hdf5/c++/test/titerate.cpp

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the files COPYING and Copyright.html.  COPYING can be found at the root   *
 * of the source code distribution tree; Copyright.html can be found at the  *
 * root level of an installed copy of the electronic HDF5 document set and   *
 * is linked from the top-level documents page.  It can also be found at     *
 * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
 * access to either file, you may request a copy from help@hdfgroup.org.     *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/*****************************************************************************
   FILE
   titerate.cpp - HDF5 C++ testing iterate related functionality

 ***************************************************************************/
#ifdef OLD_HEADER_FILENAME
#include <iostream.h>
#else
#include <iostream>
#endif
using std::cerr;
using std::endl;

#include <string>
#include "H5Cpp.h"      // C++ API header file
using namespace H5;

#include "h5test.h"
#include "h5cpputil.h"  // C++ utilility header file

/* Number of datasets for group iteration test */
#define NDATASETS 50

/* Number of attributes for attribute iteration test */
//#define NATTR 50

/* Number of groups for second group iteration test */
//#define ITER_NGROUPS 150

/* General maximum length of names used */
#define NAMELEN     80

/* 1-D dataset with fixed dimensions */
//#define SPACE1_RANK     1
//#define SPACE1_DIM1     4

const H5std_string        FILE_ITERATE("titerate.h5");
const H5std_string        GROUP1("Top Group");
const H5std_string        GROUP1_PATH("/Top Group");
const H5std_string        GROUP1_1("Sub-Group 1.1");
const H5std_string        GROUP1_1_PATH("/Top Group/Sub-Group 1.1");
const H5std_string        GROUP1_2("Sub-Group 1.2");
const H5std_string        GROUP1_2_PATH("/Top Group/Sub-Group 1.2");
const H5std_string        DSET_DEFAULT_NAME("default");
const H5std_string        DSET_IN_FILE("Dataset in File");
const H5std_string        DSET_IN_FILE_PATH("/Dataset in File");
const H5std_string        DSET_IN_GRP1("Dataset in Group 1");
const H5std_string        DSET_IN_GRP1_PATH("/Top Group/Dataset in Group 1");
const H5std_string        DSET_IN_GRP1_2("Dataset in Group 1.2");
const H5std_string        DSET_IN_GRP1_2_PATH("/Top Group/Sub-Group 1.2/Dataset in Group 1.2");

typedef enum {
    RET_ZERO,
    RET_TWO,
    RET_CHANGE,
    RET_CHANGE2
} iter_enum;

/* Custom group iteration callback data */
typedef struct {
    char name[NAMELEN];     /* The name of the object */
    H5O_type_t type;        /* The type of the object */
    iter_enum command;      /* The type of return value */
} iter_info;

int iter_strcmp(const void *s1, const void *s2);

/****************************************************************
**
**  iter_strcmp(): String comparison routine for qsort
**
****************************************************************/
int iter_strcmp(const void *s1, const void *s2)
{
    return(HDstrcmp(*(const char * const *)s1,*(const char * const *)s2));
}

/****************************************************************
**
**  liter_cb(): Custom link iteration callback routine.
**
****************************************************************/
static herr_t
liter_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_info,
    void *op_data)
{
    iter_info *info = (iter_info *)op_data;
    static int count = 0;
    static int count2 = 0;

    HDstrcpy(info->name, name);

    switch(info->command) {
        case RET_ZERO:
            return(0);

        case RET_TWO:
            return(2);

        case RET_CHANGE:
            count++;
            return(count > 10 ? 1 : 0);

        case RET_CHANGE2:
            count2++;
            return(count2 > 10 ? 1 : 0);

        default:
            printf("invalid iteration command");
            return(-1);
    } /* end switch */
} /* end liter_cb() */

/*-------------------------------------------------------------------------
 * Function:    test_iter_group
 *
 * Purpose      Tests group iteration
 *
 * Return       Success: 0
 *              Failure: -1
 *
 * Programmer   Binh-Minh Ribler
 *              Friday, September 9, 2016
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static void test_iter_group(FileAccPropList& fapl)
{
    int i;                  /* counting variable */
    hsize_t idx;            /* Index in the group */
    char name[NAMELEN];     /* temporary name buffer */
    char *lnames[NDATASETS + 2];/* Names of the links created */
    iter_info info;         /* Custom iteration information */
    herr_t ret;             /* Generic return value */

