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hdf5/tools/test/h5ls/testh5ls.sh.in
Larry Knox 11dfa25910
Update copyright headers (#2184) 
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00

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#! /bin/sh
#
# Copyright by The HDF Group.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://www.hdfgroup.org/licenses.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Tests for the h5ls tool
srcdir=@srcdir@
USE_FILTER_SZIP="@USE_FILTER_SZIP@"
USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
TESTNAME=h5ls
EXIT_SUCCESS=0
EXIT_FAILURE=1
H5LS=../../src/h5ls/h5ls # The tool name
H5LS_BIN=`pwd`/$H5LS # The path of the tool binary
RM='rm -rf'
CMP='cmp -s'
DIFF='diff -c'
CP='cp'
NLINES=20 # Max. lines of output to display if test fails
DIRNAME='dirname'
LS='ls'
AWK='awk'
WORDS_BIGENDIAN="@WORDS_BIGENDIAN@"
nerrors=0
verbose=yes
h5haveexitcode=yes # default is yes
# source dirs
SRC_TOOLS="$srcdir/../.."
SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
# testfiles source dirs for tools
SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
SRC_H5DIFF_TESTFILES="$SRC_TOOLS/test/h5diff/testfiles"
SRC_H5COPY_TESTFILES="$SRC_TOOLS/test/h5copy/testfiles"
SRC_H5REPACK_TESTFILES="$SRC_TOOLS/test/h5repack/testfiles"
SRC_H5JAM_TESTFILES="$SRC_TOOLS/test/h5jam/testfiles"
SRC_H5STAT_TESTFILES="$SRC_TOOLS/test/h5stat/testfiles"
SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/test/h5import/testfiles"
SRC_H5LS_ERRFILES="$SRC_TOOLS/test/h5ls/errfiles"
TESTDIR=./testfiles
test -d $TESTDIR || mkdir $TESTDIR
######################################################################
# test files
# --------------------------------------------------------------------
# All the test files copy from source directory to test directory
# NOTE: Keep this framework to add/remove test files.
# Any test files from other tools can be used in this framework.
# This list are also used for checking exist.
# Comment '#' without space can be used.
# --------------------------------------------------------------------
LIST_HDF5_TEST_FILES="
$SRC_H5LS_TESTFILES/tall.h5
$SRC_H5LS_TESTFILES/tarray1.h5
$SRC_H5LS_TESTFILES/tattr2.h5
$SRC_H5LS_TESTFILES/tattrreg.h5
$SRC_H5LS_TESTFILES/tcompound.h5
$SRC_H5LS_TESTFILES/tdatareg.h5
$SRC_H5LS_TESTFILES/tdset.h5
$SRC_H5LS_TESTFILES/tempty.h5
$SRC_H5LS_TESTFILES/textlink.h5
$SRC_H5LS_TESTFILES/textlinksrc.h5
$SRC_H5LS_TESTFILES/textlinktar.h5
$SRC_H5LS_TESTFILES/tgroup.h5
$SRC_H5LS_TESTFILES/tgrp_comments.h5
