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427ff7da28
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
534 lines
14 KiB
C
534 lines
14 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*
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* Programmer: Robb Matzke <matzke@llnl.gov>
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* Wednesday, April 8, 1998
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*/
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#include "h5test.h"
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const char *FILENAME[] = {
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"big",
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NULL
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};
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#define DNAME "big.data"
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#define WRT_N 50
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#define WRT_SIZE 4*1024
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#define FAMILY_SIZE 1024*1024*1024
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#if H5_SIZEOF_LONG_LONG >= 8
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# define GB8LL ((unsigned long_long)8*1024*1024*1024)
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#else
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# define GB8LL 0 /*cannot do the test*/
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#endif
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/* Protocols */
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static void usage(void);
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/*-------------------------------------------------------------------------
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* Function: randll
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*
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* Purpose: Create a random long_long value.
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*
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* Return: Success: Random value
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*
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* Failure: never fails
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*
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* Programmer: Robb Matzke
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* Tuesday, November 24, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static hsize_t
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randll(hsize_t limit)
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{
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hsize_t acc = rand ();
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acc *= rand ();
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return acc % limit;
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}
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/*-------------------------------------------------------------------------
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* Function: is_sparse
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*
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* Purpose: Determines if the file system of the current working
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* directory supports holes.
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*
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* Return: Success: Non-zero if holes are supported; zero
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* otherwise.
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*
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* Failure: zero
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*
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* Programmer: Robb Matzke
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* Wednesday, July 15, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static int
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is_sparse(void)
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{
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int fd;
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h5_stat_t sb;
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if ((fd=HDopen("x.h5", O_RDWR|O_TRUNC|O_CREAT, 0666))<0) return 0;
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if (HDlseek(fd, (off_t)(1024*1024), SEEK_SET)!=1024*1024) return 0;
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if (5!=HDwrite(fd, "hello", 5)) return 0;
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if (HDclose(fd)<0) return 0;
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if (HDstat("x.h5", &sb)<0) return 0;
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if (HDunlink("x.h5")<0) return 0;
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#ifdef H5_HAVE_STAT_ST_BLOCKS
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return ((unsigned long)sb.st_blocks*512 < (unsigned long)sb.st_size);
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#else
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return (0);
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#endif
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}
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/*-------------------------------------------------------------------------
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* Function: enough_room
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*
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* Purpose: Tries to create a bunch of sparse files to see if quotas will
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* get in the way. Some systems also have problems opening
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* enough files and we'll check that too.
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*
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* Return: Success: Non-zero
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*
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* Failure: zero
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*
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* Programmer: Robb Matzke
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* Thursday, August 6, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static int
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enough_room(hid_t fapl)
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{
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int ret_value=0;
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int fd[68];
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size_t i, size = (size_t)1 << 30;
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char filename[1024], name[1024];
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/* Initialize file descriptors */
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for (i=0; i<NELMTS(fd); i++) fd[i] = -1;
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/* Get file name template */
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assert(H5FD_FAMILY==H5Pget_driver(fapl));
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h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
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/* Create files */
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for (i=0; i<NELMTS(fd); i++) {
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HDsnprintf(name, sizeof name, filename, i);
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if ((fd[i]=HDopen(name, O_RDWR|O_CREAT|O_TRUNC, 0666))<0) {
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goto done;
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}
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if ((off_t)size != HDlseek(fd[i], (off_t)size, SEEK_SET)) {
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goto done;
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}
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if (1!=HDwrite(fd[i], "X", 1)) {
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goto done;
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}
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}
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ret_value = 1;
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done:
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for (i=0; i<NELMTS(fd) && fd[i]>=0; i++) {
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HDsnprintf(name, sizeof name, filename, i);
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if(HDclose(fd[i])<0)
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ret_value=0;
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HDunlink(name);
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}
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return ret_value;
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}
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/*-------------------------------------------------------------------------
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* Function: writer
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*
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* Purpose: Creates a *big* dataset.