    /* Output message about test being performed */
    SUBTEST("Group Iteration");

    /* Create the test file with the datasets */
    try {
        // Create file
        H5File file(FILE_ITERATE, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);

        /* Test iterating over empty group */
        info.command = RET_ZERO;
        idx = 0;
        ret = H5Literate(file.getId(), H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info);
        verify_val(ret, SUCCEED, "H5Literate", __LINE__, __FILE__);

        DataType datatype(PredType::NATIVE_INT);

        // Create a scalar file space
        DataSpace filespace;

        for (i=0; i< NDATASETS; i++)
        {
        sprintf(name, "Dataset %d", i);

        // Create a dataset in the file
        DataSet dataset = file.createDataSet(name, datatype, filespace);

        /* Keep a copy of the dataset names */
        lnames[i] = HDstrdup(name);
        check_values(lnames[i], "HDstrdup returns NULL", __LINE__, __FILE__);

        } /* end for */

        /* Create a group and named datatype under root group for testing */
        Group grp(file.createGroup(GROUP1, 0));
        lnames[NDATASETS] = HDstrdup("grp");
        check_values(lnames[NDATASETS], "HDstrdup returns NULL", __LINE__, __FILE__);

        datatype.commit(file, "dtype");
        lnames[NDATASETS + 1] = HDstrdup("dtype");
        check_values(lnames[NDATASETS], "HDstrdup returns NULL", __LINE__, __FILE__);

        /* Sort the dataset names */
        HDqsort(lnames, (size_t)(NDATASETS + 2), sizeof(char *), iter_strcmp);


        /* Iterate through the datasets in the root group in various ways */

        // Open data file to read
        file.openFile(FILE_ITERATE, H5F_ACC_RDONLY, fapl);

        // Open the root group
        Group root_group(file.openGroup("/"));

        // Get the number of object in the root group
        hsize_t nobjs = root_group.getNumObjs();
        verify_val(nobjs, (hsize_t)(NDATASETS + 2), "H5Gget_info", __LINE__, __FILE__);

        H5std_string obj_name;
        for (i = 0; i < nobjs; i++)
        {
            //H5O_info_t oinfo;               /* Object info */

            obj_name = root_group.getObjnameByIdx(i);
        //ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT);

        //oinfo = root_group.childObjType((hsize_t)i, H5_INDEX_NAME, H5_ITER_INC,  ".");
        //ret = H5Oget_info_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT);
        } /* end for */

        // Attempted to iterate with invalid index, should fail
        try {
            obj_name = root_group.getObjnameByIdx(NDATASETS + 3);

            // Should FAIL but didn't, so throw an invalid action exception
            throw InvalidActionException("Group::getObjnameByIdx", "Attempt to iterate with invalid index");
        }
        catch (GroupIException& invalid_action) // invalid index
        {} // do nothing, exception expected

        // Attempted to iterate with negative index, should fail
        try {
            info.command = RET_ZERO;
            idx = (hsize_t)-1;
            obj_name = root_group.getObjnameByIdx(idx);

            // Should FAIL but didn't, so throw an invalid action exception
            throw InvalidActionException("Group::getObjnameByIdx", "Attempt to iterate with negative index");
        }
        catch (FileIException& invalid_action) // invalid index
        {} // do nothing, exception expected
        catch (GroupIException& invalid_action) // invalid index
        {} // do nothing, exception expected

        /* Test skipping exactly as many entries as in the group */
        try {
            info.command = RET_ZERO;
            idx = NDATASETS + 2;
            obj_name = root_group.getObjnameByIdx(idx);

            // Should FAIL but didn't, so throw an invalid action exception
            throw InvalidActionException("Group::getObjnameByIdx", "Attempt to iterate with negative index");
        }
        catch (FileIException& invalid_action) // invalid index
        {} // do nothing, exception expected
        catch (GroupIException& invalid_action) // invalid index
        {} // do nothing, exception expected