$SRC_H5LS_TESTFILES/tgrpnullspace.h5
$SRC_H5LS_TESTFILES/thlink.h5
$SRC_H5LS_TESTFILES/tloop.h5
$SRC_H5LS_TESTFILES/tnestedcomp.h5
$SRC_H5LS_TESTFILES/tsaf.h5
$SRC_H5LS_TESTFILES/tslink.h5
$SRC_H5LS_TESTFILES/tsoftlinks.h5
$SRC_H5LS_TESTFILES/tstr.h5
$SRC_H5LS_TESTFILES/tudlink.h5
$SRC_H5LS_TESTFILES/tvldtypes1.h5
$SRC_H5LS_TESTFILES/tdset_idx.h5
"
LIST_ERROR_TEST_FILES="
$SRC_H5LS_ERRFILES/nosuchfile.err
$SRC_H5LS_ERRFILES/textlinksrc-nodangle-1.err
$SRC_H5LS_ERRFILES/tgroup-1.err
"
LIST_OTHER_TEST_FILES="
$SRC_H5LS_TESTFILES/help-1.ls
$SRC_H5LS_TESTFILES/help-2.ls
$SRC_H5LS_TESTFILES/help-3.ls
$SRC_H5LS_TESTFILES/nosuchfile.ls
$SRC_H5LS_TESTFILES/tall-1.ls
$SRC_H5LS_TESTFILES/tall-2.ls
$SRC_H5LS_TESTFILES/tarray1.ls
$SRC_H5LS_TESTFILES/tattr2.ls
$SRC_H5LS_TESTFILES/tattrreg_le.ls
$SRC_H5LS_TESTFILES/tattrreg_be.ls
$SRC_H5LS_TESTFILES/tcomp-1.ls
$SRC_H5LS_TESTFILES/tdataregbe.ls
$SRC_H5LS_TESTFILES/tdataregle.ls
$SRC_H5LS_TESTFILES/tdset-1.ls
$SRC_H5LS_TESTFILES/tempty.ls
$SRC_H5LS_TESTFILES/textlink-1.ls
$SRC_H5LS_TESTFILES/textlinksrc-1.ls
$SRC_H5LS_TESTFILES/textlinksrc-2.ls
$SRC_H5LS_TESTFILES/textlinksrc-3.ls
$SRC_H5LS_TESTFILES/textlinksrc-4.ls
$SRC_H5LS_TESTFILES/textlinksrc-5.ls
$SRC_H5LS_TESTFILES/textlinksrc-6.ls
$SRC_H5LS_TESTFILES/textlinksrc-7.ls
$SRC_H5LS_TESTFILES/textlinksrc-1-old.ls
$SRC_H5LS_TESTFILES/textlinksrc-2-old.ls
$SRC_H5LS_TESTFILES/textlinksrc-3-old.ls
$SRC_H5LS_TESTFILES/textlinksrc-6-old.ls
$SRC_H5LS_TESTFILES/textlinksrc-7-old.ls
$SRC_H5LS_TESTFILES/tsoftlinks-1.ls
$SRC_H5LS_TESTFILES/tsoftlinks-2.ls
$SRC_H5LS_TESTFILES/tsoftlinks-3.ls
$SRC_H5LS_TESTFILES/tsoftlinks-4.ls
$SRC_H5LS_TESTFILES/tsoftlinks-5.ls
$SRC_H5LS_TESTFILES/textlinksrc-nodangle-1.ls
$SRC_H5LS_TESTFILES/textlinksrc-nodangle-2.ls
$SRC_H5LS_TESTFILES/tgrp_comments.ls
$SRC_H5LS_TESTFILES/tsoftlinks-nodangle-1.ls
$SRC_H5LS_TESTFILES/thlinks-nodangle-1.ls
$SRC_H5LS_TESTFILES/tgroup.ls
$SRC_H5LS_TESTFILES/tgroup-1.ls
$SRC_H5LS_TESTFILES/tgroup-2.ls
$SRC_H5LS_TESTFILES/tgroup-3.ls
$SRC_H5LS_TESTFILES/tgrpnullspace.ls
$SRC_H5LS_TESTFILES/thlink-1.ls
$SRC_H5LS_TESTFILES/tloop-1.ls
$SRC_H5LS_TESTFILES/tmultifile.ls
$SRC_H5LS_TESTFILES/tnestcomp-1.ls
$SRC_H5LS_TESTFILES/tnestcomp-2.ls
$SRC_H5LS_TESTFILES/tnestcomp-3.ls
$SRC_H5LS_TESTFILES/tnestcomp-4.ls
$SRC_H5LS_TESTFILES/tsaf.ls
$SRC_H5LS_TESTFILES/tslink-1.ls
$SRC_H5LS_TESTFILES/tstr-1.ls
$SRC_H5LS_TESTFILES/tudlink-1.ls
$SRC_H5LS_TESTFILES/tvldtypes1.ls
$SRC_H5LS_TESTFILES/tvldtypes2le.ls
$SRC_H5LS_TESTFILES/tvldtypes2be.ls
$SRC_H5LS_TESTFILES/tdset_idx.ls
"
