mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-27 08:01:04 +08:00
aa4fc58ac9
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial only, autotools and CMake (3.3.2)
245 lines
7.5 KiB
C
245 lines
7.5 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*
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* Small program to illustrate the "misalignment" of members within a compound
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* datatype, in a datatype fixed by H5Tget_native_type().
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*/
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#include <string.h>
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#include <stdlib.h>
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/*#include <unistd.h> *//* Required for unlink() */
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#include "hdf5.h"
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#include "H5private.h"
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#include "h5tools.h"
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const char *fname = "talign.h5";
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const char *setname = "align";
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/*
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* This program assumes that there is no extra space between the members 'Ok'
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* and 'Not Ok', (there shouldn't be because they are of the same atomic type
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* H5T_NATIVE_FLOAT, and they are placed within the compound next to one
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* another per construction)
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*/
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int main(void)
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{
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hid_t fil=-1, spc=-1, set=-1;
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hid_t cs6=-1, cmp=-1, fix=-1;
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hid_t cmp1=-1, cmp2=-1, cmp3=-1;
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hid_t plist=-1;
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hid_t array_dt=-1;
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hsize_t dim[2];
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hsize_t cdim[4];
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char string5[5];
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float fok[2] = {1234.0f, 2341.0f};
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float fnok[2] = {5678.0f, 6785.0f};
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float *fptr = NULL;
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char *data = NULL;
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int result = 0;
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herr_t error = 1;
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printf("%-70s", "Testing alignment in compound datatypes");
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strcpy(string5, "Hi!");
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HDunlink(fname);
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fil = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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if (fil < 0) {
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puts("*FAILED*");
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return 1;
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}
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H5E_BEGIN_TRY {
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(void)H5Ldelete(fil, setname, H5P_DEFAULT);
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} H5E_END_TRY;
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cs6 = H5Tcopy(H5T_C_S1);
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H5Tset_size(cs6, sizeof(string5));
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H5Tset_strpad(cs6, H5T_STR_NULLPAD);
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cmp = H5Tcreate(H5T_COMPOUND, sizeof(fok) + sizeof(string5) + sizeof(fnok));
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H5Tinsert(cmp, "Awkward length", 0, cs6);
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cdim[0] = sizeof(fok) / sizeof(float);
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array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim);
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H5Tinsert(cmp, "Ok", sizeof(string5), array_dt);
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H5Tclose(array_dt);
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cdim[0] = sizeof(fnok) / sizeof(float);
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array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim);
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H5Tinsert(cmp, "Not Ok", sizeof(fok) + sizeof(string5), array_dt);
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H5Tclose(array_dt);
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fix = h5tools_get_native_type(cmp);
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cmp1 = H5Tcreate(H5T_COMPOUND, sizeof(fok));
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cdim[0] = sizeof(fok) / sizeof(float);
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array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim);
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H5Tinsert(cmp1, "Ok", 0, array_dt);
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H5Tclose(array_dt);
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cmp2 = H5Tcreate(H5T_COMPOUND, sizeof(string5));
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H5Tinsert(cmp2, "Awkward length", 0, cs6);
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cmp3 = H5Tcreate(H5T_COMPOUND, sizeof(fnok));
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cdim[0] = sizeof(fnok) / sizeof(float);
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array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim);
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H5Tinsert(cmp3, "Not Ok", 0, array_dt);
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H5Tclose(array_dt);
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plist = H5Pcreate(H5P_DATASET_XFER);
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if((error = H5Pset_preserve(plist, 1)) < 0)
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goto out;
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/*
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* Create a small dataset, and write data into it we write each field
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* in turn so that we are avoid alignment issues at this point
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*/
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dim[0] = 1;
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spc = H5Screate_simple(1, dim, NULL);
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set = H5Dcreate2(fil, setname, cmp, spc, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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H5Dwrite(set, cmp1, spc, H5S_ALL, plist, fok);
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H5Dwrite(set, cmp2, spc, H5S_ALL, plist, string5);
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H5Dwrite(set, cmp3, spc, H5S_ALL, plist, fnok);
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H5Dclose(set);
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/* Now open the set, and read it back in */
