mirror of
https://github.com/HDFGroup/hdf5.git
synced 2025-01-24 15:25:00 +08:00
427ff7da28
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
534 lines
18 KiB
HTML
534 lines
18 KiB
HTML
<html>
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<head><title>
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HDF5/H5R API Specification
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</title>
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<!-- #BeginLibraryItem "/ed_libs/styles_RM.lbi" -->
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<!--
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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-->
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<link href="ed_styles/RMelect.css" rel="stylesheet" type="text/css">
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<body bgcolor="#FFFFFF">
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<!-- HEADER RIGHT " " -->
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<!-- #BeginLibraryItem "/ed_libs/NavBar_RM.lbi" --><hr>
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<center>
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<table border=0 width=98%>
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<tr><td valign=top align=left>
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<a href="index.html">HDF5 documents and links</a> <br>
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<a href="H5.intro.html">Introduction to HDF5</a> <br>
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<a href="http://hdf.ncsa.uiuc.edu/HDF5/doc/UG/index.html">HDF5 User Guide</a> <br>
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<!--
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<a href="Glossary.html">Glossary</a><br>
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-->
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</td>
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<td valign=top align=right>
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And in this document, the
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<a href="RM_H5Front.html">HDF5 Reference Manual</a>
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<br>
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<a href="RM_H5.html">H5</a>
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<a href="RM_H5A.html">H5A</a>
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<a href="RM_H5D.html">H5D</a>
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<a href="RM_H5E.html">H5E</a>
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<a href="RM_H5F.html">H5F</a>
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<a href="RM_H5G.html">H5G</a>
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<a href="RM_H5I.html">H5I</a>
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<a href="RM_H5P.html">H5P</a>
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<br>
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<a href="RM_H5R.html">H5R</a>
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<a href="RM_H5S.html">H5S</a>
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<a href="RM_H5T.html">H5T</a>
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<a href="RM_H5Z.html">H5Z</a>
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<a href="Tools.html">Tools</a>
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<a href="PredefDTypes.html">Datatypes</a>
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</td></tr>
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</table>
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</center>
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<hr><!-- #EndLibraryItem --><center>
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<h1>H5R: Reference Interface</h1>
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</center>
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<h2>Reference API Functions</h2>
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The Reference interface allows the user to create references
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to specific objects and data regions in an HDF5 file.
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<p>
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<strong>The C Interfaces:</strong>
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<table border=0 width=80%>
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<tr><td valign=top width=40%>
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<ul>
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<li><a href="#Reference-Create">H5Rcreate</a>
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<li><a href="#Reference-Dereference">H5Rdereference</a>
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</ul>
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</td><td valign=top width=40%>
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<ul>
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<li><a href="#Reference-GetRegion">H5Rget_region</a>
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<li><a href="#Reference-GetObjType">H5Rget_obj_type</a>
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</ul>
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</td><td valign=top width=20%>
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<ul>
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</ul>
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</td></tr>
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</table>
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<p>
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<i>Alphabetical Listing</i>
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<table border="0">
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<tr>
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<td valign="top">
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<ul>
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<li><a href="#Reference-Create">H5Rcreate</a>
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<li><a href="#Reference-Dereference">H5Rdereference</a>
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</ul>
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</td>
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<td> </td>
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<td valign="top">
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<ul>
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<li><a href="#Reference-GetObjType">H5Rget_obj_type</a>
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</ul>
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</td>
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<td> </td>
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<td valign="top">
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<ul>
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<li><a href="#Reference-GetRegion">H5Rget_region</a>
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</ul>
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</td>
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</tr>
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</table>
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<br>
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<strong>The FORTRAN90 Interfaces:</strong>
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<br>
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In general, each FORTRAN90 subroutine performs exactly the same task
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as the corresponding C function.
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<br>
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<table border=0 width=80%>
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<tr><td valign=top width=40%>
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<ul>
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<li><a href="#Reference-Create">h5rcreate_f</a>
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<li><a href="#Reference-Dereference">h5rdereference_f</a>
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</ul>
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</td><td valign=top width=40%>
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<ul>
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<li><a href="#Reference-GetRegion">h5rget_region_f</a>
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<li><a href="#Reference-GetObjType">h5rget_object_type_f</a>
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</ul>
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</td><td valign=top width=20%>
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<ul>
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</ul>
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</td></tr>
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</table>
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<p>
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<!-- NEW PAGE -->
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<!-- HEADER RIGHT " " -->
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<!-- NEW PAGE -->
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<!-- HEADER RIGHT "H5Rcreate" -->
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<hr>
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<dl>
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<dt><strong>Name:</strong> <a name="Reference-Create">H5Rcreate</a>
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<dt><strong>Signature:</strong>
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<dd><em>herr_t</em> <code>H5Rcreate</code>(<em>void *</em><code>ref</code>,
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<em>hid_t</em> <code>loc_id</code>,
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<em>const char *</em><code>name</code>,
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<em>H5R_type_t</em> <code>ref_type</code>,
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<em>hid_t</em> <code>space_id</code>
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)
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<dt><strong>Purpose:</strong>
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<dd>Creates a reference.
