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hdf5/tools/h5repack/h5repacktst.c
Jonathan Kim 50e3990f2a [svn-r22805] Purpose: 
HDFFV-8012 - h5repack changes max dims and cause failure if only "-f none" is used without changing layout for chunked dataset when a chunk dim is bigger than a dataset dim

Description:
    "h5repack -f <obj>:NONE <file.h5> out.h5" command failed if source file contains chunked dataset and a chunk dim is bigger than a dataset dim. 
    Another issue is that the command changed max dims if chunk dim is smaller than the dataset dim. 
    These issue occurred when dataset size is smaller than 64k (compact size limit)
    Fixed them.

Tested: 
    jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  Windows (32-LE cmake), cmake (jam)
2012-09-24 18:13:57 -05:00

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "h5repack.h"
#include "h5test.h"
#include "h5diff.h"
#include "h5tools.h"
#include "h5tools_utils.h"
#define GOERROR {H5_FAILED(); goto error;}
/* fill value test */
#define FNAME0 "h5repack_fill.h5"
#define FNAME0OUT "h5repack_fill_out.h5"
/* HDF5 objects and all dataset datatypes */
#define FNAME1 "h5repack_objs.h5"
#define FNAME1OUT "h5repack_objs_out.h5"
/* attributes, all datatypes */
#define FNAME2 "h5repack_attr.h5"
#define FNAME2OUT "h5repack_attr_out.h5"
/* hard links */
#define FNAME3 "h5repack_hlink.h5"
#define FNAME3OUT "h5repack_hlink_out.h5"
/* layout */
#define FNAME4 "h5repack_layout.h5"
#define FNAME4OUT "h5repack_layout_out.h5"
/* H5D_ALLOC_TIME_EARLY */
#define FNAME5 "h5repack_early.h5"
#define FNAME5OUT "h5repack_early_out.h5"
#define FNAME6 "h5repack_early2.h5"
#ifdef H5_HAVE_FILTER_SZIP
/* SZIP filter */
#define FNAME7 "h5repack_szip.h5"
#define FNAME7OUT "h5repack_szip_out.h5"
#endif
/* GZIP filter */
#define FNAME8 "h5repack_deflate.h5"
#define FNAME8OUT "h5repack_deflate_out.h5"
/* GZIP filter */
#define FNAME9 "h5repack_shuffle.h5"
#define FNAME9OUT "h5repack_shuffle_out.h5"
/* Fletcher filter */
#define FNAME10 "h5repack_fletcher.h5"
#define FNAME10OUT "h5repack_fletcher_out.h5"
/* All filters */
#define FNAME11 "h5repack_filters.h5"
#define FNAME11OUT "h5repack_filters_out.h5"
/* NBit filter */
#define FNAME12 "h5repack_nbit.h5"
#define FNAME12OUT "h5repack_nbit_out.h5"
/* Scale Offset filter */
#define FNAME13 "h5repack_soffset.h5"
#define FNAME13OUT "h5repack_soffset_out.h5"
/* Big file to test read by hyperslabs */
#define FNAME14 "h5repack_big.h5"
#define FNAME14OUT "h5repack_big_out.h5"
/* external file */
#define FNAME15 "h5repack_ext.h5"
#define FNAME15OUT "h5repack_ext_out.h5"
/* File w/userblock */
#define FNAME16 "h5repack_ub.h5"
#define FNAME16OUT "h5repack_ub_out.h5"
/* Named datatypes */
#define FNAME17 "h5repack_named_dtypes.h5"
#define FNAME17OUT "h5repack_named_dtypes_out.h5"
#define FNAME18 "h5repack_layout2.h5"
#define FNAME_UB "ublock.bin"
/* obj and region references */
#define FNAME_REF "h5repack_refs.h5"
/* obj and region references in attr of compound and vlen type */
#define FNAME_ATTR_REF "h5repack_attr_refs.h5"
const char *H5REPACK_FILENAMES[] = {
"h5repack_big_out",
NULL
};
#define H5REPACK_EXTFILE "h5repack_ext.bin"
/* Name of tool */
#define PROGRAMNAME "h5repacktst"
#define DIM1 40
#define DIM2 20
#define CDIM1 DIM1/2
#define CDIM2 DIM2/2
#define RANK 2
/* Size of userblock (for userblock test) */
#define USERBLOCK_SIZE 2048
/* obj and region references */
#define NAME_OBJ_DS1 "Dset1"
#define NAME_OBJ_GRP "Group"
#define NAME_OBJ_NDTYPE "NamedDatatype"
#define NAME_OBJ_DS2 "Dset2"
#define REG_REF_DS1 "Dset_REGREF"
/*-------------------------------------------------------------------------
* prototypes
*-------------------------------------------------------------------------
*/
static int make_all_objects(hid_t loc_id);
static int make_attributes(hid_t loc_id);
static int make_hlinks(hid_t loc_id);
static int make_early(void);
static int make_layout(hid_t loc_id);
static int make_layout2(hid_t loc_id);
static int make_layout3(hid_t loc_id);
#ifdef H5_HAVE_FILTER_SZIP
static int make_szip(hid_t loc_id);
#endif /* H5_HAVE_FILTER_SZIP */
static int make_deflate(hid_t loc_id);
static int make_shuffle(hid_t loc_id);
static int make_fletcher32(hid_t loc_id);
static int make_nbit(hid_t loc_id);
static int make_scaleoffset(hid_t loc_id);
static int make_all_filters(hid_t loc_id);
static int make_fill(hid_t loc_id);
static int make_big(hid_t loc_id);
static int make_testfiles(void);
static int write_dset_in(hid_t loc_id,const char* dset_name,hid_t file_id,int make_diffs );
static int write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs );
static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *dset_name,hid_t tid,void *buf );
static int make_dset(hid_t loc_id,const char *name,hid_t sid,hid_t dcpl,void *buf);
static int make_attr(hid_t loc_id,int rank,hsize_t *dims,const char *attr_name,hid_t tid,void *buf);
static int make_dset_reg_ref(hid_t loc_id);
static int make_external(hid_t loc_id);
static int make_userblock(void);
static int verify_userblock( const char* filename);
static int make_userblock_file(void);
static int make_named_dtype(hid_t loc_id);
static int make_references(hid_t loc_id);
static int make_complex_attr_references(hid_t loc_id);
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: Executes h5repack tests
*
* Return: Success: zero
* Failure: 1
*
* Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
* January, 6, 2004
*
*-------------------------------------------------------------------------
*/
int main (void)
{
pack_opt_t pack_options;
diff_opt_t diff_options;
hsize_t fs_size = 0; /* free space section threshold */
H5F_file_space_type_t fs_type = H5F_FILE_SPACE_DEFAULT; /* file space handling strategy */
h5_stat_t file_stat;
h5_stat_size_t fsize1, fsize2; /* file sizes */
#if defined (H5_HAVE_FILTER_SZIP)
int szip_can_encode = 0;
#endif
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* Initialize h5tools lib */
h5tools_init();
/* initialize */
HDmemset(&diff_options, 0, sizeof (diff_opt_t));
HDmemset(&pack_options, 0, sizeof (pack_opt_t));
/* run tests */
puts("Testing h5repack:");
/* make the test files */
TESTING(" generating datasets");
if (make_testfiles() < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* Format of the tests:
*
* 1) make a copy of the file with h5repack
* 2) use the h5diff function to compare the input and output file
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* file with fill values
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (fill values)");
/* fs_type = 0; fs_size = 0 */
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME0,FNAME0OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME0, FNAME0OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME0,FNAME0OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* file with all kinds of dataset datatypes
