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hdf5/java/test/TestH5P.java

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5P {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testP.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long[] H5dims = { DIM_X, DIM_Y };
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long lapl_id = -1;
long fapl_id = -1;
long fcpl_id = -1;
long ocpl_id = -1;
long ocp_plist_id = -1;
long lcpl_id = -1;
long plapl_id = -1;
long plist_id = -1;
long gapl_id = -1;
long gcpl_id = -1;
long acpl_id = -1;
private final void _deleteFile(String filename) {
File file = new File(filename);
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
}
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
assertTrue("TestH5P._createDataset: ", did > 0);
return did;
}
private final void _createH5File(long fcpl, long fapl) {
try {
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
fcpl, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5P.createH5file: " + err);
}
assertTrue("TestH5P.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5P.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
assertTrue("TestH5P.createH5file: _createDataset: ", H5did > 0);
try {
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Throwable err) {
err.printStackTrace();
}
}
public void deleteH5file() throws HDF5LibraryException {
_deleteFile(H5_FILE);
}
@Before
public void createH5fileProperties()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
try {
lapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
fcpl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE);
ocpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
lcpl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_CREATE);
plapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS);
plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
gapl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_ACCESS);
gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE);
acpl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_CREATE);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5P.createH5file: " + err);
}
assertTrue(lapl_id > 0);
assertTrue(fapl_id > 0);
assertTrue(fcpl_id > 0);
assertTrue(ocpl_id > 0);
assertTrue(ocp_plist_id > 0);
assertTrue(lcpl_id > 0);
assertTrue(plapl_id>0);
assertTrue(plist_id > 0);
assertTrue(gapl_id > 0);
assertTrue(gcpl_id >0);
assertTrue(acpl_id >0);
}
@After
public void deleteH5fileProperties() throws HDF5LibraryException {
if (lapl_id >0)
try {H5.H5Pclose(lapl_id);} catch (Exception ex) {}
if (fapl_id >0)
try {H5.H5Pclose(fapl_id);} catch (Exception ex) {}
if (fcpl_id >0)
try {H5.H5Pclose(fcpl_id);} catch (Exception ex) {}
if (ocpl_id >0)
try {H5.H5Pclose(ocpl_id);} catch (Exception ex) {}
if (ocp_plist_id >0)
try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
if (lcpl_id >0)
try {H5.H5Pclose(lcpl_id);} catch (Exception ex) {}
if (plapl_id >0)
try {H5.H5Pclose(plapl_id);} catch (Exception ex) {}
if (plist_id >0)
try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
if (gapl_id >0)
try {H5.H5Pclose(gapl_id);} catch (Exception ex) {}
if (gcpl_id >0)
try {H5.H5Pclose(gcpl_id);} catch (Exception ex) {}
if (acpl_id >0)
try {H5.H5Pclose(acpl_id);} catch (Exception ex) {}
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
System.out.println();
}
@Test
public void testH5Pget_nlinks() {
long nlinks = -1;
try {
nlinks = (long) H5.H5Pget_nlinks(lapl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Pget_nlinks: " + err);
}
assertTrue("testH5Pget_nlinks", nlinks > 0);
// Check the default value of nlinks.
assertEquals(nlinks, 16L);
}
@Test
public void testH5Pset_nlinks() {
long nlinks = 20;
int ret_val = -1;
try {
ret_val = H5.H5Pset_nlinks(lapl_id, nlinks);
nlinks = (long) H5.H5Pget_nlinks(lapl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Pset_nlinks: " + err);
}
assertTrue("testH5Pset_nlinks", ret_val >= 0);
// Check the value of nlinks retrieved from H5Pget_nlinks function.