# RUNSERIAL is used. Check if it can return exit code from executalbe correctly.
if [ -n "$RUNSERIAL_NOEXITCODE" ]; then
echo "***Warning*** Serial Exit Code is not passed back to shell correctly."
echo "***Warning*** Exit code checking is skipped."
h5haveexitcode=no
fi
#
# copy test files and expected output files from source dirs to test dir
#
COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
COPY_TESTFILES_TO_TESTDIR()
{
# copy test files. Used -f to make sure get a new copy
for tstfile in $COPY_TESTFILES
do
# ignore '#' comment
echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
RET=$?
if [ $RET -eq 1 ]; then
# skip cp if srcdir is same as destdir
# this occurs when build/test performed in source dir and
# make cp fail
SDIR=`$DIRNAME $tstfile`
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
$CP -f $tstfile $TESTDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
fi
fi
done
}
CLEAN_TESTFILES_AND_TESTDIR()
{
# skip rm if srcdir is same as destdir
# this occurs when build/test performed in source dir and
# make cp fail
SDIR=$SRC_H5LS_TESTFILES
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
$RM $TESTDIR
fi
}
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
TESTING() {
SPACES=" "
echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
}
# Source in the output filter function definitions.
. $srcdir/../../../bin/output_filter.sh
# Run a test and print PASS or *FAIL*. For now, if h5ls can complete
# with exit status 0, consider it pass. If a test fails then increment
# the `nerrors' global variable and (if $verbose is set) display up to $NLINS
# lines of the actual output from the tool test. The actual output is not
# removed if $HDF5_NOCLEANUP has a non-zero value.
# Arguments:
# $1 -- actual output filename to use
# $2 and on -- argument for the h5ls tool
TOOLTEST() {
expect="$TESTDIR/$1"
expect_err="$TESTDIR/`basename $1 .ls`.err"
actual="$TESTDIR/`basename $1 .ls`.out"
actual_err="$TESTDIR/`basename $1 .ls`.out.err"
actual_sav=${actual}-sav
actual_err_sav=${actual_err}-sav
shift
retvalexpect=$1
shift
# Run test.
# Stderr is included in stdout so that the diff can detect
# any unexpected output from that stream too.
TESTING $H5LS $@
(
cd $TESTDIR
$RUNSERIAL $H5LS_BIN "$@"
) >$actual 2>$actual_err
exitcode=$?
# save actual and actual_err in case they are needed later.
cp $actual $actual_sav
STDOUT_FILTER $actual
cp $actual_err $actual_err_sav
STDERR_FILTER $actual_err
if [ $h5haveexitcode = 'yes' -a $exitcode -ne $retvalexpect ]; then
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
if [ yes = "$verbose" ]; then
echo "test returned with exit code $exitcode"
echo "test output: (up to $NLINES lines)"
head -$NLINES $actual
echo "***end of test output***"
echo ""
fi
elif [ ! -f $expect ]; then
# Create the expect file if it doesn't yet exist.
echo " CREATED"
cp $actual $expect
echo " Expected result (*.ls) missing"
nerrors="`expr $nerrors + 1`"
elif $CMP $expect $actual; then
echo " PASSED"
else
echo "*FAILED*"
echo " Expected result differs from actual result"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actual_err $actual_sav $actual_err_sav
fi
}
##############################################################################
##############################################################################
### T H E T E S T S ###
##############################################################################
##############################################################################
# prepare for test
COPY_TESTFILES_TO_TESTDIR
# Toss in a bunch of tests. Not sure if they are the right kinds.
# test the help syntax
TOOLTEST help-1.ls 0 -w80 -h
TOOLTEST help-2.ls 0 -w80 -help
TOOLTEST help-3.ls 0 -w80 -?