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (all datatypes)");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME1,FNAME1OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* file with attributes
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (attributes)");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME2,FNAME2OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME2, FNAME2OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME2,FNAME2OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* file with hardlinks
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (hardlinks)");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME3,FNAME3OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME3, FNAME3OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME3,FNAME3OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* alloc early test
*-------------------------------------------------------------------------
*/
TESTING(" copy of allocation early file");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME5,FNAME5OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME5, FNAME5OUT, &pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* the remaining files differ in the dcpl's
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* deflate
*-------------------------------------------------------------------------
*/
TESTING(" adding deflate filter");
#ifdef H5_HAVE_FILTER_DEFLATE
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding deflate filter to all");
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("GZIP=1",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* SZIP
*-------------------------------------------------------------------------
*/
TESTING(" adding szip filter");
#if defined (H5_HAVE_FILTER_SZIP)
if (h5tools_can_encode(H5Z_FILTER_SZIP) >0) {
szip_can_encode = 1;
}
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset2:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding szip filter to all");
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("SZIP=8,NN",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" addding shuffle filter");
#ifdef H5_HAVE_FILTER_SHUFFLE
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" addding shuffle filter to all");
#ifdef H5_HAVE_FILTER_SHUFFLE
/* fs_type = H5F_FILE_SPACE_ALL_PERSIST; fs_size = 1 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack_addfilter("SHUF",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" adding checksum filter");
#ifdef H5_HAVE_FILTER_FLETCHER32
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset1:FLET",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding checksum filter to all");
#ifdef H5_HAVE_FILTER_FLETCHER32
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("FLET",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" filter queue fletcher, shuffle, deflate, szip");
/*-------------------------------------------------------------------------
* add some filters
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options) < 0)
GOERROR;
#if defined (H5_HAVE_FILTER_FLETCHER32)
if (h5repack_addfilter("dset1:FLET",&pack_options) < 0)
GOERROR;
#endif
#ifdef H5_HAVE_FILTER_SHUFFLE
if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0)
GOERROR;
#endif
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
if (h5repack_addfilter("dset1:SZIP=8,NN",&pack_options) < 0)
GOERROR;
}
#endif
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_addfilter("dset1:GZIP=1",&pack_options) < 0)
GOERROR;
#endif
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout chunked");
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding layout chunked to all");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout contiguous");
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout contiguous to all");
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
/*-------------------------------------------------------------------------
* do the same test for a file with filters (chunked)
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout compact");
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout compact to all");
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
/* fs_type = H5F_FILE_SPACE_ALL; fs_size = 2 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack_addlayout("COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout compact to contiguous conversion");
/*-------------------------------------------------------------------------
* layout compact to contiguous conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_compact:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout compact to chunk conversion");
/*-------------------------------------------------------------------------
* layout compact to chunk conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout compact to compact conversion");
/*-------------------------------------------------------------------------
* layout compact to compact conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_compact:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout contiguous to compact conversion");
/*-------------------------------------------------------------------------
* layout contiguous to compact conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout contiguous to chunk conversion");
/*-------------------------------------------------------------------------
* layout contiguous to chunk conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout contiguous to contiguous conversion");
/*-------------------------------------------------------------------------
* layout contiguous to contiguous conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout chunked to compact conversion");
/*-------------------------------------------------------------------------
* layout chunked to compact conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_chunk:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout chunked to contiguous conversion");
/*-------------------------------------------------------------------------
* layout chunked to contiguous conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_chunk:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout chunked to chunk conversion");
/*-------------------------------------------------------------------------
* layout chunked to chunked conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* the following tests assume the input files have filters
* FNAME7
* FNAME8
* FNAME9
* FNAME10
* FNAME11
*-------------------------------------------------------------------------
*/
TESTING(" copy of szip filter");
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
/* fs_type = H5F_FILE_SPACE_AGGR_VFD; fs_size = 3 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME7,FNAME7OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" removing szip filter");