assertEquals(nlinks, 20L);
}
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Pset_libver_bounds_invalidlow() throws Throwable {
H5.H5Pset_libver_bounds(fapl_id, 5, HDF5Constants.H5F_LIBVER_LATEST);
}
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Pset_libver_bounds_invalidhigh() throws Throwable {
H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_V110, HDF5Constants.H5F_LIBVER_V110+1);
}
@Test
public void testH5Pget_link_creation_order() {
int crt_order_flags = 0;
try {
crt_order_flags = H5.H5Pget_link_creation_order(fcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_link_creation_order: " + err);
}
assertTrue("testH5Pget_link_creation_order", crt_order_flags >= 0);
}
@Test
public void testH5Pset_link_creation_order_trackedPLUSindexed() {
int ret_val = -1;
int crt_order_flags = HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED;
int crtorderflags = 0;
try {
ret_val = H5.H5Pset_link_creation_order(fcpl_id, crt_order_flags);
crtorderflags = H5.H5Pget_link_creation_order(fcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_link_creation_order: " + err);
}
assertTrue("testH5Pset_link_creation_order_trackedPLUSindexed",ret_val >= 0);
assertEquals(crt_order_flags, crtorderflags);
}
@Test
public void testH5Pset_link_creation_order_tracked() {
int ret_val = -1;
int crtorderflags = 0;
try {
ret_val = H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED);
crtorderflags = H5.H5Pget_link_creation_order(fcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_link_creation_order: " + err);
}
assertTrue("testH5Pset_link_creation_order_tracked",ret_val >= 0);
assertEquals(HDF5Constants.H5P_CRT_ORDER_TRACKED, crtorderflags);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pset_link_creation_order_invalidvalue() throws Throwable {
H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
@Test
public void testH5Pget_attr_creation_order() {
int crt_order_flags = 0;
try {
crt_order_flags = H5.H5Pget_attr_creation_order(ocpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_attr_creation_order: " + err);
}
assertTrue("testH5Pget_attr_creation_order", crt_order_flags >= 0);
}
@Test
public void testH5Pset_attr_creation_order_trackedPLUSindexed() {
int ret_val = -1;
int crt_order_flags = HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED;
int crtorderflags = 0;
try {
ret_val = H5.H5Pset_attr_creation_order(ocpl_id, crt_order_flags);
crtorderflags = H5.H5Pget_attr_creation_order(ocpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_attr_creation_order: " + err);
}
assertTrue("testH5Pset_attr_creation_order_trackedPLUSindexed", ret_val >= 0);
assertEquals(crt_order_flags, crtorderflags);
}
@Test
public void testH5Pset_attr_creation_order_tracked() {
int ret_val = -1;
int crtorderflags = 0;
try {
ret_val = H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED);
crtorderflags = H5.H5Pget_attr_creation_order(ocpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_attr_creation_order: " + err);
}
assertTrue("testH5Pset_attr_creation_order_tracked", ret_val >= 0);
assertEquals(HDF5Constants.H5P_CRT_ORDER_TRACKED, crtorderflags);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pset_attr_creation_order_invalidvalue() throws Throwable {
H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
@Test
public void testH5Pset_copy_object() {
int cpy_option = -1;
try {
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_SHALLOW_HIERARCHY_FLAG);
cpy_option = H5.H5Pget_copy_object(ocp_plist_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_copy_object: " + err);
}
assertEquals(HDF5Constants.H5O_COPY_SHALLOW_HIERARCHY_FLAG, cpy_option);
try {
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
cpy_option = H5.H5Pget_copy_object(ocp_plist_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_copy_object: " + err);
}
assertEquals(HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG, cpy_option);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pset_copy_object_invalidobject() throws Throwable {
H5.H5Pset_copy_object(HDF5Constants.H5P_DEFAULT, HDF5Constants.H5O_COPY_SHALLOW_HIERARCHY_FLAG);