# test simple command
TOOLTEST tall-1.ls 0 -w80 tall.h5
TOOLTEST tall-2.ls 0 -w80 -r -d tall.h5
TOOLTEST tgroup.ls 0 -w80 tgroup.h5
TOOLTEST tgroup-3.ls 0 -w80 tgroup.h5/g1
# test for displaying groups
# The following combination of arguments is expected to return an error message
# and return value 1
TOOLTEST tgroup-1.ls 1 -w80 -r -g tgroup.h5
TOOLTEST tgroup-2.ls 0 -w80 -g tgroup.h5/g1
# test for files with groups that have long comments
TOOLTEST tgrp_comments.ls 0 -w80 -v -g tgrp_comments.h5/glongcomment
# test for displaying simple space datasets
TOOLTEST tdset-1.ls 0 -w80 -r -d tdset.h5
# test for displaying soft links
TOOLTEST tslink-1.ls 0 -w80 -r tslink.h5
# test for displaying more soft links with --follow-symlinks
TOOLTEST tsoftlinks-1.ls 0 --follow-symlinks tsoftlinks.h5
TOOLTEST tsoftlinks-2.ls 0 --follow-symlinks -r tsoftlinks.h5
TOOLTEST tsoftlinks-3.ls 0 --follow-symlinks tsoftlinks.h5/group1
TOOLTEST tsoftlinks-4.ls 0 --follow-symlinks -r tsoftlinks.h5/group1
TOOLTEST tsoftlinks-5.ls 0 --follow-symlinks tsoftlinks.h5/soft_dset1
# test for displaying external and user-defined links with --follow-symlinks
TOOLTEST textlink-1.ls 0 -w80 -r textlink.h5
TOOLTEST textlinksrc-1.ls 0 -w80 --follow-symlinks -r textlinksrc.h5
TOOLTEST textlinksrc-2.ls 0 -w80 --follow-symlinks -rv textlinksrc.h5/ext_link5
TOOLTEST textlinksrc-3.ls 0 -w80 --follow-symlinks -r textlinksrc.h5/ext_link1
TOOLTEST textlinksrc-4.ls 0 -w80 -r textlinksrc.h5
TOOLTEST textlinksrc-5.ls 0 -w80 -r textlinksrc.h5/ext_link1
TOOLTEST textlinksrc-6.ls 0 -w80 --follow-symlinks textlinksrc.h5
TOOLTEST textlinksrc-7.ls 0 -w80 --follow-symlinks textlinksrc.h5/ext_link1
TOOLTEST tudlink-1.ls 0 -w80 -r tudlink.h5
# test for displaying external links with -E
# the option -E will be depriciated but keep it for backward compatibility
TOOLTEST textlinksrc-1-old.ls 0 -w80 -Er textlinksrc.h5
TOOLTEST textlinksrc-2-old.ls 0 -w80 -Erv textlinksrc.h5/ext_link5
TOOLTEST textlinksrc-3-old.ls 0 -w80 -Er textlinksrc.h5/ext_link1
TOOLTEST textlinksrc-6-old.ls 0 -w80 -E textlinksrc.h5
TOOLTEST textlinksrc-7-old.ls 0 -w80 -E textlinksrc.h5/ext_link1
# tests for no-dangling-links
# if this option is given on dangling link, h5ls should return exit code 1
# when used alone , expect to print out help and return exit code 1
TOOLTEST textlinksrc-nodangle-1.ls 1 -w80 --no-dangling-links textlinksrc.h5
# external dangling link - expected exit code 1
TOOLTEST textlinksrc-nodangle-2.ls 1 -w80 --follow-symlinks --no-dangling-links textlinksrc.h5
# soft dangling link - expected exit code 1
TOOLTEST tsoftlinks-nodangle-1.ls 1 -w80 --follow-symlinks --no-dangling-links tsoftlinks.h5
# when used file with no dangling links - expected exit code 0
TOOLTEST thlinks-nodangle-1.ls 0 -w80 --follow-symlinks --no-dangling-links thlink.h5