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_szip:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" copy of deflate filter");
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing deflate filter");
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_init (&pack_options, 0, fs_type, ++fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_deflate:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of shuffle filter");
#ifdef H5_HAVE_FILTER_SHUFFLE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing shuffle filter");
#ifdef H5_HAVE_FILTER_SHUFFLE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_shuffle:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of fletcher filter");
#ifdef H5_HAVE_FILTER_FLETCHER32
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing fletcher filter");
#ifdef H5_HAVE_FILTER_FLETCHER32
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of nbit filter");
#ifdef H5_HAVE_FILTER_NBIT
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing nbit filter");
#ifdef H5_HAVE_FILTER_NBIT
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_nbit:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" adding nbit filter");
#ifdef H5_HAVE_FILTER_NBIT
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_int31:NBIT",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of scaleoffset filter");
#ifdef H5_HAVE_FILTER_SCALEOFFSET
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing scaleoffset filter");
#ifdef H5_HAVE_FILTER_SCALEOFFSET
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" adding scaleoffset filter");
#ifdef H5_HAVE_FILTER_SCALEOFFSET
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* file with all filters
* dset_all
* dset_deflate
* dset_szip
* dset_shuffle
* dset_fletcher32
*-------------------------------------------------------------------------
*/
TESTING(" filter conversion from deflate to szip");
#if defined (H5_HAVE_FILTER_SZIP) \
&& defined (H5_HAVE_FILTER_DEFLATE) \
&& defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
if (szip_can_encode) {
/* fs_type = H5F_FILE_SPACE_VFD; fs_size = 4 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" filter conversion from szip to deflate");
#if defined (H5_HAVE_FILTER_SZIP) \
&& defined (H5_HAVE_FILTER_DEFLATE) \
&& defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test the NONE global option
*-------------------------------------------------------------------------
*/
TESTING(" removing all filters");
#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) \
&& defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test a big file
*-------------------------------------------------------------------------
*/
TESTING(" big file");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME14,FNAME14OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME14, FNAME14OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test external dataset
*-------------------------------------------------------------------------
*/
TESTING(" external datasets");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME15,FNAME15OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME15,FNAME15OUT,NULL,NULL,&diff_options) > 0)
GOERROR;
if (h5repack_verify(FNAME15, FNAME15OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test file with userblock
*-------------------------------------------------------------------------
*/
TESTING(" file with userblock");
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if(h5repack(FNAME16, FNAME16OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME16, FNAME16OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME16, FNAME16OUT, &pack_options) <= 0)
GOERROR;
if(verify_userblock(FNAME16OUT) < 0)
GOERROR;
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test --latest options
*-------------------------------------------------------------------------
*/
TESTING(" latest file format options");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
pack_options.latest=1;
pack_options.grp_compact=10;
pack_options.grp_indexed=5;
pack_options.msg_size[0] = 10;
pack_options.msg_size[1] = 20;
pack_options.msg_size[2] = 30;
pack_options.msg_size[3] = 40;
pack_options.msg_size[4] = 50;
if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) > 0)
GOERROR;
if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test several global filters
*-------------------------------------------------------------------------
*/
TESTING(" several global filters");
#if defined (H5_HAVE_FILTER_DEFLATE) && defined (H5_HAVE_FILTER_SHUFFLE)
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("GZIP=1",&pack_options) < 0)
GOERROR;
if (h5repack_addfilter("SHUF",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test file with userblock
*-------------------------------------------------------------------------
*/
TESTING(" file with added userblock");
#ifdef H5_HAVE_FILTER_DEFLATE
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
/* add the options for a user block size and user block filename */
pack_options.ublock_size = USERBLOCK_SIZE;
pack_options.ublock_filename = FNAME_UB;
if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0)
GOERROR;
if(verify_userblock(FNAME8OUT) < 0)
GOERROR;
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test file with aligment
*-------------------------------------------------------------------------
*/
TESTING(" file with aligment");
#ifdef H5_HAVE_FILTER_DEFLATE
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
/* add the options for aligment */
pack_options.alignment = 1;
pack_options.threshold = 1;
if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0)
GOERROR;
/* verify aligment */
{
hsize_t threshold;
hsize_t alignment;
hid_t fapl;
hid_t fid;
if (( fid = H5Fopen(FNAME8OUT, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0 )
GOERROR;
if ((fapl = H5Fget_access_plist(fid)) < 0)
GOERROR;
if ( H5Pget_alignment(fapl, &threshold, &alignment ) < 0)
GOERROR;
if ( threshold != 1 )
GOERROR;
if ( alignment != 1 )
GOERROR;
if ( H5Pclose(fapl) < 0)
GOERROR;
if (H5Fclose(fid) < 0)
GOERROR;
}
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test file with userblock
*-------------------------------------------------------------------------
*/
TESTING(" file with committed datatypes");
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if(h5repack(FNAME17, FNAME17OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME17, FNAME17OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME17, FNAME17OUT, &pack_options) <= 0)
GOERROR;
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test --metadata_block_size option
* Also verify that output file using the metadata_block_size option is
* larger than the output file one not using it.
* FNAME4 is used because it is the same as the test file used for the
* shell script version of this test (h5repack.sh).