}
@Test
public void testH5Pset_create_intermediate_group() {
int ret_val = -1;
try {
ret_val = H5.H5Pset_create_intermediate_group(lcpl_id, true);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_create_intermediate_group: " + err);
}
assertTrue(ret_val>=0);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pset_create_intermediate_group_invalidobject() throws Throwable {
H5.H5Pset_create_intermediate_group(ocp_plist_id, true);
}
@Test
public void testH5Pget_create_intermediate_group() {
boolean flag = false;
try {
H5.H5Pset_create_intermediate_group(lcpl_id, true);
flag = H5.H5Pget_create_intermediate_group(lcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_create_intermediate_group: " + err);
}
assertEquals(true, flag);
}
@Test
public void testH5Pget_create_intermediate_group_notcreated() {
boolean flag = true;
try {
flag = H5.H5Pget_create_intermediate_group(lcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_create_intermediate_group_notcreated: " + err);
}
assertEquals(false, flag);
}
@Test
public void testH5Pset_data_transform() {
String expression = "(5/9.0)*(x-32)";
int ret_val = -1;
try {
ret_val= H5.H5Pset_data_transform(plist_id, expression);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_data_transform: " + err);
}
assertTrue(ret_val>=0);
}
@Test(expected = NullPointerException.class)
public void testH5Pset_data_transform_NullExpression() throws Throwable {
H5.H5Pset_data_transform(plist_id, null);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pset_data_transform_InvalidExpression1() throws Throwable {
H5.H5Pset_data_transform(plist_id, "");
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pset_data_transform_InvalidExpression2() throws Throwable {
H5.H5Pset_data_transform(plist_id, "hello");
}
@Test
public void testH5Pget_data_transform() {
String expression = "(5/9.0)*(x-32)";
String [] express = {""};
long express_size = 0;
long size = 20;
try {
H5.H5Pset_data_transform(plist_id, expression);
express_size = H5.H5Pget_data_transform(plist_id, express, size);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_data_transform: " + err);
}
assertTrue(express_size>=0);
assertTrue("The data transform expression: ", expression.equals(express[0]));
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pget_data_transform_ExpressionNotSet() throws Throwable {
String [] express = {""};
H5.H5Pget_data_transform(plist_id, express, 20);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pget_data_transform_IllegalSize() throws Throwable {
String [] express = {""};
H5.H5Pset_data_transform(plist_id, "(5/9.0)*(x-32)");
H5.H5Pget_data_transform(plist_id, express, 0);
}
@Test
public void testH5Pget_elink_acc_flags() {
int get_flags = -1;
try {
get_flags = H5.H5Pget_elink_acc_flags(gapl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_elink_acc_flags: " + err);
}
assertTrue("H5Pget_elink_acc_flags", get_flags >= 0);
assertEquals(HDF5Constants.H5F_ACC_DEFAULT, get_flags);
}
@Test
public void testH5Pset_elink_acc_flags() {
int get_flags = -1;
int ret_val = -1;
try {
ret_val = H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_RDWR);
get_flags = H5.H5Pget_elink_acc_flags(lapl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_elink_acc_flags: " + err);
}
assertTrue("H5Pset_elink_acc_flags", ret_val >= 0);
assertEquals(HDF5Constants.H5F_ACC_RDWR, get_flags);
}
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Pset_elink_acc_flags_InvalidFlag1() throws Throwable {
H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_TRUNC);
}
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Pset_elink_acc_flags_InvalidFlag2() throws Throwable {
H5.H5Pset_elink_acc_flags(lapl_id, -1);
}
@Test
public void testH5Pset_link_phase_change() {
int ret_val = -1;
try {
ret_val = H5.H5Pset_link_phase_change(fcpl_id , 2, 2);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_link_phase_change: " + err);
}
assertTrue("H5Pset_link_phase_change", ret_val >= 0);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_link_phase_change_Highmax_Compact() throws Throwable {
