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89fbe00dec
* commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
589 lines
20 KiB
Java
589 lines
20 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertFalse;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5S {
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@Rule public TestName testname = new TestName();
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long H5sid = -1;
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int H5rank = 2;
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long H5dims[] = {5, 5};
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long H5maxdims[] = {10, 10};
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@Before
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public void createH5file()
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throws NullPointerException, HDF5Exception {
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assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
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System.out.print(testname.getMethodName());
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H5sid = H5.H5Screate_simple(H5rank, H5dims, H5maxdims);
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assertTrue("H5.H5Screate_simple_extent", H5sid > 0);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException {
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if (H5sid > 0) {
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try {H5.H5Sclose(H5sid);} catch (Exception ex) {}
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}
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System.out.println();
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}
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@Test
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public void testH5Sget_simple_extent_ndims() {
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int read_rank = -1;
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try {
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read_rank = H5.H5Sget_simple_extent_ndims(H5sid);
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assertTrue("H5.H5Sget_simple_extent_ndims", H5rank == read_rank);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_simple_extent_ndims: " + err);
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}
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}
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@Test
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public void testH5Sget_simple_extent_dims_null() {
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int read_rank = -1;
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try {
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read_rank = H5.H5Sget_simple_extent_dims(H5sid, null, null);
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assertTrue("H5.H5Sget_simple_extent_dims", H5rank == read_rank);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_simple_extent_dims: " + err);
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}
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}
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@Test
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public void testH5Sget_simple_extent_dims() {
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int read_rank = -1;
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long dims[] = {5, 5};
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long maxdims[] = {10, 10};
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try {
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read_rank = H5.H5Sget_simple_extent_dims(H5sid, dims, maxdims);
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assertTrue("H5.H5Sget_simple_extent_dims", H5rank == read_rank);
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assertTrue("H5.H5Sget_simple_extent_dims:dims", H5dims[0] == dims[0]);
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assertTrue("H5.H5Sget_simple_extent_dims:maxdims", H5maxdims[0] == maxdims[0]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_simple_extent_dims: " + err);
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}
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}
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@Test
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public void testH5Sget_simple_extent_npoints() {
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long num_elements = -1;
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try {
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num_elements = H5.H5Sget_simple_extent_npoints(H5sid);
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assertTrue("H5.H5Sget_simple_extent_npoints", (H5dims[0]*H5dims[1]) == num_elements);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_simple_extent_npoints: " + err);
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}
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}
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@Test
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public void testH5Sget_simple_extent_type() {
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int read_type = -1;
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try {
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read_type = H5.H5Sget_simple_extent_type(H5sid);
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assertTrue("H5.H5Sget_simple_extent_type", HDF5Constants.H5S_SIMPLE == read_type);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_simple_extent_type: " + err);
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}
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}
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@Test
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public void testH5Sis_simple() {
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boolean result = false;
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try {
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result = H5.H5Sis_simple(H5sid);
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assertTrue("H5.H5Sis_simple", result);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sis_simple: " + err);
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}
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}
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@Test
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public void testH5Sset_extent_simple() {
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long num_elements = -1;
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try {
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H5.H5Sset_extent_simple(H5sid, H5rank, H5maxdims, H5maxdims);
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num_elements = H5.H5Sget_simple_extent_npoints(H5sid);
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assertTrue("H5.H5Sget_simple_extent_npoints", (H5maxdims[0]*H5maxdims[1]) == num_elements);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sset_extent_simple: " + err);
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}
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}
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@Test
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public void testH5Sget_select_type() {
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int read_type = -1;
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try {
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read_type = H5.H5Sget_select_type(H5sid);
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assertTrue("H5.H5Sget_select_type", HDF5Constants.H5S_SEL_ALL == read_type);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sset_extent_none: " + err);
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}
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}
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@Test
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public void testH5Sset_extent_none() {
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int read_type = -1;
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try {
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H5.H5Sset_extent_none(H5sid);
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read_type = H5.H5Sget_simple_extent_type(H5sid);
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assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NO_CLASS == read_type);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sset_extent_none: " + err);
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}
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}
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@Test
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public void testH5Scopy() {
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long sid = -1;