*-------------------------------------------------------------------------
*/
TESTING(" metadata block size option");
/* First run without metadata option. No need to verify the correctness */
/* since this has been verified by earlier tests. Just record the file */
/* size of the output file. */
if(h5repack_init(&pack_options, 0, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0)
GOERROR;
if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0)
GOERROR;
if(HDstat(FNAME4OUT, &file_stat) < 0)
GOERROR;
fsize1 = file_stat.st_size;
if(h5repack_end(&pack_options) < 0)
GOERROR;
/* run it again with metadata option */
if(h5repack_init(&pack_options, 0, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0)
GOERROR;
pack_options.meta_block_size = 8192;
if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0)
GOERROR;
/* record the file size of the output file */
if(HDstat(FNAME4OUT, &file_stat) < 0)
GOERROR;
fsize2 = file_stat.st_size;
/* verify second file size is larger than the first one */
if(fsize2 <= fsize1)
GOERROR;
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* clean temporary test files
*-------------------------------------------------------------------------
*/
{
hid_t fapl;
/* setup */
h5_reset();
fapl = h5_fileaccess();
h5_cleanup(H5REPACK_FILENAMES, fapl);
}
puts("All h5repack tests passed.");
return 0;
error:
puts("***** H5REPACK TESTS FAILED *****");
return 1;
}
/*-------------------------------------------------------------------------
* Function: make_testfiles
*
* Purpose: make a test file with all types of HDF5 objects,
* datatypes and filters
*
*-------------------------------------------------------------------------
*/
static
int make_testfiles(void)
{
hid_t fid;
/*-------------------------------------------------------------------------
* create a file for general copy test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME0,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_fill(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create another file for general copy test (all datatypes)
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_all_objects(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for attributes copy test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_attributes(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for hard links test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_hlinks(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for layouts test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME4,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_layout(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for layout conversion test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
if(make_layout2(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* for test layout conversions form chunk with unlimited max dims
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate("h5repack_layout3.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
if(make_layout3(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for the H5D_ALLOC_TIME_EARLY test
*-------------------------------------------------------------------------
*/
if (make_early() < 0)
goto out;
/*-------------------------------------------------------------------------
* create a file with the SZIP filter
*-------------------------------------------------------------------------
*/
#ifdef H5_HAVE_FILTER_SZIP
if((fid = H5Fcreate(FNAME7,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_szip(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
#endif /* H5_HAVE_FILTER_SZIP */
/*-------------------------------------------------------------------------
* create a file with the deflate filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME8,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_deflate(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the shuffle filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME9,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_shuffle(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the fletcher32 filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME10,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_fletcher32(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with all the filters
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME11,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_all_filters(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the nbit filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME12,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_nbit(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the scaleoffset filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME13,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_scaleoffset(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a big dataset
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME14,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_big(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with external dataset
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME15,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_external(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with userblock
*-------------------------------------------------------------------------
*/
if(make_userblock() < 0)
goto out;
/*-------------------------------------------------------------------------
* create a userblock file
*-------------------------------------------------------------------------
*/
if(make_userblock_file() < 0)
goto out;
/*-------------------------------------------------------------------------
* create a file with named datatypes
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME17,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_named_dtype(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create obj and region reference type datasets (bug1814)
* add attribute with int type (bug1726)
* add attribute with obj and region reference type (bug1726)
*-------------------------------------------------------------------------*/
if((fid = H5Fcreate(FNAME_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
/* create reference type datasets */
if (make_references(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with obj and region references in attribute of compound and
* vlen datatype
*-------------------------------------------------------------------------*/
if((fid = H5Fcreate(FNAME_ATTR_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_complex_attr_references(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
return 0;
out:
H5Fclose(fid);
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_all_objects
*
* Purpose: make a test file with all types of HDF5 objects
*
*-------------------------------------------------------------------------
*/
static
int make_all_objects(hid_t loc_id)
{
hid_t did=-1;
hid_t gid=-1;
hid_t tid=-1;
hid_t rid=-1;
hid_t sid=-1;
hid_t gcplid=-1;
hsize_t dims[1]={2};
/* compound datatype */
typedef struct s_t
{
int a;
float b;
} s_t;
/*-------------------------------------------------------------------------
* H5G_DATASET
*-------------------------------------------------------------------------
*/
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "dset_referenced", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_GROUP
*-------------------------------------------------------------------------
*/
if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Gclose(gid) < 0)
goto out;
/* create a group "g2" with H5P_CRT_ORDER_TRACKED set */
if ((gcplid = H5Pcreate(H5P_GROUP_CREATE)) < 0)
goto out;
if (H5Pset_link_creation_order(gcplid, H5P_CRT_ORDER_TRACKED) < 0)
goto out;
if ((gid = H5Gcreate2(loc_id, "g2", H5P_DEFAULT, gcplid, H5P_DEFAULT)) < 0)
goto out;
if (H5Gclose(gid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_TYPE
*-------------------------------------------------------------------------
*/
/* create a compound datatype */
if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_INT) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT) < 0)
goto out;
if (H5Tcommit2(loc_id, "type", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_LINK
*-------------------------------------------------------------------------
*/
if (H5Lcreate_soft("dset", loc_id, "link", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_UDLINK
*-------------------------------------------------------------------------
*/