H5.H5Pset_link_phase_change(fcpl_id , 70000000, 3);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_link_phase_change_max_compactLESSTHANmin_dense() throws Throwable {
H5.H5Pset_link_phase_change(fcpl_id , 5, 6);
}
@Test
public void testH5Pget_link_phase_change() {
int ret_val = -1;
int[] links = new int[2];
try {
ret_val = H5.H5Pget_link_phase_change(fcpl_id, links);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_link_phase_change: " + err);
}
assertTrue("testH5Pget_link_phase_change", ret_val >= 0);
assertEquals("Default value of maximum compact storage", 8, links[0]);
assertEquals("Default value of minimum dense storage", 6, links[1]);
}
@Test
public void testH5Pget_link_phase_change_EqualsSet() {
int[] links = new int[2];
try {
H5.H5Pset_link_phase_change(fcpl_id , 10, 7);
H5.H5Pget_link_phase_change(fcpl_id, links);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_link_phase_change_EqualsSet: " + err);
}
assertEquals("Value of maximum compact storage set", 10, links[0]);
assertEquals("Value of minimum dense storage set", 7, links[1]);
}
@Test(expected = NullPointerException.class)
public void testH5Pget_link_phase_change_Null() throws Throwable {
H5.H5Pget_link_phase_change(fcpl_id, null);
}
@Test
public void testH5Pget_attr_phase_change() {
int ret_val = -1;
int[] attributes = new int[2];
try {
ret_val = H5.H5Pget_attr_phase_change(ocpl_id, attributes);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_attr_phase_change: " + err);
}
assertTrue("testH5Pget_attr_phase_change", ret_val >= 0);
assertEquals("Default value of the max. no. of attributes stored in compact storage", 8, attributes[0]);
assertEquals("Default value of the min. no. of attributes stored in dense storage", 6, attributes[1]);
try {
H5.H5Pset_attr_phase_change(ocpl_id, 9, 5);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_attr_phase_change: " + err);
}
try {
ret_val = H5.H5Pget_attr_phase_change(ocpl_id, attributes);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_attr_phase_change: " + err);
}
assertTrue("testH5Pget_attr_phase_change", ret_val >= 0);
assertEquals("Default value of the max. no. of attributes stored in compact storage", 9, attributes[0]);
assertEquals("Default value of the min. no. of attributes stored in dense storage", 5, attributes[1]);
}
@Test
public void testH5Pget_shared_mesg_phase_change() {
int ret_val = -1;
int[] size = new int[2];
try {
ret_val = H5.H5Pget_shared_mesg_phase_change(fcpl_id, size);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_shared_mesg_phase_change: " + err);
}
assertTrue("testH5Pget_shared_mesg_phase_change", ret_val >= 0);
}
@Test
public void testH5Pget_shared_mesg_phase_change_EqualsSET() {
int[] size = new int[2];
try {
H5.H5Pset_shared_mesg_phase_change(fcpl_id,50, 40);
H5.H5Pget_shared_mesg_phase_change(fcpl_id, size);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_shared_mesg_phase_change_EqualsSET: " + err);
}
assertEquals("Value of maximum list set", 50, size[0]);
assertEquals("Value of minimum btree set", 40, size[1]);
}
@Test
public void testH5Pset_shared_mesg_phase_change() {
int ret_val = -1;
try {
ret_val = H5.H5Pset_shared_mesg_phase_change(fcpl_id,2, 1);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_shared_mesg_phase_change: " + err);
}
assertTrue("H5Pset_shared_mesg_phase_change", ret_val >= 0);
}
@Test(expected = IllegalArgumentException.class)
public void testH5PH5Pset_shared_mesg_phase_change_HighMaxlistValue() throws Throwable {
H5.H5Pset_shared_mesg_phase_change(fcpl_id, 5001, 4000);
}
@Test(expected = IllegalArgumentException.class)
public void testH5PH5Pset_shared_mesg_phase_change_HighMinbtreeValue() throws Throwable {
H5.H5Pset_shared_mesg_phase_change(fcpl_id, 5000, 5001);
}
@Test(expected = IllegalArgumentException.class)
public void testH5PH5Pset_shared_mesg_phase_change_MinbtreeGreaterThanMaxlist() throws Throwable {
H5.H5Pset_link_phase_change(fcpl_id , 3, 7);
}
@Test
public void testH5Pget_shared_mesg_nindexes() {
int nindexes = -1;
try {
nindexes = H5.H5Pget_shared_mesg_nindexes(fcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_shared_mesg_nindexes: " + err);