        /* Test skipping more entries than are in the group */
        try {
            info.command = RET_ZERO;
            idx = NDATASETS + 3;
            obj_name = root_group.getObjnameByIdx(idx);

            // Should FAIL but didn't, so throw an invalid action exception
            throw InvalidActionException("Group::getObjnameByIdx", "Attempt to iterate with negative index");
        }
        catch (FileIException& invalid_action) // invalid index
        {} // do nothing, exception expected
        catch (GroupIException& invalid_action) // invalid index
        {} // do nothing, exception expected

        /* Free the dataset names */
        for(i = 0; i< (NDATASETS + 2); i++)
            HDfree(lnames[i]);

        // Everything will be closed as they go out of scope

        PASSED();
    }        // try block

    // catch all other exceptions
    catch (Exception& E)
    {
        issue_fail_msg("test_iter_group", __LINE__, __FILE__);
    }

#if 0
    /* Test all objects in group, when callback always returns 0 */
    info.command = RET_ZERO;
    idx = 0;
    if((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0)
        TestErrPrintf("Group iteration function didn't return zero correctly!\n");

    /* Test all objects in group, when callback always returns 1 */
    /* This also tests the "restarting" ability, because the index changes */
    info.command = RET_TWO;
    i = 0;
    idx = 0;
    while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) {
        /* Verify return value from iterator gets propagated correctly */
        verify_val(ret, 2, "H5Literate", __LINE__, __FILE__);

        /* Increment the number of times "2" is returned */
        i++;

        /* Verify that the index is the correct value */
        verify_val(idx, (hsize_t)i, "H5Literate", __LINE__, __FILE__);
        if(idx > (NDATASETS + 2))
            TestErrPrintf("Group iteration function walked too far!\n");

        /* Verify that the correct name is retrieved */
        if(HDstrcmp(info.name, lnames[(size_t)(idx - 1)]) != 0)
            TestErrPrintf("Group iteration function didn't return name correctly for link - lnames[%u] = '%s'!\n", (unsigned)(idx - 1), lnames[(size_t)(idx - 1)]);
    } /* end while */
    verify_val(ret, -1, "H5Literate", __LINE__, __FILE__);

    if(i != (NDATASETS + 2))
        TestErrPrintf("%u: Group iteration function didn't perform multiple iterations correctly!\n", __LINE__);

    /* Test all objects in group, when callback changes return value */
    /* This also tests the "restarting" ability, because the index changes */
    info.command = new_format ? RET_CHANGE2 : RET_CHANGE;
    i = 0;
    idx = 0;
    while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) >= 0) {
        /* Verify return value from iterator gets propagated correctly */
        verify_val(ret, 1, "H5Literate", __LINE__, __FILE__);

        /* Increment the number of times "1" is returned */
        i++;

        /* Verify that the index is the correct value */
        verify_val(idx, (hsize_t)(i + 10), "H5Literate", __LINE__, __FILE__);
        if(idx > (NDATASETS + 2))
            TestErrPrintf("Group iteration function walked too far!\n");

        /* Verify that the correct name is retrieved */
        if(HDstrcmp(info.name, lnames[(size_t)(idx - 1)]) != 0)
            TestErrPrintf("Group iteration function didn't return name correctly for link - lnames[%u] = '%s'!\n", (unsigned)(idx - 1), lnames[(size_t)(idx - 1)]);
    } /* end while */
    verify_val(ret, -1, "H5Literate", __LINE__, __FILE__);

    if(i != 42 || idx != 52)
        TestErrPrintf("%u: Group iteration function didn't perform multiple iterations correctly!\n", __LINE__);

    ret = H5Fclose(file);
    CHECK(ret, FAIL, "H5Fclose");