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int read_rank = -1;
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try {
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sid = H5.H5Scopy(H5sid);
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assertTrue("H5.H5Sis_simple", sid > 0);
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read_rank = H5.H5Sget_simple_extent_ndims(sid);
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assertTrue("H5.H5Screate_simple_extent_ndims", H5rank == read_rank);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Scopy: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Sextent_copy() {
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long sid = -1;
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int class_type = -1;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_NULL);
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assertTrue("H5.H5Screate_null", sid > 0);
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H5.H5Sextent_copy(sid, H5sid);
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class_type = H5.H5Sget_simple_extent_type(sid);
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assertTrue("H5.H5Screate_null: type", class_type == HDF5Constants.H5S_SIMPLE);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sextent_copy: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Sextent_equal() {
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long sid = -1;
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boolean result = false;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_NULL);
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assertTrue("H5.H5Screate_null",sid > 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate: null " + err);
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}
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try {
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result = H5.H5Sextent_equal(sid, H5sid);
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assertFalse("H5.testH5Sextent_equal",result);
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H5.H5Sextent_copy(sid, H5sid);
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result = H5.H5Sextent_equal(sid, H5sid);
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assertTrue("H5.testH5Sextent_equal", result);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sextent_copy " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Sencode_decode_null_dataspace() {
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long sid = -1;
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long decoded_sid = -1;
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byte[] null_sbuf = null;
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boolean result = false;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_NULL);
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assertTrue("H5.H5Screate_null", sid > 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate: null " + err);
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}
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try {
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null_sbuf = H5.H5Sencode(sid);
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assertFalse("H5.testH5Sencode", null_sbuf==null);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sencode " + err);
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}
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finally {
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if(null_sbuf == null) {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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try {
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decoded_sid = H5.H5Sdecode(null_sbuf);
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assertTrue("H5.testH5Sdecode", decoded_sid>0);
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result = H5.H5Sextent_equal(sid, decoded_sid);
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assertTrue("H5.testH5Sextent_equal", result);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sdecode " + err);
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}
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finally {
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try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {}
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Sencode_decode_scalar_dataspace() {
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long sid = -1;
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long decoded_sid = -1;
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byte[] scalar_sbuf = null;
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boolean result = false;
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int iresult = -1;
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long lresult = -1;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
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assertTrue("H5.H5Screate_null", sid > 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate: null " + err);
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}
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try {
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scalar_sbuf = H5.H5Sencode(sid);
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assertFalse("H5.testH5Sencode", scalar_sbuf==null);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sencode " + err);
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}
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finally {
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if(scalar_sbuf == null) {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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try {
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decoded_sid = H5.H5Sdecode(scalar_sbuf);
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assertTrue("H5.testH5Sdecode", decoded_sid>0);
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result = H5.H5Sextent_equal(sid, decoded_sid);
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assertTrue("H5.testH5Sextent_equal", result);
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/* Verify decoded dataspace */
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lresult = H5.H5Sget_simple_extent_npoints(decoded_sid);
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assertTrue("H5.testH5Sget_simple_extent_npoints", lresult==1);
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iresult = H5.H5Sget_simple_extent_ndims(decoded_sid);
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assertTrue("H5.testH5Sget_simple_extent_ndims", iresult==0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sdecode " + err);
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}
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finally {
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try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {}
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Sselect_none() {
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int read_type = -1;
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try {
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H5.H5Sselect_none(H5sid);
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read_type = H5.H5Sget_select_type(H5sid);
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assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_NONE == read_type);
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H5.H5Sselect_all(H5sid);
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read_type = H5.H5Sget_select_type(H5sid);
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assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_ALL == read_type);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sset_extent_none: " + err);
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}
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}
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@Test
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public void testH5Sget_select_npoints() {
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long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */
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long num_elements = -1;
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try {
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H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
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num_elements = H5.H5Sget_select_npoints(H5sid);
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assertTrue("H5.H5Sget_select_npoints: "+num_elements, 3 == num_elements);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_select_npoints: " + err);
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}