/* Create an external link. Other UD links are not supported by h5repack */
if (H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* write a series of datasetes at root
*-------------------------------------------------------------------------
*/
if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0)
goto out;
if (write_dset_in(rid,"dset_referenced",loc_id,0) < 0)
goto out;
if (H5Gclose(rid) < 0)
goto out;
/* close */
if (H5Dclose(did) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Pclose(gcplid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Dclose(did);
H5Gclose(gid);
H5Gclose(rid);
H5Sclose(sid);
H5Tclose(tid);
H5Pclose(gcplid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_attributes
*
* Purpose: make a test file with all types of attributes
*
*-------------------------------------------------------------------------
*/
static
int make_attributes(hid_t loc_id)
{
hid_t did=-1;
hid_t gid=-1;
hid_t rid=-1;
hid_t sid=-1;
hsize_t dims[1]={2};
/*-------------------------------------------------------------------------
* H5G_DATASET
*-------------------------------------------------------------------------
*/
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_GROUP
*-------------------------------------------------------------------------
*/
if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0)
goto out;
/*-------------------------------------------------------------------------
* write a series of attributes on the dataset, group, and root group
*-------------------------------------------------------------------------
*/
if ( write_attr_in(did,"dset",loc_id,0) < 0)
goto out;
if (write_attr_in(gid,"dset",loc_id,0) < 0)
goto out;
if (write_attr_in(rid,"dset",loc_id,0) < 0)
goto out;
/* close */
if (H5Dclose(did) < 0)
goto out;
if (H5Gclose(gid) < 0)
goto out;
if (H5Gclose(rid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Dclose(did);
H5Gclose(gid);
H5Gclose(rid);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_hlinks
*
* Purpose: make a test file with hard links
*
*-------------------------------------------------------------------------
*/
static
int make_hlinks(hid_t loc_id)
{
hid_t g1id=-1;
hid_t g2id=-1;
hid_t g3id=-1;
hsize_t dims[2]={3,2};
int buf[3][2]= {{1,1},{1,2},{2,2}};
/*-------------------------------------------------------------------------
* create a dataset and some hard links to it
*-------------------------------------------------------------------------
*/
if(write_dset(loc_id, 2, dims, "dset", H5T_NATIVE_INT, buf) < 0)
return -1;
if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link1 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
return -1;
if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link2 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
return -1;
if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link3 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a group and some hard links to it
*-------------------------------------------------------------------------
*/
if((g1id = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if((g2id = H5Gcreate2(g1id, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if((g3id = H5Gcreate2(g2id, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Lcreate_hard(loc_id, "g1", g2id, "link1 to g1", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if(H5Lcreate_hard(g1id, "g2", g3id, "link1 to g2", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/* close */
if (H5Gclose(g1id) < 0)
goto out;
if (H5Gclose(g2id) < 0)
goto out;
if (H5Gclose(g3id) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Gclose(g1id);
H5Gclose(g2id);
H5Gclose(g3id);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_szip
*
* Purpose: make a dataset with the SZIP filter
*
*-------------------------------------------------------------------------
*/
#ifdef H5_HAVE_FILTER_SZIP
static
int make_szip(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
unsigned szip_pixels_per_block=8;
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
int szip_can_encode = 0;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dcpl */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* SZIP
*-------------------------------------------------------------------------
*/
/* Make sure encoding is enabled */
if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1)
{
szip_can_encode = 1;
}
if (szip_can_encode)
{
/* set szip data */
if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
goto out;
if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0)
goto out;
}
else
{
/* WARNING? SZIP is decoder only, can't generate test files */
}
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
#endif /* H5_HAVE_FILTER_SZIP */
/*-------------------------------------------------------------------------
* Function: make_deflate
*
* Purpose: make a dataset with the deflate filter
*
*-------------------------------------------------------------------------
*/
static
int make_deflate(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
hobj_ref_t bufref[1]; /* reference */
hsize_t dims1r[1]={1};
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dcpl */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* GZIP
*-------------------------------------------------------------------------
*/
#if defined (H5_HAVE_FILTER_DEFLATE)
/* set deflate data */
if(H5Pset_deflate(dcpl, 9) < 0)
goto out;
if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0)
goto out;
/* create a reference to the dataset, test second seeep of file for references */
if (H5Rcreate(&bufref[0],loc_id,"dset_deflate",H5R_OBJECT,-1) < 0)
goto out;
if (write_dset(loc_id,1,dims1r,"ref",H5T_STD_REF_OBJ,bufref) < 0)
goto out;
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_shuffle
*
* Purpose: make a dataset with the shuffle filter
*
*-------------------------------------------------------------------------
*/
static
int make_shuffle(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dcpl */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* shuffle
*-------------------------------------------------------------------------
*/
#if defined (H5_HAVE_FILTER_SHUFFLE)
/* set the shuffle filter */
if (H5Pset_shuffle(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0)
goto out;
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_fletcher32
*
* Purpose: make a dataset with the fletcher32 filter
*
*-------------------------------------------------------------------------
*/
static
int make_fletcher32(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* fletcher32
*-------------------------------------------------------------------------
*/
#if defined (H5_HAVE_FILTER_FLETCHER32)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set the checksum filter */
if (H5Pset_fletcher32(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0)
goto out;
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_nbit
*
* Purpose: make a dataset with the nbit filter
*
*-------------------------------------------------------------------------
*/
static
int make_nbit(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hid_t dtid;
hid_t dsid;
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
dtid = H5Tcopy(H5T_NATIVE_INT);
if (H5Tset_precision(dtid,(H5Tget_precision(dtid) - 1)) < 0)
{
H5Tclose(dtid);
goto out;
}
#if defined H5_HAVE_FILTER_NBIT
/* remove the filters from the dcpl */
if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0)
{
H5Tclose(dtid);
goto out;
}
if(H5Pset_nbit(dcpl) < 0) {
H5Tclose(dtid);
goto out;
}
if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Dclose(dsid);
if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) {
H5Tclose(dtid);
goto out;
}
if((dsid = H5Dcreate2(loc_id, "dset_int31", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Dclose(dsid);
#endif
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if (H5Tclose(dtid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_scaleoffset
*
* Purpose: make a dataset with the scaleoffset filter
*
*-------------------------------------------------------------------------
*/
static
int make_scaleoffset(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hid_t dtid;
hid_t dsid;
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
dtid = H5Tcopy(H5T_NATIVE_INT);
#if defined (H5_HAVE_FILTER_SCALEOFFSET)
/* remove the filters from the dcpl */
if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Pset_scaleoffset(dcpl, H5Z_SO_INT, 31) < 0) {
H5Tclose(dtid);
goto out;
}