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*
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* Return: Success: 0
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*
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* Failure: >0
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*
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* Programmer: Robb Matzke
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* Wednesday, April 8, 1998
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*
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* Modifications:
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* Robb Matzke, 15 Jul 1998
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* Addresses are written to the file DNAME instead of stdout.
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*
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*-------------------------------------------------------------------------
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*/
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static int
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writer (hid_t fapl, int wrt_n)
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{
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hsize_t size1[4] = {8, 1024, 1024, 1024};
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hsize_t size2[1] = {GB8LL};
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hsize_t hs_start[1];
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hsize_t hs_size[1];
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hid_t file=-1, space1=-1, space2=-1, mem_space=-1, d1=-1, d2=-1;
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int *buf = malloc (sizeof(int) * WRT_SIZE);
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int i, j;
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FILE *out = fopen(DNAME, "w");
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char filename[1024];
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hid_t dcpl;
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TESTING("large dataset write");
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/*
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* We might be on a machine that has 32-bit files, so create an HDF5 file
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* which is a family of files. Each member of the family will be 1GB
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*/
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h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
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if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl))<0) {
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goto error;
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}
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/* Create simple data spaces according to the size specified above. */
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if ((space1 = H5Screate_simple (4, size1, size1))<0 ||
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(space2 = H5Screate_simple (1, size2, size2))<0) {
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goto error;
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}
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/* Create the datasets */
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/*
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* The fix below is provided for bug#921
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* H5Dcreate with H5P_DEFAULT creation properties
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* will create a set of solid 1GB files; test will crash if quotas are enforced
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* or it will take some time to write a file.
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* We should create a dataset allocating space late and never writing fill values.
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* EIP 4/8/03
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if ((d1=H5Dcreate (file, "d1", H5T_NATIVE_INT, space1, H5P_DEFAULT))<0 ||
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(d2=H5Dcreate (file, "d2", H5T_NATIVE_INT, space2, H5P_DEFAULT))<0) {
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goto error;
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}
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*/
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dcpl = H5Pcreate(H5P_DATASET_CREATE);
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H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_LATE);
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H5Pset_fill_time(dcpl, H5D_FILL_TIME_NEVER);
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if ((d1=H5Dcreate (file, "d1", H5T_NATIVE_INT, space1, dcpl))<0 ||
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(d2=H5Dcreate (file, "d2", H5T_NATIVE_INT, space2, dcpl))<0) {
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goto error;
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}
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/* Write some things to them randomly */
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hs_size[0] = WRT_SIZE;
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if ((mem_space = H5Screate_simple (1, hs_size, hs_size))<0) goto error;
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for (i=0; i<wrt_n; i++) {
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hs_start[0] = randll (size2[0]);
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HDfprintf (out, "#%03d 0x%016Hx\n", i, hs_start[0]);
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if (H5Sselect_hyperslab (space2, H5S_SELECT_SET, hs_start, NULL,
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hs_size, NULL)<0) goto error;
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for (j=0; j<WRT_SIZE; j++) {
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buf[j] = i+1;
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}
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if (H5Dwrite (d2, H5T_NATIVE_INT, mem_space, space2,
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H5P_DEFAULT, buf)<0) goto error;
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}
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if (H5Dclose (d1)<0) goto error;
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if (H5Dclose (d2)<0) goto error;
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if (H5Sclose (mem_space)<0) goto error;
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if (H5Sclose (space1)<0) goto error;
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if (H5Sclose (space2)<0) goto error;
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if (H5Fclose (file)<0) goto error;
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free (buf);
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fclose(out);
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PASSED();
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return 0;
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error:
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H5E_BEGIN_TRY {
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H5Dclose(d1);
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H5Dclose(d2);
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H5Sclose(space1);
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H5Sclose(space2);
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H5Sclose(mem_space);
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H5Fclose(file);
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} H5E_END_TRY;
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if (buf) free(buf);
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if (out) fclose(out);
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return 1;
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}
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/*-------------------------------------------------------------------------
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* Function: reader
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*
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* Purpose: Reads some data from random locations in the dataset.