# test for wildcards in filename (does not work with cmake)
# this h5ls test script does not pass the filename properly like the h5dump test script???
#TOOLTEST tstarfile.ls 0 -w80 t*link.h5
#TOOLTEST tqmarkfile.ls 0 -w80 t?link.h5
TOOLTEST tmultifile.ls 0 -w80 thlink.h5 tslink.h5
# tests for hard links
TOOLTEST thlink-1.ls 0 -w80 thlink.h5
# tests for compound data types
TOOLTEST tcomp-1.ls 0 -w80 -r -d tcompound.h5
#test for the nested compound type
TOOLTEST tnestcomp-1.ls 0 -w80 -r -d tnestedcomp.h5
TOOLTEST tnestcomp-2.ls 0 -w80 -r -d -S tnestedcomp.h5
TOOLTEST tnestcomp-3.ls 0 -w80 -r -d -l tnestedcomp.h5
TOOLTEST tnestcomp-4.ls 0 -w80 -r -d -l -S tnestedcomp.h5
# test for loop detection
TOOLTEST tloop-1.ls 0 -w80 -r -d tloop.h5
# test for string
TOOLTEST tstr-1.ls 0 -w80 -r -d tstr.h5
# test test file created from lib SAF team
TOOLTEST tsaf.ls 0 -w80 -r -d tsaf.h5
# test for variable length data types
TOOLTEST tvldtypes1.ls 0 -w80 -r -d tvldtypes1.h5
# test for array data types
TOOLTEST tarray1.ls 0 -w80 -r -d tarray1.h5
# test for empty data
TOOLTEST tempty.ls 0 -w80 -d tempty.h5
# test for displaying dataset and attribute of null space
TOOLTEST tgrpnullspace.ls 0 -w80 -v -S tgrpnullspace.h5
# test for all dataset types written to attributes
# enable -S for avoiding printing NATIVE types
TOOLTEST tattr2.ls 0 -w80 -v -S tattr2.h5
# test for attribute with region references without verbose mode
# ( HDFFV-7838, )
if test $WORDS_BIGENDIAN != "yes"; then
TOOLTEST tattrreg_le.ls 0 -w80 -v -d tattrreg.h5
else
TOOLTEST tattrreg_be.ls 0 -w80 -v -d tattrreg.h5
fi
# tests for error handling.
# test for non-existing file
TOOLTEST nosuchfile.ls 1 nosuchfile.h5
# test for variable length data types in verbose mode
if test $WORDS_BIGENDIAN != "yes"; then
TOOLTEST tvldtypes2le.ls 0 -v tvldtypes1.h5
else
TOOLTEST tvldtypes2be.ls 0 -v tvldtypes1.h5
fi
# test for dataset region references data types in verbose mode
if test $WORDS_BIGENDIAN != "yes"; then
TOOLTEST tdataregle.ls 0 -v tdatareg.h5
else
TOOLTEST tdataregbe.ls 0 -v tdatareg.h5
fi
# test for file with datasets that use Fixed Array chunk indices
if test $USE_FILTER_DEFLATE = "yes" ; then
# data read internal filters
TOOLTEST tdset_idx.ls 0 -w80 -d tdset_idx.h5
else
echo "***skip testing tdset_idx.h5"
fi
# Clean up temporary files/directories
CLEAN_TESTFILES_AND_TESTDIR
if test $nerrors -eq 0 ; then
echo "All $TESTNAME tests passed."
exit $EXIT_SUCCESS
else
echo "$TESTNAME tests failed with $nerrors errors."
exit $EXIT_FAILURE
fi
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