if((dsid = H5Dcreate2(loc_id, "dset_scaleoffset", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Dclose(dsid);
if((dsid = H5Dcreate2(loc_id, "dset_none", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Tclose(dtid);
H5Dclose(dsid);
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_all_filters
*
* Purpose: make a file with all filters
*
*-------------------------------------------------------------------------
*/
static
int make_all_filters(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
#if defined (H5_HAVE_FILTER_NBIT)
hid_t dtid;
hid_t dsid;
#endif /* H5_HAVE_FILTER_NBIT */
#if defined (H5_HAVE_FILTER_SZIP)
unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
unsigned szip_pixels_per_block=8;
#endif /* H5_HAVE_FILTER_SZIP */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
#if defined (H5_HAVE_FILTER_SZIP)
int szip_can_encode = 0;
#endif
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
#if defined (H5_HAVE_FILTER_SHUFFLE)
/* set the shuffle filter */
if (H5Pset_shuffle(dcpl) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_FLETCHER32)
/* set the checksum filter */
if (H5Pset_fletcher32(dcpl) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_SZIP)
if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1)
{
szip_can_encode = 1;
}
if (szip_can_encode)
{
/* set szip data */
if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
goto out;
} else {
/* WARNING? SZIP is decoder only, can't generate test data using szip */
}
#endif
#if defined (H5_HAVE_FILTER_DEFLATE)
/* set deflate data */
if(H5Pset_deflate(dcpl, 9) < 0)
goto out;
#endif
if (make_dset(loc_id,"dset_all",sid,dcpl,buf) < 0)
goto out;
#if defined (H5_HAVE_FILTER_FLETCHER32)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set the checksum filter */
if (H5Pset_fletcher32(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0)
goto out;
#endif
/* Make sure encoding is enabled */
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode)
{
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set szip data */
if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
goto out;
if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0)
goto out;
} else
{
/* WARNING? SZIP is decoder only, can't generate test dataset */
}
#endif
#if defined (H5_HAVE_FILTER_SHUFFLE)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set the shuffle filter */
if (H5Pset_shuffle(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_DEFLATE)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set deflate data */
if(H5Pset_deflate(dcpl, 1) < 0)
goto out;
if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_NBIT)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0)
goto out;
/* set the shuffle filter */
if (H5Pset_nbit(dcpl) < 0)
goto out;
if ((dtid = H5Tcopy(H5T_NATIVE_INT)) < 0)
goto out;
if (H5Tset_precision(dtid, (H5Tget_precision(dtid) - 1)) < 0)
goto out;
if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
/* close */
if(H5Tclose(dtid) < 0)
return -1;
if(H5Dclose(dsid) < 0)
return -1;
#endif
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_early
*
* Purpose: create a file for the H5D_ALLOC_TIME_EARLY test
*
*-------------------------------------------------------------------------
*/
static
int make_early(void)
{
hsize_t dims[1] ={3000};
hsize_t cdims[1]={30};
hid_t fid=-1;
hid_t did=-1;
hid_t sid=-1;
hid_t tid=-1;
hid_t dcpl=-1;
int i;
char name[10];
int iter=100;
if ((fid = H5Fcreate(FNAME5, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
if (H5Fclose(fid) < 0)
goto out;
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if (H5Pset_chunk(dcpl, 1, cdims) < 0)
goto out;
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
goto out;
for(i = 0; i < iter; i++)
{
if ((fid = H5Fopen(FNAME5, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
goto out;
if ((did = H5Dcreate2(fid, "early", H5T_NATIVE_DOUBLE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0)
goto out;
sprintf(name, "%d", i);
if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Ldelete(fid, "early", H5P_DEFAULT) < 0)
goto out;
if (H5Fclose(fid) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* do the same without close/opening the file and creating the dataset
*-------------------------------------------------------------------------
*/
if ((fid = H5Fcreate(FNAME6, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
for(i = 0; i < iter; i++)
{
if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0)
goto out;
sprintf(name, "%d", i);
if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
}
if (H5Sclose(sid) < 0)
goto out;
if (H5Pclose(dcpl) < 0)
goto out;
if (H5Fclose(fid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Tclose(tid);
H5Pclose(dcpl);
H5Sclose(sid);
H5Dclose(did);
H5Fclose(fid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_layout
*
* Purpose: make several datasets with several layouts in location LOC_ID
*
*-------------------------------------------------------------------------
*/
static
int make_layout(hid_t loc_id)
{
hid_t dcpl=-1; /* dataset creation property list */
hid_t sid=-1; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
char name[6];
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/*-------------------------------------------------------------------------
* make several dataset with no filters
*-------------------------------------------------------------------------
*/
for (i=0; i<4; i++)
{
sprintf(name,"dset%d",i+1);
if (write_dset(loc_id,RANK,dims,name,H5T_NATIVE_INT,buf) < 0)
return -1;
}
/*-------------------------------------------------------------------------
* make several dataset with several layout options
*-------------------------------------------------------------------------
*/
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* H5D_COMPACT
*-------------------------------------------------------------------------
*/
if(H5Pset_layout (dcpl,H5D_COMPACT) < 0)
goto out;
if (make_dset(loc_id,"dset_compact",sid,dcpl,buf) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* H5D_CONTIGUOUS
*-------------------------------------------------------------------------
*/
if(H5Pset_layout (dcpl,H5D_CONTIGUOUS) < 0)
goto out;
if (make_dset(loc_id,"dset_contiguous",sid,dcpl,buf) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* H5D_CHUNKED
*-------------------------------------------------------------------------
*/
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
if (make_dset(loc_id,"dset_chunk",sid,dcpl,buf) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_layout2
*
* Purpose: create datasets with contiguous and chunked layouts:
*
* contig_small: < 1k, fixed dims datspace
* chunked_small_fixed: < 1k, fixed dims dataspace
*
*-------------------------------------------------------------------------
*/
#define S_DIM1 4
#define S_DIM2 10
#define CONTIG_S "contig_small"
#define CHUNKED_S_FIX "chunked_small_fixed"
static
int make_layout2(hid_t loc_id)
{
hid_t contig_dcpl = -1; /* dataset creation property list */
hid_t chunked_dcpl = -1; /* dataset creation property list */
int i, j, n; /* Local index variables */
int ret_value = -1; /* Return value */
hid_t s_sid = -1; /* dataspace ID */
hsize_t s_dims[RANK] = {S_DIM1,S_DIM2}; /* Dataspace (< 1 k) */
hsize_t chunk_dims[RANK] = {S_DIM1/2, S_DIM2/2}; /* Dimension sizes for chunks */
int s_buf[S_DIM1][S_DIM2]; /* Temporary buffer */
for(i = n = 0; i < S_DIM1; i++) {
for (j = 0; j < S_DIM2; j++) {
s_buf[i][j] = n++;
}
}
/* Create dataspaces */
if((s_sid = H5Screate_simple(RANK, s_dims, NULL)) < 0)
goto out;
/* Create contiguous datasets */
if((contig_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_layout(contig_dcpl, H5D_CONTIGUOUS) < 0)
goto out;
if(make_dset(loc_id, CONTIG_S, s_sid, contig_dcpl, s_buf) < 0)
goto out;
/* Create chunked datasets */
if((chunked_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_chunk(chunked_dcpl, RANK, chunk_dims) < 0)
goto out;
if(make_dset(loc_id, CHUNKED_S_FIX, s_sid, chunked_dcpl, s_buf) < 0)
goto out;
ret_value = 0;
out:
H5E_BEGIN_TRY {
H5Pclose(contig_dcpl);
H5Pclose(chunked_dcpl);
H5Sclose(s_sid);
} H5E_END_TRY;
return(ret_value);
} /* make_layout2() */
/*-------------------------------------------------------------------------
* Function: make_layout3
*
* Purpose: make chunked datasets with unlimited max dim and chunk dim is
* bigger than current dim. (HDFFV-7933)
* Test for converting chunk to chunk , chunk to conti and chunk
* to compact.
* - The chunk to chunk changes layout bigger than any current dim
* again.