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*
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* Return: Success: 0
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*
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* Failure: >0
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*
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* Programmer: Robb Matzke
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* Friday, April 10, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static int
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reader (hid_t fapl)
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{
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FILE *script = NULL;
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hid_t file=-1, mspace=-1, fspace=-1, d2=-1;
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char ln[128], *s;
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hsize_t hs_offset[1];
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hsize_t hs_size[1] = {WRT_SIZE};
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int *buf = malloc (sizeof(int) * WRT_SIZE);
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int i, j, zero, wrong, nerrors=0;
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char filename[1024];
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/* Open script file */
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script = fopen (DNAME, "r");
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/* Open HDF5 file */
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h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
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if ((file=H5Fopen(filename, H5F_ACC_RDONLY, fapl))<0) goto error;
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/* Open the dataset */
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if ((d2 = H5Dopen (file, "d2"))<0) goto error;
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if ((fspace = H5Dget_space (d2))<0) goto error;
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/* Describe `buf' */
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if ((mspace = H5Screate_simple (1, hs_size, hs_size))<0) goto error;
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/* Read each region */
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while (fgets (ln, sizeof(ln), script)) {
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if ('#'!=ln[0]) break;
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i = (int)strtol (ln+1, &s, 10);
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hs_offset[0] = HDstrtoll (s, NULL, 0);
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HDfprintf (stdout, "#%03d 0x%016Hx%47s", i, hs_offset[0], "");
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fflush (stdout);
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if (H5Sselect_hyperslab (fspace, H5S_SELECT_SET, hs_offset, NULL,
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hs_size, NULL)<0) goto error;
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if (H5Dread (d2, H5T_NATIVE_INT, mspace, fspace, H5P_DEFAULT, buf)<0) {
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goto error;
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}
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/* Check */
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for (j=zero=wrong=0; j<WRT_SIZE; j++) {
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if (0==buf[j]) zero++;
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else if (buf[j]!=i+1) wrong++;
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}
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if (zero) {
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H5_FAILED();
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printf(" %d zero%s\n", zero, 1==zero?"":"s");
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} else if (wrong) {
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SKIPPED();
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puts(" Possible overlap with another region.");
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nerrors++;
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} else {
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PASSED();
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}
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}
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if (H5Dclose (d2)<0) goto error;
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if (H5Sclose (mspace)<0) goto error;
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if (H5Sclose (fspace)<0) goto error;
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if (H5Fclose (file)<0) goto error;
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free (buf);
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fclose (script);
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return nerrors;
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error:
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H5E_BEGIN_TRY {
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H5Dclose(d2);
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H5Sclose(mspace);
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H5Sclose(fspace);
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H5Fclose(file);
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} H5E_END_TRY;
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if (buf) free(buf);
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if (script) fclose(script);
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return 1;
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}
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/*-------------------------------------------------------------------------
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* Function: usage
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*
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* Purpose: Print command usage
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*
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* Return: void
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*
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* Programmer: Albert Chent
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* Mar 28, 2002
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static void
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usage(void)
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{
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HDfprintf(stdout,
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"Usage: big [-h] [-c] [-fsize <fsize>}\n"
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"\t-h\tPrint the help page\n"
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"\t-c\tFile system Checking skipped. Caution: this test generates\n"
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"\t\tmany big files and may fill up the file system.\n"
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"\t-fsize\tChange family size default to <fsize> where <fsize> is\n"
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"\t\ta positive float point number. Default value is %Hu.\n"
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"Examples:\n"
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"\tbig -fsize 2.1e9 \t# test with file size just under 2GB\n"
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"\tbig -fsize 2.2e9 \t# test with file size just above 2GB\n"
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"\tBe sure the file system can support the file size requested\n"
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, (hsize_t)FAMILY_SIZE);
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}
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/*-------------------------------------------------------------------------
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* Function: main
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*
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* Purpose:
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*
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* Return: Success:
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*
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* Failure:
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*
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* Programmer: Robb Matzke
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* Friday, April 10, 1998
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*
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* Modifications:
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* Albert Cheng, 2002/03/28
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* Added command option -fsize.