}
assertTrue("H5Pget_shared_mesg_nindexes", nindexes >= 0);
}
@Test
public void testH5Pset_shared_mesg_nindexes() {
int nindexes = -1;
int ret_val = -1;
try {
ret_val = H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7);
nindexes = H5.H5Pget_shared_mesg_nindexes(fcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_shared_mesg_nindexes: " + err);
}
assertTrue("H5Pset_shared_mesg_nindexes", ret_val >= 0);
assertEquals("Value of nindexes is equal to value set",7 ,nindexes);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_shared_mesg_nindexes_InvalidHIGHnindexes()throws Throwable {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 9);
}
@Test
public void testH5Pset_shared_mesg_index() {
int ret_val = -1;
try {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 2);
ret_val = H5.H5Pset_shared_mesg_index(fcpl_id, 0,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_shared_mesg_index: " + err);
}
assertTrue("H5Pset_shared_mesg_index", ret_val >= 0);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_shared_mesg_index_Invalid_indexnum() throws Throwable {
H5.H5Pset_shared_mesg_index(fcpl_id, 2,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_shared_mesg_index_InvalidFlag() throws Throwable {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7);
H5.H5Pset_shared_mesg_index(fcpl_id, 2,HDF5Constants.H5O_SHMESG_ALL_FLAG + 1, 10);
}
@Test
public void testH5Pget_shared_mesg_index() {
int ret_val = -1;
int[] mesg_info = new int[2];
try {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 2);
H5.H5Pset_shared_mesg_index(fcpl_id, 0,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
ret_val = H5.H5Pget_shared_mesg_index(fcpl_id, 0, mesg_info);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_shared_mesg_index: " + err);
}
assertTrue("H5Pget_shared_mesg_index", ret_val >= 0);
assertEquals("Type of message", HDF5Constants.H5O_SHMESG_ATTR_FLAG, mesg_info[0]);
assertEquals("minimum message size", 10, mesg_info[1]);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pget_shared_mesg_index_Invalid_indexnum() throws Throwable {
int[] mesg_info = new int[2];
H5.H5Pget_shared_mesg_index(fcpl_id, 0, mesg_info);
}
@Test
public void testH5Pset_local_heap_size_hint() {
int ret_val = -1;
try {
ret_val = H5.H5Pset_local_heap_size_hint(gcpl_id, 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_local_heap_size_hint: " + err);
}
assertTrue("H5Pset_local_heap_size_hint", ret_val >= 0);
}
@Test
public void testH5Pget_local_heap_size_hint() {
long size_hint = -1;
try {
size_hint = H5.H5Pget_local_heap_size_hint(gcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_local_heap_size_hint: " + err);
}
assertTrue("H5Pget_local_heap_size_hint", size_hint >= 0);
}
@Test
public void testH5Pset_nbit() {
int ret_val = -1;
try {
ret_val = H5.H5Pset_nbit(ocpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_nbit: " + err);
}
assertTrue("H5Pset_nbit", ret_val >= 0);
}
@Test
public void testH5Pset_scaleoffset() {
int ret_val = -1;
int scale_type = HDF5Constants.H5Z_SO_FLOAT_DSCALE;
int scale_factor = HDF5Constants.H5Z_SO_INT_MINBITS_DEFAULT;
try {
ret_val = H5.H5Pset_scaleoffset(ocpl_id, scale_type, scale_factor);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_scaleoffset: " + err);
}
assertTrue("H5Pset_scaleoffset", ret_val >= 0);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_scaleoffset_Invalidscale_type() throws Throwable {
H5.H5Pset_scaleoffset(ocpl_id, 3, 1);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_scaleoffset_Invalidscale_factor() throws Throwable {
H5.H5Pset_scaleoffset(ocpl_id, HDF5Constants.H5Z_SO_INT, -1);
}
@Test
public void testH5Pset_est_link_info() {
int ret_val = -1;
try {
ret_val = H5.H5Pset_est_link_info(gcpl_id, 0,10);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_est_link_info: " + err);
}
assertTrue("H5Pset_est_link_info", ret_val >= 0);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Pset_est_link_info_InvalidValues() throws Throwable {
H5.H5Pset_est_link_info(gcpl_id, 100000,10);
}
@Test