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<dt><strong>Description:</strong>
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<dd><code>H5Rcreate</code> creates the reference, <code>ref</code>,
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of the type specified in <code>ref_type</code>, pointing to
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the object <code>name</code> located at <code>loc_id</code>.
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<p>
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The HDF5 library maps the <em>void</em> type specified above
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for <code>ref</code> to the type specified in <code>ref_type</code>,
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which will be one of those appearing in the first column of
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the following table.
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The second column of the table lists the HDF5 constant associated
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with each reference type.
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<dir>
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<table border=0>
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<tr><td><em>hdset_reg_ref_t</em> </td>
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<td><code>H5R_DATASET_REGION</code> </td>
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<td>Dataset region reference</td></tr>
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<tr><td><em>hobj_ref_t</em></td>
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<td><code>H5R_OBJECT</code></td>
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<td>Object reference</td></tr>
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</table>
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</dir>
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<p>
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The parameters <code>loc_id</code> and <code>name</code> are
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used to locate the object.
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<p>
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The parameter <code>space_id</code> identifies the region
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to be pointed to for a dataset region reference.
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This parameter is unused with object references.
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<dt><strong>Parameters:</strong>
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<ul><table>
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<tr>
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<td valign="top"><em>void *</em><code>ref</code></td>
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<td valign="top">OUT: Reference created by the function call.</td></tr>
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<tr>
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<td valign="top"><em>hid_t</em> <code>loc_id</code></td>
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<td valign="top">IN: Location identifier used to locate the object being
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pointed to.</td></tr>
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<tr>
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<td valign="top"><em>const char *</em><code>name</code></td>
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<td valign="top">IN: Name of object at location <code>loc_id</code>.</td></tr>
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<tr>
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<td valign="top"><em>H5R_type_t</em> <code>ref_type </code></td>
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<td valign="top">IN: Type of reference.</td></tr>
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<tr>
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<td valign="top"><em>hid_t</em> <code>space_id</code></td>
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<td valign="top">IN: Dataspace identifier with selection.
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Used for dataset region references.</td></tr>
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</table></ul>
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<dt><strong>Returns:</strong>
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<dd>Returns a non-negative value if successful;
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otherwise returns a negative value.
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<dt><strong>Fortran90 Interface:</strong> h5rcreate_f
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<p><strong>To create an object reference</strong>
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<dd>
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<pre>
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SUBROUTINE h5rcreate_f(loc_id, name, ref, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: loc_id ! Location identifier
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CHARACTER(LEN=*), INTENT(IN) :: name ! Name of the object at location
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! specified by loc_id identifier
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TYPE(hobj_ref_t_f), INTENT(OUT) :: ref ! Object reference
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INTEGER, INTENT(OUT) :: hdferr ! Error code
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END SUBROUTINE h5rcreate_f
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</pre></dt>
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<!-- NEW PAGE -->
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<dt><strong>To create a region reference</strong>
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<dd>
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<pre>
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SUBROUTINE h5rcreate_f(loc_id, name, space_id, ref, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: loc_id ! Location identifier
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CHARACTER(LEN=*), INTENT(IN) :: name ! Name of the dataset at location
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! specified by loc_id identifier
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INTEGER(HID_T), INTENT(IN) :: space_id ! Dataset's dataspace identifier
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TYPE(hdset_reg_ref_t_f), INTENT(OUT) :: ref ! Dataset region reference
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INTEGER, INTENT(OUT) :: hdferr ! Error code
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END SUBROUTINE h5rcreate_f
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</pre>
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<!--<dt><strong>Non-C API(s):</strong>
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<dd>
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<img src="Graphics/Java.gif">
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<img src="Graphics/C++.gif">
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-->
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</dl>
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<!-- NEW PAGE -->
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<!-- HEADER RIGHT "H5Rdereference" -->
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<hr>
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<dl>
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<dt><strong>Name:</strong> <a name="Reference-Dereference">H5Rdereference</a>
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<dt><strong>Signature:</strong>
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<dd><em>hid_t</em> <code>H5Rdereference</code>(<em>hid_t</em> <code>dataset</code>,
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<em>H5R_type_t</em> <code>ref_type</code>,
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<em>void *</em><code>ref</code>
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)
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<dt><strong>Purpose:</strong>
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<dd>Opens the HDF5 object referenced.
