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bb392083b2
Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command
line, allowing the group structure for a file to be created in a script. This
tool closely follows the 'mkdir' command line tool in UNIX/Linux.
Allow tool library applications to pass a FAPL to the h5tool_fopen() call,
giving some additional flexibility to tools which are adding objects to an
existing HDF5 file (like h5copy & h5mkgrp).
Fix missing files in MANIFEST from previous checkin(s).
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
229 lines
6.7 KiB
Bash
229 lines
6.7 KiB
Bash
#! /bin/sh
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#
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# Copyright by The HDF Group.
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# Copyright by the Board of Trustees of the University of Illinois.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the files COPYING and Copyright.html. COPYING can be found at the root
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# of the source code distribution tree; Copyright.html can be found at the
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# root level of an installed copy of the electronic HDF5 document set and
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# is linked from the top-level documents page. It can also be found at
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# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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# access to either file, you may request a copy from help@hdfgroup.org.
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#
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# Tests for the h5copy tool
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#
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# Pedro Vicente Nunes (pvn@hdfgroup.org), Albert Cheng (acheng@hdfgroup.org)
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# Thursday, July 20, 2006
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#
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H5COPY=h5copy # The tool name
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H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary
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H5DIFF=h5diff # The h5diff tool name
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H5DIFF_BIN=`pwd`/../h5diff/$H5DIFF # The path of the h5diff tool binary
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H5LS=h5ls # The h5ls tool name
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H5LS_ARGS=-vr # Arguments to the h5ls tool
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H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary
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nerrors=0
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verbose=yes
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SRCFILE=h5copytst.h5
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CMP='cmp -s'
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DIFF='diff -c'
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# The build (current) directory might be different than the source directory.
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if test -z "$srcdir"; then
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srcdir=.
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fi
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test -d ../testfiles || mkdir ../testfiles
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Testing".
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TESTING()
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{
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SPACES=" "
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echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
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}
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Verifying".
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#
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VERIFY()
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{
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SPACES=" "
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echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Verifying".
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#
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VERIFY_H5LS()
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{
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SPACES=" "
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echo "Verifying h5ls file structure $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Run a test and print PASS or *FAIL*. If h5copy can complete
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# with exit status 0, consider it pass. If a test fails then increment
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# the `nerrors' global variable.
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# Assumed arguments:
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# $1 is -i
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# $2 is input file
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# $3 is -o
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# $4 is output file
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# $* everything else arguments for h5copy.
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TOOLTEST()
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{
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runh5diff=yes
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if [ "$1" = -i ]; then
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inputfile=$2
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else
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runh5diff=no
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fi
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if [ "$3" = -o ]; then
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outputfile=$4
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else
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runh5diff=no
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fi
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TESTING $H5COPY $@
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(
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echo "#############################"
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echo " output for '$H5COPY $@'"
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echo "#############################"
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$RUNSERIAL $H5COPY_BIN $@
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) > output.out
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RET=$?
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if [ $RET != 0 ]; then
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echo "*FAILED*"
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echo "failed result is:"
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cat output.out
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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fi
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if [ $runh5diff != no ]; then
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H5DIFFTEST $inputfile $outputfile
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fi
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}
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# Call the h5diff tool
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#
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H5DIFFTEST()
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{
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VERIFY $@
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if [ "`uname -s`" = "TFLOPS O/S" ]; then
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$RUNSERIAL $H5DIFF_BIN $@ -q
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else
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$RUNSERIAL $H5DIFF_BIN "$@" -q
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fi
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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fi
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}
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# Call the h5ls tool to verify the correct output data in the destination file
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#
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H5LSTEST()
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{
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expect="$srcdir/../testfiles/`basename $1 .h5`.ls"
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actual="../testfiles/`basename $1 .h5`.out"
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# Stderr is included in stdout so that the diff can detect
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# any unexpected output from that stream too.
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VERIFY_H5LS $@
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(
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echo "#############################"
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echo "Expected output for '$H5LS $@'"
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echo "#############################"
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$RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
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) 2>&1 >$actual
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if [ ! -f $expect ]; then
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# Create the expect file if it doesn't yet exist.
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echo " CREATED"
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cp $actual $expect
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elif $CMP $expect $actual; then
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echo " PASSED"
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else
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echo "*FAILED*"
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echo " Expected result (*.ls) differs from actual result (*.out)"
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
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fi
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}
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# Copy single datasets of various forms from one group to another,
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# adding object copied to the destination file each time
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#
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# Assumed arguments:
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# $1 is test "variation" (a single letter, normally)
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# $2 is group within source file
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# $3 is group within destination file
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COPYOBJECTS()
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{
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TESTFILE=$srcdir/../testfiles/$SRCFILE
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FILEOUT="../testfiles/`basename $SRCFILE .h5`.$1.out.h5"
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# Remove any output file left over from previous test run
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rm -f $FILEOUT
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# Test copying various forms of datasets
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"simple -d "$3"simple
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"chunk -d "$3"chunk
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"compact -d "$3"compact
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"compound -d "$3"compound
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"compressed -d "$3"compressed
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"named_vl -d "$3"named_vl
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"nested_vl -d "$3"nested_vl
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# Test copying & renaming dataset
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"compound -d "$3"rename
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# Test copying empty & "full" groups
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"grp_empty -d "$3"grp_empty
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"grp_dsets -d "$3"grp_dsets
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# Test copying & renaming group
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TOOLTEST -i $TESTFILE -o $FILEOUT -v -s "$2"grp_dsets -d "$3"grp_rename
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# Verify that the file created above is correct
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H5LSTEST $FILEOUT
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# Remove output file created, if the "no cleanup" environment variable is
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# not defined
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if [ x$HDF5_NOCLEANUP = "x" ]; then
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rm -f $FILEOUT
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fi
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}
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##############################################################################
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### T H E T E S T S ###
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##############################################################################
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# Copy objects from root group of source file to root of destination file
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# (with implicit root group paths)
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COPYOBJECTS a "" ""
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# Copy objects from root group of source file to root of destination file
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# (with explicit root group paths)
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COPYOBJECTS b "/" "/"
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if test $nerrors -eq 0 ; then
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echo "All h5copy tests passed."
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fi
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exit $nerrors
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