public void testH5Pget_est_link_info() {
int ret_val = -1;
int[] link_info = new int[2];
try {
ret_val = H5.H5Pget_est_link_info(gcpl_id, link_info);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_est_link_info: " + err);
}
assertTrue("H5Pget_est_link_info", ret_val >= 0);
}
@Test
public void testH5Pset_elink_prefix() {
int ret_val = -1;
String prefix = "tmp";
try {
ret_val = H5.H5Pset_elink_prefix(plapl_id, prefix);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_elink_prefix: " + err);
}
assertTrue("H5Pset_elink_prefix", ret_val >= 0);
}
@Test(expected = NullPointerException.class)
public void testH5Pset_elink_prefix_null() throws Throwable{
H5.H5Pset_elink_prefix(plapl_id, null);
}
@Test
public void testH5Pget_elink_prefix() {
String prefix = "tmp";
String[] pre = {""};
long prefix_size = 0;
try {
H5.H5Pset_elink_prefix(plapl_id, prefix);
prefix_size = H5.H5Pget_elink_prefix(plapl_id, pre);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_elink_prefix: " + err);
}
assertTrue(prefix_size>=0);
assertTrue("The prefix: ", prefix.equals(pre[0]));
}
@Test(expected = NullPointerException.class)
public void testH5Pget_elink_prefix_null() throws Throwable {
H5.H5Pget_elink_prefix(plapl_id, null);
}
@Test(expected = NullPointerException.class)
public void testH5Pget_version_null() throws Throwable {
H5.H5Pget_version(fcpl_id, null);
}
@Test
public void testH5Pget_version() {
int[] version_info = {255,255,255,255};
try {
_createH5File(fcpl_id, fapl_id);
H5.H5Pget_version(fcpl_id, version_info);
deleteH5file();
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_version: " + err);
}
assertTrue("super block version: "+version_info[0], version_info[0] == 0);
assertTrue("global freelist version: "+version_info[1], version_info[1] == 0);
assertTrue("symbol table version: "+version_info[2], version_info[2] == 0);
assertTrue("shared object header version: "+version_info[3], version_info[3] == 0);
}
@Test(expected = NullPointerException.class)
public void testH5Pget_userblock_null() throws Throwable {
H5.H5Pget_userblock(fcpl_id, null);
}
@Test
public void testH5P_userblock() {
int[] version_info = {255,255,255,255};
long[] size = {0};
try {
H5.H5Pset_userblock(fcpl_id, 1024);
_createH5File(fcpl_id, fapl_id);
/* Close FCPL */
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5.H5Pget_version(fcpl_id, version_info);
H5.H5Pget_userblock(fcpl_id, size);
deleteH5file();
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_userblock: " + err);
}
assertTrue("super block version: "+version_info[0], version_info[0] == 0);
assertTrue("global freelist version: "+version_info[1], version_info[1] == 0);
assertTrue("symbol table version: "+version_info[2], version_info[2] == 0);
assertTrue("shared object header version: "+version_info[3], version_info[3] == 0);
assertTrue("user block size: "+size[0], size[0] == 1024);
}
@Test(expected = NullPointerException.class)
public void testH5Pget_sizes_null() throws Throwable {
H5.H5Pget_sizes(fcpl_id, null);
}
@Test
public void testH5P_sizes() {
int[] version_info = {255,255,255,255};
long[] size = {0,0};
try {
H5.H5Pset_sizes(fcpl_id, 4, 8);
_createH5File(fcpl_id, fapl_id);
/* Close FCPL */
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5.H5Pget_version(fcpl_id, version_info);
H5.H5Pget_sizes(fcpl_id, size);
deleteH5file();
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_sizes: " + err);
}
assertTrue("super block version: "+version_info[0], version_info[0] == 0);
assertTrue("global freelist version: "+version_info[1], version_info[1] == 0);
assertTrue("symbol table version: "+version_info[2], version_info[2] == 0);
assertTrue("shared object header version: "+version_info[3], version_info[3] == 0);
assertTrue("sizeof_addr size: "+size[0], size[0] == 4);
assertTrue("sizeof_size size: "+size[1], size[1] == 8);
}
@Test(expected = NullPointerException.class)
public void testH5Pget_sym_k_null() throws Throwable {
H5.H5Pget_sym_k(fcpl_id, null);
}
@Test
public void testH5P_sym_k() {
int[] version_info = {255,255,255,255};
int[] size = {0,0};
try {