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<dt><strong>Description:</strong>
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<dd>Given a reference to some object, <code>H5Rdereference</code>
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opens that object and returns an identifier.
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<p>
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The parameter <code>ref_type</code> specifies the reference type
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of <code>ref</code>.
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<code>ref_type</code> may contain either of the following values:
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<ul>
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<li><code>H5R_OBJECT</code> (<code>0</code>)
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<li><code>H5R_DATASET_REGION</code> (<code>1</code>)
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</ul>
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<dt><strong>Parameters:</strong>
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<ul><table>
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<tr>
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<td valign="top"><em>hid_t</em> <code>dataset</code></td>
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<td valign="top">IN: Dataset containing reference object.</td></tr>
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<tr>
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<td valign="top"><em>H5R_type_t</em> <code>ref_type </code></td>
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<td valign="top">IN: The reference type of <code>ref</code>.</td></tr>
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<tr>
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<td valign="top"><em>void *</em><code>ref</code></td>
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<td valign="top">IN: Reference to open.</td></tr>
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</table></ul>
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<dt><strong>Returns:</strong>
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<dd>Returns valid identifier if successful;
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otherwise returns a negative value.
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<dt><strong>Fortran90 Interface:</strong> h5rdereference_f
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<p><strong>To dereference an object</strong>
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<dd>
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<pre>
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SUBROUTINE h5rdereference_f(dset_id, ref, obj_id, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
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TYPE(hobj_ref_t_f), INTENT(IN) :: ref ! Object reference
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INTEGER(HID_T), INTENT(OUT) :: obj_id ! Object identifier
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INTEGER, INTENT(OUT) :: hdferr ! Error code
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END SUBROUTINE h5rdereference_f
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</pre>
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</dt>
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<dt><strong>To dereference a region</strong>
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<dd>
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<pre>
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SUBROUTINE h5rdereference_f(dset_id, ref, obj_id, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
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TYPE(hdset_reg_ref_t_f), INTENT(IN) :: ref ! Object reference
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INTEGER(HID_T), INTENT(OUT) :: obj_id ! Object identifier
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INTEGER, INTENT(OUT) :: hdferr ! Error code
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END SUBROUTINE h5rdereference_f
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</pre>
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<!--<dt><strong>Non-C API(s):</strong>
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<dd>
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<img src="Graphics/Java.gif">
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<img src="Graphics/C++.gif">
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-->
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</dl>
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<!-- NEW PAGE -->
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<!-- HEADER RIGHT "H5Rget_obj_type" -->
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<hr>
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<dl>
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<dt><strong>Name:</strong> <a name="Reference-GetObjType">H5Rget_obj_type</a>
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<dt><strong>Signature:</strong>
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<dd><em>H5G_obj_t</em> <code>H5Rget_obj_type</code>(<em>hid_t</em> <code>id</code>,
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<em>H5R_type_t</em> <code>ref_type</code>,
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<em>void *</em><code>ref</code>
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)
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<dt><strong>Purpose:</strong>
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<dd>Retrieves the type of object that an object reference points to.
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<dt><strong>Description:</strong>
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<dd>Given type of object reference, <code>ref_type</code>,
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and a reference to an object, <code>ref</code>,
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<code>H5Rget_obj_type</code>
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returns the type of the referenced object.
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<p>
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Valid object reference types, to pass in as <code>ref_type</code>,
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include the following:
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<table border="0">
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<tr align=left valign=top><td> </td><td>
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<code>H5R_OBJECT</code></td><td>
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Reference is an object reference.
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</td></tr>
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<tr align=left valign=top><td> </td><td>
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<code>H5R_DATASET_REGION </code></td><td>
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Reference is a dataset region reference.
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</td></tr>
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</table>
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<p>
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Valid object type return values include the following:
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<table border="0">
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<tr align=left valign=top><td> </td><td>
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<code>H5G_LINK</code></td><td>
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Object is a symbolic link.
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</td></tr>
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<tr align=left valign=top><td> </td><td>
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<code>H5G_GROUP</code></td><td>
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Object is a group.
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</td></tr>
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<tr align=left valign=top><td> </td><td>
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<code>H5G_DATASET </code></td><td>
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Object is a dataset.
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</td></tr>
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<tr align=left valign=top><td> </td><td>
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<code>H5G_TYPE</code></td><td>
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Object is a named datatype.
