||
|
|
strcmp(rbuf[i].str_unit, "meter") != 0) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end if */
|
|
else {
|
|
if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig ||
|
|
rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) {
|
|
TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i);
|
|
continue;
|
|
} /* end if */
|
|
} /* end else */
|
|
} /* end else */
|
|
} /* end for */
|
|
|
|
/* Release the space */
|
|
ret = H5Treclaim(dtype1_id, dset_select_dspace_id, xfer_pid, rbuf);
|
|
CHECK(ret, FAIL, "H5Treclaim");
|
|
|
|
ret = H5Dclose(dset_id);
|
|
CHECK(ret, FAIL, "H5Dclose");
|
|
|
|
/* Close the dataspace for the writes */
|
|
ret = H5Sclose(single_dspace_id);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
} /* end for */
|
|
} /* end for */
|
|
|
|
ret = H5Fclose(file_id);
|
|
CHECK(ret, FAIL, "H5Fclose");
|
|
|
|
/* Clean up rest of IDs */
|
|
ret = H5Pclose(xfer_pid);
|
|
CHECK(ret, FAIL, "H5Pclose");
|
|
|
|
ret = H5Sclose(small_dspace_id);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
ret = H5Sclose(large_dspace_id);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
ret = H5Sclose(small_select_dspace_id);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
ret = H5Sclose(large_select_dspace_id);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
ret = H5Sclose(scalar_dspace_id);
|
|
CHECK(ret, FAIL, "H5Sclose");
|
|
|
|
ret = H5Tclose(dtype1_id);
|
|
CHECK(ret, FAIL, "H5Tclose");
|
|
|
|
/* Release buffer */
|
|
free(rbuf);
|
|
} /* end test_vltypes_fill_value() */
|
|
|
|
/****************************************************************
|
|
**
|
|
** test_vltypes(): Main VL datatype testing routine.
|
|
**
|
|
****************************************************************/
|
|
void
|
|
test_vltypes(const void H5_ATTR_UNUSED *params)
|
|
{
|
|
/* Output message about test being performed */
|
|
MESSAGE(5, ("Testing Variable-Length Datatypes\n"));
|
|
|
|
/* These next tests use the same file */
|
|
test_vltypes_dataset_create(); /* Check dataset of VL when fill value
|
|
* won't be rewritten to it.*/
|
|
test_vltypes_funcs(); /* Test functions with VL types */
|
|
test_vltypes_vlen_atomic(); /* Test VL atomic datatypes */
|
|
rewrite_vltypes_vlen_atomic(); /* Check VL memory leak */
|
|
test_vltypes_vlen_compound(); /* Test VL compound datatypes */
|
|
rewrite_vltypes_vlen_compound(); /* Check VL memory leak */
|
|
test_vltypes_compound_vlen_atomic(); /* Test compound datatypes with VL atomic components */
|
|
rewrite_vltypes_compound_vlen_atomic(); /* Check VL memory leak */
|
|
test_vltypes_vlen_vlen_atomic(); /* Test VL datatype with VL atomic components */
|
|
rewrite_longer_vltypes_vlen_vlen_atomic(); /*overwrite with VL data of longer sequence*/
|
|
rewrite_shorter_vltypes_vlen_vlen_atomic(); /*overwrite with VL data of shorted sequence*/
|
|
test_vltypes_compound_vlen_vlen(); /* Test compound datatypes with VL atomic components */
|
|
test_vltypes_compound_vlstr(); /* Test data rewritten of nested VL data */
|
|
test_vltypes_fill_value(); /* Test fill value for VL data */
|
|
} /* test_vltypes() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: cleanup_vltypes
|
|
*
|
|
* Purpose: Cleanup temporary test files
|
|
*
|
|
* Return: none
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
cleanup_vltypes(void H5_ATTR_UNUSED *params)
|
|
{
|
|
if (GetTestCleanup()) {
|
|
H5E_BEGIN_TRY
|
|
{
|
|
H5Fdelete(FILENAME, H5P_DEFAULT);
|
|
}
|
|
H5E_END_TRY
|
|
}
|
|
}
|