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data = (char *)HDmalloc(H5Tget_size(fix));
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if(!data) {
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perror("malloc() failed");
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abort();
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}
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set = H5Dopen2(fil, setname, H5P_DEFAULT);
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H5Dread(set, fix, spc, H5S_ALL, H5P_DEFAULT, data);
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fptr = (float *)(data + H5Tget_member_offset(fix, 1));
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H5Dclose(set);
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out:
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if(error < 0) {
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result = 1;
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puts("*FAILED - HDF5 library error*");
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} else if(!(H5_FLT_ABS_EQUAL(fok[0], fptr[0]))
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|| !(H5_FLT_ABS_EQUAL(fok[1], fptr[1]))
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|| !(H5_FLT_ABS_EQUAL(fnok[0], fptr[2]))
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|| !(H5_FLT_ABS_EQUAL(fnok[1], fptr[3]))) {
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char *mname;
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result = 1;
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mname = H5Tget_member_name(fix, 0);
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printf("%14s (%2d) %6s = %s\n",
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mname ? mname : "(null)", (int)H5Tget_member_offset(fix,0),
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string5, (char *)(data + H5Tget_member_offset(fix, 0)));
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if(mname)
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H5free_memory(mname);
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fptr = (float *)(data + H5Tget_member_offset(fix, 1));
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mname = H5Tget_member_name(fix, 1);
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printf("Data comparison:\n"
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"%14s (%2d) %6f = %f\n"
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" %6f = %f\n",
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mname ? mname : "(null)", (int)H5Tget_member_offset(fix,1),
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(double)fok[0], (double)fptr[0],
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(double)fok[1], (double)fptr[1]);
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if(mname)
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H5free_memory(mname);
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fptr = (float *)(data + H5Tget_member_offset(fix, 2));
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mname = H5Tget_member_name(fix, 2);
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printf("%14s (%2d) %6f = %f\n"
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" %6f = %6f\n",
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mname ? mname : "(null)", (int)H5Tget_member_offset(fix,2),
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(double)fnok[0], (double)fptr[0],
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(double)fnok[1], (double)fptr[1]);
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if(mname)
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H5free_memory(mname);
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fptr = (float *)(data + H5Tget_member_offset(fix, 1));
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printf("\n"
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"Short circuit\n"
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" %6f = %f\n"
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" %6f = %f\n"
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" %6f = %f\n"
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" %6f = %f\n",
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(double)fok[0], (double)fptr[0],
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(double)fok[1], (double)fptr[1],
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(double)fnok[0], (double)fptr[2],
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(double)fnok[1], (double)fptr[3]);
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puts("*FAILED - compound type alignmnent problem*");
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} else {
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puts(" PASSED");
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}
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if(data)
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HDfree(data);
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H5Sclose(spc);
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H5Tclose(cs6);
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H5Tclose(cmp);
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H5Tclose(fix);
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H5Tclose(cmp1);
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H5Tclose(cmp2);
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H5Tclose(cmp3);
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H5Pclose(plist);
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H5Fclose(fil);
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HDunlink(fname);
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fflush(stdout);
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return result;
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}
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/*-------------------------------------------------------------------------
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* Function: h5tools_get_native_type
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*
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* Purpose: Wrapper around H5Tget_native_type() to work around
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* Problems with bitfields.
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*
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* Return: Success: datatype ID
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*
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* Failure: FAIL
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*
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* Programmer: Quincey Koziol
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* Tuesday, October 5, 2004
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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hid_t
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h5tools_get_native_type(hid_t type)
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{
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hid_t p_type;
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H5T_class_t type_class;
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type_class = H5Tget_class(type);
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if(type_class==H5T_BITFIELD)
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p_type=H5Tcopy(type);
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else
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p_type = H5Tget_native_type(type,H5T_DIR_DEFAULT);
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return(p_type);
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}
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