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</td></tr>
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</table>
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<dt><strong>Parameters:</strong>
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<ul><table>
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<tr>
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<td valign="top"><em>hid_t</em> <code>id</code>,</td>
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<td valign="top">IN: The dataset containing the reference object or
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the location identifier of the object that the
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dataset is located within.</td></tr>
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<tr>
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<td valign="top"><em>H5R_type_t</em> <code>ref_type </code></td>
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<td valign="top">IN: Type of reference to query.</td></tr>
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<tr>
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<td valign="top"><em>void *</em><code>ref</code></td>
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<td valign="top">IN: Reference to query.</td></tr>
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</table></ul>
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<dt><strong>Returns:</strong>
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<dd>Returns an object type as defined in <code>H5Gpublic.h</code> if successful;
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otherwise returns <code>H5G_UNKNOWN</code>.
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<dt><strong>Fortran90 Interface:</strong> h5rget_object_type_f
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<dd>
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<pre>
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SUBROUTINE h5rget_object_type_f(dset_id, ref, obj_type, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
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TYPE(hobj_ref_t_f), INTENT(IN) :: ref ! Object reference
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INTEGER, INTENT(OUT) :: obj_type ! Object type
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! H5G_UNKNOWN_F (-1)
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! H5G_LINK_F 0
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! H5G_GROUP_F 1
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! H5G_DATASET_F 2
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! H5G_TYPE_F 3
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INTEGER, INTENT(OUT) :: hdferr ! Error code
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END SUBROUTINE h5rget_object_type_f
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</pre>
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<!--<dt><strong>Non-C API(s):</strong>
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<dd>
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<img src="Graphics/Java.gif">
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<img src="Graphics/C++.gif">
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-->
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</dl>
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<!-- NEW PAGE -->
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<!-- HEADER RIGHT "H5Rget_region" -->
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<hr>
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<dl>
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<dt><strong>Name:</strong> <a name="Reference-GetRegion">H5Rget_region</a>
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<dt><strong>Signature:</strong>
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<dd><em>hid_t</em> <code>H5Rget_region</code>(<em>hid_t</em> <code>dataset</code>,
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|
<em>H5R_type_t</em> <code>ref_type</code>,
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|
<em>void *</em><code>ref</code>
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|
)
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<dt><strong>Purpose:</strong>
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|
<dd>Retrieves a dataspace with the specified region selected.
|
|
<dt><strong>Description:</strong>
|
|
<dd>Given a reference to an object <code>ref</code>,
|
|
<code>H5Rget_region</code> creates a copy of the dataspace
|
|
of the dataset pointed to and defines a selection in the copy
|
|
which is the region pointed to.
|
|
<p>
|
|
The parameter <code>ref_type</code> specifies the reference type
|
|
of <code>ref</code>.
|
|
<code>ref_type</code> may contain the following value:
|
|
<ul>
|
|
<li><code>H5R_DATASET_REGION</code> (<code>1</code>)
|
|
</ul>
|
|
<dt><strong>Parameters:</strong>
|
|
<ul><table>
|
|
<tr>
|
|
<td valign="top"><em>hid_t</em> <code>dataset</code></td>
|
|
<td valign="top">IN: Dataset containing reference object.</td></tr>
|
|
<tr>
|
|
<td valign="top"><em>H5R_type_t</em> <code>ref_type </code></td>
|
|
<td valign="top">IN: The reference type of <code>ref</code>.</td></tr>
|
|
<tr>
|
|
<td valign="top"><em>void *</em><code>ref</code></td>
|
|
<td valign="top">IN: Reference to open.</td></tr>
|
|
</table></ul>
|
|
<dt><strong>Returns:</strong>
|
|
<dd>Returns a valid identifier if successful;
|
|
otherwise returns a negative value.
|
|
<dt><strong>Fortran90 Interface:</strong> h5rget_region_f
|
|
<dd>
|
|
<pre>
|
|
SUBROUTINE h5rget_region_f(dset_id, ref, space_id, hdferr)
|
|
IMPLICIT NONE
|
|
INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
|
|
TYPE(hdset_reg_ref_t_f), INTENT(IN) :: ref ! Dataset region reference
|
|
INTEGER(HID_T), INTENT(OUT) :: space_id ! Space identifier
|
|
INTEGER, INTENT(OUT) :: hdferr ! Error code
|
|
|
|
END SUBROUTINE h5rget_region_f
|
|
</pre>
|
|
|
|
<!--<dt><strong>Non-C API(s):</strong>
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<a href="H5.intro.html">Introduction to HDF5</a> <br>
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<a href="mailto:hdfhelp@ncsa.uiuc.edu">HDF Help Desk</a>
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