H5.H5Pset_sym_k(fcpl_id, 32, 8);
_createH5File(fcpl_id, fapl_id);
/* Close FCPL */
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5.H5Pget_version(fcpl_id, version_info);
H5.H5Pget_sym_k(fcpl_id, size);
deleteH5file();
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_sym_k: " + err);
}
assertTrue("super block version: "+version_info[0], version_info[0] == 0);
assertTrue("global freelist version: "+version_info[1], version_info[1] == 0);
assertTrue("symbol table version: "+version_info[2], version_info[2] == 0);
assertTrue("shared object header version: "+version_info[3], version_info[3] == 0);
assertTrue("symbol table tree rank: "+size[0], size[0] == 32);
assertTrue("symbol table node size: "+size[1], size[1] == 8);
}
@Test(expected = NullPointerException.class)
public void testH5Pget_istore_k_null() throws Throwable {
H5.H5Pget_istore_k(fcpl_id, null);
}
@Test
public void testH5P_istore_k() {
int[] version_info = {255,255,255,255};
int[] size = {0};
try {
H5.H5Pset_istore_k(fcpl_id, 64);
_createH5File(fcpl_id, fapl_id);
/* Close FCPL */
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5.H5Pget_version(fcpl_id, version_info);
H5.H5Pget_istore_k(fcpl_id, size);
deleteH5file();
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_sym_k: " + err);
}
assertTrue("super block version: "+version_info[0], version_info[0] == 1);
assertTrue("global freelist version: "+version_info[1], version_info[1] == 0);
assertTrue("symbol table version: "+version_info[2], version_info[2] == 0);
assertTrue("shared object header version: "+version_info[3], version_info[3] == 0);
assertTrue("chunked storage b-tree 1/2-rank: "+size[0], size[0] == 64);
}
@Test
public void testH5P_obj_track_times() {
boolean default_ret_val = false;
boolean ret_val = true;
try {
default_ret_val = H5.H5Pget_obj_track_times(ocpl_id);
H5.H5Pset_obj_track_times(ocpl_id, false);
ret_val = H5.H5Pget_obj_track_times(ocpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_obj_track_times: " + err);
}
assertTrue("H5Pget_obj_track_times default", default_ret_val);
assertFalse("H5Pget_obj_track_times", ret_val);
}
@Test
public void testH5Pget_char_encoding() {
int char_encoding = 0;
try {
char_encoding = H5.H5Pget_char_encoding(acpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_char_encoding: " + err);
}
assertTrue("testH5Pget_char_encoding", char_encoding == HDF5Constants.H5T_CSET_ASCII);
try {
H5.H5Pset_char_encoding(acpl_id, HDF5Constants.H5T_CSET_UTF8);
char_encoding = H5.H5Pget_char_encoding(acpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_char_encoding: " + err);
}
assertTrue("testH5Pget_char_encoding", char_encoding == HDF5Constants.H5T_CSET_UTF8);
}
@Test
public void testH5P_fill_time() {
int[] fill_time = {0};
try {
H5.H5Pget_fill_time(ocpl_id, fill_time);
assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_IFSET);
H5.H5Pset_fill_time(ocpl_id, HDF5Constants.H5D_FILL_TIME_ALLOC);
H5.H5Pget_fill_time(ocpl_id, fill_time);
assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_ALLOC);
H5.H5Pset_fill_time(ocpl_id, HDF5Constants.H5D_FILL_TIME_NEVER);
H5.H5Pget_fill_time(ocpl_id, fill_time);
assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_NEVER);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_fill_time: " + err);
}
}
@Test
public void testH5P_alloc_time() {
int[] alloc_time = {0};
try {
H5.H5Pget_alloc_time(ocpl_id, alloc_time);
assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_LATE);
H5.H5Pset_alloc_time(ocpl_id, HDF5Constants.H5D_ALLOC_TIME_EARLY);
H5.H5Pget_alloc_time(ocpl_id, alloc_time);
assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_EARLY);
H5.H5Pset_alloc_time(ocpl_id, HDF5Constants.H5D_ALLOC_TIME_INCR);
H5.H5Pget_alloc_time(ocpl_id, alloc_time);
assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_INCR);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_alloc_time: " + err);
}
}
@Test
public void testH5P_fill_value() {
int[] fill_value = {-1};
int[] fill_value_status = {-1};
try {
H5.H5Pfill_value_defined(ocpl_id, fill_value_status);