#endif
} /* test_iter_group() */


/****************************************************************
**
**  printelems(): Open an attribute and verify that it has a 
**                the correct name
**
****************************************************************/
const H5std_string FILE_NAME("titerate.h5");
const H5std_string GRP_NAME("/Group_A");
const H5std_string FDATASET_NAME("file dset");
const H5std_string GDATASET_NAME("group dset");
const H5std_string ATTR_NAME("Units");
const H5std_string FATTR_NAME("F attr");
const H5std_string GATTR_NAME("G attr");
const int DIM1 = 2;
void printelems(const Group& group, const H5std_string& dsname, const H5std_string& atname)
{
    try
    {
        DataSet d1(group.openDataSet(dsname));
        DataSpace s1 = d1.getSpace();
        s1.close();
        d1.close();

        unsigned idx = 0;
        Attribute a1(group.openAttribute(idx));
        H5std_string aname = a1.getName();
        verify_val(aname, atname, "printelems", __LINE__, __FILE__);

        a1.close();
  }
   // catch failure caused by the DataSpace operations
   catch( DataSpaceIException error )
   {
        error.printError();
   }

   // catch failure caused by the Group operations
   catch( GroupIException error )
   {
        error.printError();
   }

   // catch failure caused by the DataSet operations
   catch( DataSetIException error )
   {
        error.printError();
   }
}

/*-------------------------------------------------------------------------
 * Function:    test_HDFFV_9920
 *
 * Purpose      Tests the fix for HDFFV-9920
 *
 * Programmer   Binh-Minh Ribler
 *              Friday, September 9, 2016
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static void test_HDFFV_9920()
{
   int attr_data[2] = { 100, 200};
   hsize_t dims[1] = { DIM1 };
   
   try
   {
        // Create a new file and a group in it
        H5File file( FILE_NAME, H5F_ACC_TRUNC );

        Group gr1(file.createGroup(GRP_NAME));

        // Create the data space for the attribute.
        DataSpace dspace = DataSpace (1, dims );

        DataSet fds = file.createDataSet(FDATASET_NAME, PredType::STD_I32BE, dspace);
        DataSet gds = gr1.createDataSet(GDATASET_NAME, PredType::STD_I32BE, dspace);

        // Create a file attribute and a group attribute. 
        Attribute fa1 = file.createAttribute(FATTR_NAME, PredType::STD_I32BE, 
                                                  dspace);
        Attribute ga1 = gr1.createAttribute(GATTR_NAME, PredType::STD_I32BE, 
                                                  dspace);
     
        // Write the attribute data. 
        fa1.write( PredType::NATIVE_INT, attr_data);
        ga1.write( PredType::NATIVE_INT, attr_data);

        fa1.close();
        ga1.close();
        fds.close();
        gds.close();

        // Verify the attributes have correct names.
        printelems(file, FDATASET_NAME, FATTR_NAME);
        printelems(gr1, GDATASET_NAME, GATTR_NAME);

   }  // end of try block

   // catch failure caused by the H5File operations
   catch( DataSpaceIException error )
   {
        error.printError();
   }

   // catch failure caused by the H5File operations
   catch( AttributeIException error )
   {
        error.printError();
   }

   // catch failure caused by the H5File operations
   catch( FileIException error )
   {
        error.printError();
   }

   // catch failure caused by the DataSet operations
   catch( DataSetIException error )
   {
        error.printError();
   }
}


/*-------------------------------------------------------------------------
 * Function:    test_iterate
 *
 * Purpose      Tests iterate functionality
 *
 * Return       Success: 0
 *              Failure: -1
 *
 * Programmer   Binh-Minh Ribler
 *              Tuesday, September 6, 2016
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
extern "C"
void test_iterate()
{
    // Output message about test being performed
    MESSAGE(5, ("Testing Iterate Feature\n"));

    // Create access property with latest library version.
    FileAccPropList fapl;
    fapl.setLibverBounds(H5F_LIBVER_LATEST, H5F_LIBVER_LATEST);

    test_iter_group(fapl);    // Test iterating groups
    test_HDFFV_9920();        // Test the fix of HDFFV-9920
    //test_iter_attr(fapl);   // Test iterating attributes

}   // test_iterate

/*-------------------------------------------------------------------------
 * Function:    cleanup_iterate
 *
 * Purpose      Cleanup temporary test files
 *
 * Return       none
 *
 * Programmer   (use C version)
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
extern "C"
void cleanup_iterate()
{
    HDremove(FILE_ITERATE.c_str());
} // cleanup_iterate