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https://github.com/HDFGroup/hdf5.git
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fab95ce7b3
* OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup
195 lines
7.2 KiB
C
195 lines
7.2 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*
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* Programmer: Bill Wendling
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* Tuesday, 6. March 2001
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*
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* Purpose: Support functions for the various tools.
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*/
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#ifndef H5TOOLS_UTILS_H
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#define H5TOOLS_UTILS_H
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#include "hdf5.h"
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#ifdef __cplusplus
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extern "C" {
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#endif
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/* ``parallel_print'' information */
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#define PRINT_DATA_MAX_SIZE 512
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#define OUTBUFF_SIZE (PRINT_DATA_MAX_SIZE * 4)
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H5TOOLS_DLLVAR int g_nTasks;
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H5TOOLS_DLLVAR unsigned char g_Parallel;
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H5TOOLS_DLLVAR char outBuff[];
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H5TOOLS_DLLVAR unsigned outBuffOffset;
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H5TOOLS_DLLVAR FILE *overflow_file;
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/* Maximum size used in a call to malloc for a dataset */
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H5TOOLS_DLLVAR hsize_t H5TOOLS_MALLOCSIZE;
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/* size of hyperslab buffer when a dataset is bigger than H5TOOLS_MALLOCSIZE */
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H5TOOLS_DLLVAR hsize_t H5TOOLS_BUFSIZE;
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/*
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* begin get_option section
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*/
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H5TOOLS_DLLVAR int opt_err; /* getoption prints errors if this is on */
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H5TOOLS_DLLVAR int opt_ind; /* token pointer */
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H5TOOLS_DLLVAR const char *opt_arg; /* flag argument (or value) */
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enum {
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no_arg = 0, /* doesn't take an argument */
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require_arg, /* requires an argument */
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optional_arg /* argument is optional */
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};
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/*
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* get_option determines which options are specified on the command line and
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* returns a pointer to any arguments possibly associated with the option in
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* the ``opt_arg'' variable. get_option returns the shortname equivalent of
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* the option. The long options are specified in the following way:
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*
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* struct long_options foo[] = {
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* { "filename", require_arg, 'f' },
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* { "append", no_arg, 'a' },
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* { "width", require_arg, 'w' },
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* { NULL, 0, 0 }
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* };
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*
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* Long named options can have arguments specified as either:
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*
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* ``--param=arg'' or ``--param arg''
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*
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* Short named options can have arguments specified as either:
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*
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* ``-w80'' or ``-w 80''
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*
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* and can have more than one short named option specified at one time:
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*
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* -aw80
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*
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* in which case those options which expect an argument need to come at the
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* end.
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*/
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typedef struct long_options {
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const char *name; /* name of the long option */
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int has_arg; /* whether we should look for an arg */
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char shortval; /* the shortname equivalent of long arg
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* this gets returned from get_option */
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} long_options;
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H5TOOLS_DLL int get_option(int argc, const char **argv, const char *opt, const struct long_options *l_opt);
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/*
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* end get_option section
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*/
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/*struct taken from the dumper. needed in table struct*/
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typedef struct obj_t {
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H5O_token_t obj_token;
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char * objname;
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hbool_t displayed; /* Flag to indicate that the object has been displayed */
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hbool_t recorded; /* Flag for named datatypes to indicate they were found in the group hierarchy */
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} obj_t;
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/*struct for the tables that the find_objs function uses*/
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typedef struct table_t {
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hid_t fid;
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size_t size;
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size_t nobjs;
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obj_t *objs;
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} table_t;
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/*this struct stores the information that is passed to the find_objs function*/
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typedef struct find_objs_t {
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hid_t fid;
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table_t *group_table;
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table_t *type_table;
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table_t *dset_table;
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} find_objs_t;
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H5TOOLS_DLLVAR unsigned h5tools_nCols; /*max number of columns for outputting */
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/* Definitions of useful routines */
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H5TOOLS_DLL void indentation(unsigned);
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H5TOOLS_DLL void print_version(const char *progname);
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H5TOOLS_DLL void parallel_print(const char *format, ...);
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H5TOOLS_DLL herr_t parse_tuple(const char *start, int sep, char **cpy_out, unsigned *nelems,
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char ***ptrs_out);
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H5TOOLS_DLL void error_msg(const char *fmt, ...);
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H5TOOLS_DLL void warn_msg(const char *fmt, ...);
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H5TOOLS_DLL void help_ref_msg(FILE *output);
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H5TOOLS_DLL void free_table(table_t *table);
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#ifdef H5DUMP_DEBUG
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H5TOOLS_DLL void dump_tables(find_objs_t *info);
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#endif /* H5DUMP_DEBUG */
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H5TOOLS_DLL herr_t init_objs(hid_t fid, find_objs_t *info, table_t **group_table, table_t **dset_table,
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table_t **type_table);
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H5TOOLS_DLL obj_t *search_obj(table_t *temp, const H5O_token_t *obj_token);
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#ifndef H5_HAVE_TMPFILE
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H5TOOLS_DLL FILE *tmpfile(void);
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#endif
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/*************************************************************
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*
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* candidate functions to be public
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*
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*************************************************************/
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/* This code is layout for common code among tools */
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typedef enum toolname_t {
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TOOL_H5DIFF,
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TOOL_H5LS,
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TOOL__H5DUMP /* add as necessary */
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} h5tool_toolname_t;
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/* this struct can be used to differntiate among tools */
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typedef struct {
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h5tool_toolname_t toolname;
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int msg_mode;
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} h5tool_opt_t;
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/* obtain link info from H5tools_get_symlink_info() */
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typedef struct {
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H5O_type_t trg_type; /* OUT: target type */
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char * trg_path; /* OUT: target obj path. This must be freed
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* when used with H5tools_get_symlink_info() */
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H5O_token_t obj_token; /* OUT: target object token */
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unsigned long fileno; /* OUT: File number that target object is located in */
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H5L_info2_t linfo; /* OUT: link info */
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h5tool_opt_t opt; /* IN: options */
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} h5tool_link_info_t;
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/* Definitions of routines */
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H5TOOLS_DLL int H5tools_get_symlink_info(hid_t file_id, const char *linkpath, h5tool_link_info_t *link_info,
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hbool_t get_obj_type);
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H5TOOLS_DLL const char *h5tools_getprogname(void);
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H5TOOLS_DLL void h5tools_setprogname(const char *progname);
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H5TOOLS_DLL int h5tools_getstatus(void);
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H5TOOLS_DLL void h5tools_setstatus(int d_status);
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H5TOOLS_DLL int h5tools_getenv_update_hyperslab_bufsize(void);
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#ifdef H5_HAVE_ROS3_VFD
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H5TOOLS_DLL herr_t h5tools_parse_ros3_fapl_tuple(const char *tuple_str, int delim,
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H5FD_ros3_fapl_t *fapl_config_out);
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H5TOOLS_DLL int h5tools_populate_ros3_fapl(H5FD_ros3_fapl_t *fa, const char **values);
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#endif /* H5_HAVE_ROS3_VFD */
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#ifdef H5_HAVE_LIBHDFS
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H5TOOLS_DLL herr_t h5tools_parse_hdfs_fapl_tuple(const char *tuple_str, int delim,
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H5FD_hdfs_fapl_t *fapl_config_out);
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#endif
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#ifdef __cplusplus
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}
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#endif
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#endif /* H5TOOLS_UTILS_H */
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