* - The chunk to compact test dataset bigger than 64K, should
* remain original layout.*
*
*-------------------------------------------------------------------------
*/
#define DIM1_L3 300
#define DIM2_L3 200
/* small size */
#define SDIM1_L3 4
#define SDIM2_L3 50
static
int make_layout3(hid_t loc_id)
{
hid_t dcpl1=-1; /* dataset creation property list */
hid_t dcpl2=-1; /* dataset creation property list */
hid_t dcpl3=-1; /* dataset creation property list */
hid_t sid1=-1; /* dataspace ID */
hid_t sid2=-1; /* dataspace ID */
hsize_t dims1[RANK]={DIM1_L3,DIM2_L3};
hsize_t dims2[RANK]={SDIM1_L3,SDIM2_L3};
hsize_t maxdims[RANK]={H5S_UNLIMITED, H5S_UNLIMITED};
hsize_t chunk_dims1[RANK]={DIM1_L3*2,5};
hsize_t chunk_dims2[RANK]={SDIM1_L3 + 2, SDIM2_L3/2};
hsize_t chunk_dims3[RANK]={SDIM1_L3 - 2, SDIM2_L3/2};
int buf1[DIM1_L3][DIM2_L3];
int buf2[SDIM1_L3][SDIM2_L3];
int i, j, n;
/* init buf1 */
for (i=n=0; i<DIM1_L3; i++)
{
for (j=0; j<DIM2_L3; j++)
{
buf1[i][j]=n++;
}
}
/* init buf2 */
for (i=n=0; i<SDIM1_L3; i++)
{
for (j=0; j<SDIM2_L3; j++)
{
buf2[i][j]=n++;
}
}
/*-------------------------------------------------------------------------
* make chunked dataset with
* - dset maxdims are UNLIMIT
* - a chunk dim is bigger than dset dim
* - dset size bigger than compact max (64K)
*-------------------------------------------------------------------------
*/
/* create a space */
if((sid1 = H5Screate_simple(RANK, dims1, maxdims)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl1 = H5Pcreate(H5P_DATASET_CREATE)) < 0)
{
goto out;
}
if(H5Pset_chunk(dcpl1, RANK, chunk_dims1) < 0)
goto out;
if (make_dset(loc_id,"chunk_unlimit1",sid1,dcpl1,buf1) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* make chunked dataset with
* - dset maxdims are UNLIMIT
* - a chunk dim is bigger than dset dim
* - dset size smaller than compact (64K)
*-------------------------------------------------------------------------
*/
/* create a space */
if((sid2 = H5Screate_simple(RANK, dims2, maxdims)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl2 = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_chunk(dcpl2, RANK, chunk_dims2) < 0)
goto out;
if (make_dset(loc_id,"chunk_unlimit2",sid2,dcpl2,buf2) < 0)
goto out;
/*-------------------------------------------------------------------------
* make chunked dataset with
* - dset maxdims are UNLIMIT
* - a chunk dims are smaller than dset dims
* - dset size smaller than compact (64K)
*-------------------------------------------------------------------------
*/
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl3 = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_chunk(dcpl3, RANK, chunk_dims3) < 0)
goto out;
if (make_dset(loc_id,"chunk_unlimit3",sid2,dcpl3,buf2) < 0)
goto out;
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid1) < 0)
goto out;
if(H5Sclose(sid2) < 0)
goto out;
if(H5Pclose(dcpl1) < 0)
goto out;
if(H5Pclose(dcpl2) < 0)
goto out;
if(H5Pclose(dcpl3) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Sclose(sid1);
H5Sclose(sid2);
H5Pclose(dcpl1);
H5Pclose(dcpl2);
H5Pclose(dcpl3);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make a file with an integer dataset with a fill value
*
* Purpose: test copy of fill values
*
*-------------------------------------------------------------------------
*/
static
int make_fill(hid_t loc_id)
{
hid_t did=-1;
hid_t sid=-1;
hid_t dcpl;
hsize_t dims[2]={3,2};
int buf[3][2]= {{1,1},{1,2},{2,2}};
int fillvalue = 2;
/*-------------------------------------------------------------------------
* H5T_INTEGER, write a fill value
*-------------------------------------------------------------------------
*/
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue) < 0)
goto out;
if((sid = H5Screate_simple(2,dims,NULL)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "dset_fill", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
/* close */
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_big
*
* Purpose: used in test read by hyperslabs. Creates a 128MB dataset.
* Only 1 1024Kb hyperslab is written.
*
*-------------------------------------------------------------------------
*/
static
int make_big(hid_t loc_id)
{
hid_t did=-1;
hid_t f_sid=-1;
hid_t m_sid=-1;
hid_t tid;
hid_t dcpl;
hsize_t dims[1]={ H5TOOLS_MALLOCSIZE + 1}; /* dataset dimensions */
hsize_t hs_size[1]; /* hyperslab dimensions */
hsize_t hs_start[1]; /* hyperslab start */
hsize_t chunk_dims[1]={1024}; /* chunk dimensions */
size_t size;
size_t nelmts=(size_t)1024;
signed char fillvalue=-1;
signed char *buf=NULL;
/* write one 1024 byte hyperslab */
hs_start[0] = 0;
hs_size[0] = 1024;
/* create */
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_fill_value(dcpl, H5T_NATIVE_SCHAR, &fillvalue) < 0)
goto out;
if(H5Pset_chunk(dcpl, 1, chunk_dims) < 0)
goto out;
if((f_sid = H5Screate_simple(1,dims,NULL)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_SCHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0)
goto out;
if((tid = H5Dget_type(did)) < 0)
goto out;
if((size = H5Tget_size(tid))<=0)
goto out;
/* initialize buffer to 0 */
buf=(signed char *) calloc( nelmts, size);
if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0)
goto out;
if (H5Dwrite (did,H5T_NATIVE_SCHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0)
goto out;
HDfree(buf);
buf=NULL;
/* close */
if(H5Sclose(f_sid) < 0)
goto out;
if(H5Sclose(m_sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(f_sid);
H5Sclose(m_sid);
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_external
*
* Purpose: create a external dataset
*
*-------------------------------------------------------------------------
*/
static
int make_external(hid_t loc_id)
{
hid_t did=-1;
hid_t sid=-1;
hid_t dcpl;
int buf[2]={1,2};
hsize_t cur_size[1]; /* data space current size */
hsize_t max_size[1]; /* data space maximum size */
hsize_t size;
cur_size[0] = max_size[0] = 2;
size = max_size[0] * sizeof(int);
/* create */