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sget_select_elem_pointlist_invalid() throws Throwable {
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long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */
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long getcoord[] = {-1,-1}; /* Coordinates for get point selection */
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try {
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H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_select_elem_pointlist: " + err);
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}
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H5.H5Sget_select_elem_pointlist(H5sid, 0, 3, getcoord);
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}
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@Test
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public void testH5Sget_select_elem_pointlist() {
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long coord[][] = {{0,1},{2,3},{4,5}}; /* Coordinates for point selection */
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long getcoord[] = {-1,-1,-1,-1,-1,-1}; /* Coordinates for get point selection */
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try {
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H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
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H5.H5Sget_select_elem_pointlist(H5sid, 0, 3, getcoord);
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assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]);
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assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]);
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assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]);
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assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]);
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assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]);
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assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_select_elem_pointlist: " + err);
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}
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}
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@Test
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public void testH5Sget_select_bounds() {
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long lowbounds[] = {-1,-1};
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long hibounds[] = {-1,-1};
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try {
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H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
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assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[0]);
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assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[1]);
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assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]);
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assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Sget_select_bounds: " + err);
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}
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}
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@Test
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public void testH5Soffset_simple() {
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long coord[][] = {{2,2},{2,4},{4,2},{4,4}}; /* Coordinates for point selection */
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long lowbounds[] = {-1,-1};
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long hibounds[] = {-1,-1};
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try {
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H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 4, coord);
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H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
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assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[0]);
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assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[1]);
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assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]);
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assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("H5.H5Sget_select_bounds: " + err);
|
|
}
|
|
try {
|
|
long offset[] = {-1,-1};
|
|
H5.H5Soffset_simple(H5sid, offset);
|
|
H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
|
|
assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[0]);
|
|
assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[1]);
|
|
assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-2) == hibounds[0]);
|
|
assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-2) == hibounds[1]);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("H5.H5Soffset_simple: " + err);
|
|
}
|
|
}
|
|
|
|
@Test
|
|
public void testH5Sget_select_hyper() {
|
|
long space1 = -1;
|
|
long start[] = {0,0};
|
|
long stride[] = {1,1};
|
|
long count[] = {1,1};
|
|
long block[] = {4,4};
|
|
long nblocks; // Number of hyperslab blocks
|
|
long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
|
|
try {
|
|
// Copy "all" selection & space
|
|
space1 = H5.H5Scopy(H5sid);
|
|
assertTrue("H5.H5Scopy", H5sid > 0);
|
|
// 'AND' "all" selection with another hyperslab
|
|
H5.H5Sselect_hyperslab(space1, HDF5Constants.H5S_SELECT_AND, start, stride, count, block);
|
|
|
|
// Verify that there is only one block
|
|
nblocks = H5.H5Sget_select_hyper_nblocks(space1);
|
|
assertTrue("H5Sget_select_hyper_nblocks", nblocks == 1);
|
|
|
|
// Retrieve the block defined
|
|
H5.H5Sget_select_hyper_blocklist(space1, 0, nblocks, blocks);
|
|
|
|
// Verify that the correct block is defined
|
|
assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == blocks[0]);
|
|
assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == blocks[1]);
|
|
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == blocks[2]);
|
|
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == blocks[3]);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("H5.H5Sget_select_bounds: " + err);
|
|
}
|
|
finally {
|
|
try {H5.H5Sclose(space1);} catch (Exception ex) {}
|
|
}
|
|
}
|
|
|
|
@Test
|
|
public void testH5Sget_select_valid() {
|
|
long space1 = -1;
|
|
long start[] = {1,0};
|
|
long stride[] = {1,1};
|
|
long count[] = {2,3};
|
|
long block[] = {1,1};
|
|
long offset[] = {0,0}; // Offset of selection
|
|
|
|
try {
|
|
// Copy "all" selection & space
|
|
space1 = H5.H5Scopy(H5sid);
|
|
assertTrue("H5.H5Scopy", H5sid > 0);
|
|
// 'AND' "all" selection with another hyperslab
|
|
H5.H5Sselect_hyperslab(space1, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
|
|
|
|
// Check a valid offset
|
|
offset[0]=-1;
|
|
offset[1]=0;
|
|
H5.H5Soffset_simple(space1, offset);
|
|
assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1));
|
|
|
|
// Check an invalid offset
|
|
offset[0]=10;
|
|
offset[1]=0;
|
|
H5.H5Soffset_simple(space1, offset);
|
|
assertFalse("H5Sselect_valid", H5.H5Sselect_valid(space1));
|
|
|
|
/* Reset offset */
|
|
offset[0]=0;
|
|
offset[1]=0;
|
|
H5.H5Soffset_simple(space1, offset);
|
|
assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1));
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("testH5Sget_select_valid: " + err);
|
|
}
|
|
finally {
|
|
try {H5.H5Sclose(space1);} catch (Exception ex) {}
|
|
}
|
|
}
|
|
|
|
@Test
|
|
public void testH5Shyper_regular() {
|
|
long start[] = {1,0};
|
|
long stride[] = {1,1};
|
|
long count[] = {2,3};
|
|
long block[] = {1,1};
|
|
long q_start[] = new long[2];
|
|
long q_stride[] = new long[2];
|
|
long q_count[] = new long[2];
|
|
long q_block[] = new long[2];
|
|
boolean is_regular = false;
|
|
|
|
try {
|
|
// Set "regular" hyperslab selection
|
|
H5.H5Sselect_hyperslab(H5sid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
|
|
|
|
// Query if 'hyperslab' selection is regular hyperslab (should be TRUE)
|
|
is_regular = H5.H5Sis_regular_hyperslab(H5sid);
|
|
assertTrue("H5.H5Sis_regular_hyperslab", is_regular);
|
|
|
|
// Retrieve the hyperslab parameters
|
|
H5.H5Sget_regular_hyperslab(H5sid, q_start, q_stride, q_count, q_block);
|
|
|
|
/* Verify the hyperslab parameters */
|
|
for(int u = 0; u < H5rank; u++) {
|
|
assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]);
|
|
assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]);
|
|
assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]);
|
|
assertTrue("H5Sget_regular_hyperslab, block", block[u] == q_block[u]);
|
|
} /* end for */
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("testH5Sget_select_valid: " + err);
|
|
}
|
|
}
|
|
}
|