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* Albert Cheng, 2002/04/19
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* Added command option -c.
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*
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*-------------------------------------------------------------------------
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*/
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int
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main (int ac, char **av)
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{
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hid_t fapl=-1;
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hsize_t family_size;
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hsize_t family_size_def; /* default family file size */
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double family_size_def_dbl; /* default family file size */
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int cflag=1; /* check file system before test */
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/* parameters setup */
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family_size_def = FAMILY_SIZE;
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while (--ac > 0){
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av++;
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if (strcmp("-fsize", *av)==0){
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/* specify a different family file size */
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ac--; av++;
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if (ac > 0){
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family_size_def_dbl = atof(*av);
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H5_ASSIGN_OVERFLOW(family_size_def,family_size_def_dbl,double,hsize_t);
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if (family_size_def <= 0)
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family_size_def = (hsize_t)FAMILY_SIZE;
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}
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else{
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printf("***Missing fsize value***\n");
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usage();
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return 1;
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}
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}
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else if (strcmp("-c", *av)==0){
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/* turn off file system check before test */
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cflag=0;
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}
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else if (strcmp("-h", *av)==0){
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usage();
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return 0;
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}else{
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usage();
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return 1;
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}
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}
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/* Reset library */
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h5_reset();
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fapl = h5_fileaccess();
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/* The file driver must be the family driver */
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if (H5FD_FAMILY!=H5Pget_driver(fapl)) {
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HDfprintf(stdout,
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"Changing file drivers to the family driver, %Hu bytes each\n",
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family_size_def);
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if (H5Pset_fapl_family(fapl, family_size_def, H5P_DEFAULT)<0) goto error;
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} else if (H5Pget_fapl_family(fapl, &family_size, NULL)<0) {
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goto error;
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} else if (family_size!=family_size_def) {
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HDfprintf(stdout, "Changing family member size from %Hu to %Hu\n",
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family_size, family_size_def);
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if (H5Pset_fapl_family(fapl, family_size_def, H5P_DEFAULT)<0)
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goto error;
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}
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if (cflag){
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/*
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* We shouldn't run this test if the file system doesn't support holes
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* because we would generate multi-gigabyte files.
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*/
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puts("Checking if file system is adequate for this test...");
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if (sizeof(long_long)<8 || 0==GB8LL) {
|
||
puts("Test skipped because sizeof(long_long) is too small. This");
|
||
puts("hardware apparently doesn't support 64-bit integer types.");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
if (!is_sparse()) {
|
||
puts("Test skipped because file system does not support holes.");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
if (!enough_room(fapl)) {
|
||
puts("Test skipped because of quota (file size or num open files).");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
if (sizeof(hsize_t)<=4) {
|
||
puts("Test skipped because the hdf5 library was configured with the");
|
||
puts("--disable-hsizet flag in order to work around a compiler bug.");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
}
|
||
|
||
/* Do the test */
|
||
if (writer(fapl, WRT_N)) goto error;
|
||
if (reader(fapl)) goto error;
|
||
puts("All big tests passed.");
|
||
|
||
quit:
|
||
/* End with normal exit code */
|
||
if (h5_cleanup(FILENAME, fapl)) remove(DNAME);
|
||
return 0;
|
||
|
||
error:
|
||
if (fapl>=0) H5Pclose(fapl);
|
||
puts("*** TEST FAILED ***");
|
||
return 1;
|
||
}
|