assertTrue("fill_value_status: "+fill_value_status[0], fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_DEFAULT);
H5.H5Pget_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
assertTrue("fill_value: "+fill_value[0], fill_value[0] == 0);
fill_value[0] = 255;
H5.H5Pset_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
H5.H5Pget_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
assertTrue("fill_value: "+fill_value[0], fill_value[0] == 255);
H5.H5Pfill_value_defined(ocpl_id, fill_value_status);
assertTrue("fill_value_status: "+fill_value_status[0], fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_USER_DEFINED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_fill_value: " + err);
}
}
@Test
public void testH5P_layout() {
int layout_type = -1;
try {
layout_type = H5.H5Pget_layout(ocpl_id);
assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_CONTIGUOUS);
H5.H5Pset_layout(ocpl_id, HDF5Constants.H5D_COMPACT);
layout_type = H5.H5Pget_layout(ocpl_id);
assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_COMPACT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_layout: " + err);
}
}
@Test
public void testH5P_chunk() {
long[] chunk_size = {0,0};
long[] chunk_new_size = {2,3};
int layout_type = -1;
try {
H5.H5Pset_chunk(ocpl_id, 2, chunk_new_size);
H5.H5Pget_chunk(ocpl_id, 2, chunk_size);
assertTrue("chunk: "+chunk_size[0], chunk_size[0] == chunk_new_size[0]);
assertTrue("chunk: "+chunk_size[1], chunk_size[1] == chunk_new_size[1]);
layout_type = H5.H5Pget_layout(ocpl_id);
assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_CHUNKED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_chunk: " + err);
}
}
@Test
public void testH5P_file_space_strategy() {
long[] threshold = {0};
boolean[] persist = {false};
int strategy = 0;
try {
strategy = H5.H5Pget_file_space_strategy(fcpl_id, persist, threshold);
assertTrue("strategy(default): "+strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_FSM_AGGR);
assertTrue("persist(default): "+persist[0], persist[0] == false);
assertTrue("theshold(default): "+threshold[0], threshold[0] == 1);
H5.H5Pset_file_space_strategy(fcpl_id, HDF5Constants.H5F_FSPACE_STRATEGY_PAGE, true, 1);
strategy = H5.H5Pget_file_space_strategy(fcpl_id, persist, threshold);
assertTrue("strategy: "+strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_PAGE);
assertTrue("persist: "+persist[0], persist[0] == true);
assertTrue("theshold: "+threshold[0], threshold[0] == 1);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5P_file_space_strategy: " + err);
}
}
@Test
public void testH5P_file_space_page_size() {
long page_size = 0;
try {
page_size = H5.H5Pget_file_space_page_size(fcpl_id);
assertTrue("page_size(default): "+page_size, page_size == 4096);
H5.H5Pset_file_space_page_size(fcpl_id, 512);
page_size = H5.H5Pget_file_space_page_size(fcpl_id);
assertTrue("page_size: "+page_size, page_size == 512);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5P_file_space_page_size: " + err);
}
}
@Test
public void testH5Pset_efile_prefix() {
String prefix = "tmp";
try {
H5.H5Pset_efile_prefix(lapl_id, prefix);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_efile_prefix: " + err);
}
}
@Test(expected = NullPointerException.class)
public void testH5Pset_efile_prefix_null() throws Throwable{
H5.H5Pset_efile_prefix(lapl_id, null);
}
@Test
public void testH5Pget_efile_prefix() {
String prefix = "tmp";
String pre = "";
try {
H5.H5Pset_efile_prefix(lapl_id, prefix);
pre = H5.H5Pget_efile_prefix(lapl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_efile_prefix: " + err);
}
assertTrue("The prefix: ", prefix.equals(pre));
}
@Ignore
public void testH5P_chunk_opts() {
int chunk_opts = -1;
try {
chunk_opts = H5.H5Pget_chunk_opts(ocpl_id);
assertTrue("chunk_opts: "+chunk_opts, chunk_opts == 0);
H5.H5Pset_chunk_opts(ocpl_id, HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS);
chunk_opts = H5.H5Pget_chunk_opts(ocpl_id);
assertTrue("chunk_opts: "+chunk_opts, chunk_opts == HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pget_lchunk_opts: " + err);
}
}
}
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