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_external(dcpl, H5REPACK_EXTFILE, (off_t)0, size) < 0)
goto out;
if((sid = H5Screate_simple(1,cur_size, max_size)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "external", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
/* close */
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(dcpl);
H5Sclose(sid);
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_userblock
*
* Purpose: create a file for the userblock copying test
*
*-------------------------------------------------------------------------
*/
static int
make_userblock(void)
{
hid_t fid = -1;
hid_t fcpl = -1;
int fd = -1; /* File descriptor for writing userblock */
char ub[USERBLOCK_SIZE]; /* User block data */
ssize_t nwritten; /* # of bytes written */
size_t u; /* Local index variable */
/* Create file creation property list with userblock set */
if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
goto out;
if(H5Pset_userblock(fcpl, (hsize_t)USERBLOCK_SIZE) < 0)
goto out;
/* Create file with userblock */
if((fid = H5Fcreate(FNAME16, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Fclose(fid) < 0)
goto out;
/* Close file creation property list */
if(H5Pclose(fcpl) < 0)
goto out;
/* Initialize userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
ub[u] = 'a' + (char)(u % 26);
/* Re-open HDF5 file, as "plain" file */
if((fd = HDopen(FNAME16, O_WRONLY, 0644)) < 0)
goto out;
/* Write userblock data */
nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE);
HDassert(nwritten == USERBLOCK_SIZE);
/* Close file */
HDclose(fd);
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(fcpl);
H5Fclose(fid);
} H5E_END_TRY;
if(fd > 0)
HDclose(fd);
return -1;
} /* end make_userblock() */
/*-------------------------------------------------------------------------
* Function: verify_userblock
*
* Purpose: Verify that the userblock was copied correctly
*
*-------------------------------------------------------------------------
*/
static int
verify_userblock( const char* filename)
{
hid_t fid = -1;
hid_t fcpl = -1;
int fd = -1; /* File descriptor for writing userblock */
char ub[USERBLOCK_SIZE]; /* User block data */
hsize_t ub_size = 0; /* User block size */
ssize_t nread; /* # of bytes read */
size_t u; /* Local index variable */
/* Open file with userblock */
if((fid = H5Fopen(filename, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
goto out;
/* Retrieve file creation property list & userblock size */
if((fcpl = H5Fget_create_plist(fid)) < 0)
goto out;
if(H5Pget_userblock(fcpl, &ub_size) < 0)
goto out;
/* Verify userblock size is correct */
if(ub_size != USERBLOCK_SIZE)
goto out;
/* Close file creation property list */
if(H5Pclose(fcpl) < 0)
goto out;
if(H5Fclose(fid) < 0)
goto out;
/* Re-open HDF5 file, as "plain" file */
if((fd = HDopen(filename, O_RDONLY, 0)) < 0)
goto out;
/* Read userblock data */
nread = HDread(fd, ub, (size_t)USERBLOCK_SIZE);
HDassert(nread == USERBLOCK_SIZE);
/* Verify userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
if(ub[u] != (char)('a' + (u % 26)))
goto out;
/* Close file */
HDclose(fd);
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(fcpl);
H5Fclose(fid);
} H5E_END_TRY;
if(fd > 0)
HDclose(fd);
return -1;
} /* end verify_userblock() */
/*-------------------------------------------------------------------------
* Function: make_userblock_file
*
* Purpose: create a file for the userblock add test
*
*-------------------------------------------------------------------------
*/
static int
make_userblock_file(void)
{
int fd = -1; /* File descriptor for writing userblock */
char ub[USERBLOCK_SIZE]; /* User block data */
ssize_t nwritten; /* # of bytes written */
size_t u; /* Local index variable */
/* initialize userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
ub[u] = 'a' + (char)(u % 26);
/* open file */
if((fd = HDopen(FNAME_UB,O_WRONLY|O_CREAT|O_TRUNC, 0644 )) < 0)
goto out;
/* write userblock data */
nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE);
HDassert(nwritten == USERBLOCK_SIZE);
/* close file */
HDclose(fd);
return 0;
out:
if(fd > 0)
HDclose(fd);
return -1;
}
/*-------------------------------------------------------------------------
* Function: write_dset_in
*
* Purpose: write datasets in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int write_dset_in(hid_t loc_id,
const char* dset_name, /* for saving reference to dataset*/
hid_t file_id,
int make_diffs /* flag to modify data buffers */)
{
/* compound datatype */
typedef struct s_t
{
char a;
double b;
} s_t;
typedef enum
{
RED,
GREEN
} e_t;
hid_t did=-1;
hid_t sid=-1;
hid_t tid=-1;
hid_t pid=-1;
int val, i, j, k, n;
float f;
/* create 1D attributes with dimension [2], 2 elements */
hsize_t dims[1]={2};
hsize_t dims1r[1]={2};
char buf1[2][3]= {"ab","de"}; /* string */
char buf2[2]= {1,2}; /* bitfield, opaque */
s_t buf3[2]= {{1,2},{3,4}}; /* compound */
hobj_ref_t buf4[2]; /* reference */
e_t buf45[2]= {RED,GREEN}; /* enum */
hvl_t buf5[2]; /* vlen */
hsize_t dimarray[1]={3}; /* array dimension */
int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
int buf7[2]= {1,2}; /* integer */
float buf8[2]= {1,2}; /* float */
/* create 2D attributes with dimension [3][2], 6 elements */
hsize_t dims2[2]={3,2};
hsize_t dims2r[2]={1,1};
char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */
char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
hobj_ref_t buf42[1][1]; /* reference */
hvl_t buf52[3][2]; /* vlen */
int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
/* create 3D attributes with dimension [4][3][2], 24 elements */
hsize_t dims3[3]={4,3,2};
hsize_t dims3r[3]={1,1,1};
char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq",
"rs","tu","vw","xz","AB","CD","EF","GH",
"IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
char buf23[4][3][2]; /* bitfield, opaque */
s_t buf33[4][3][2]; /* compound */
hobj_ref_t buf43[1][1][1]; /* reference */
hvl_t buf53[4][3][2]; /* vlen */
int buf63[24][3]; /* array */
int buf73[4][3][2]; /* integer */
float buf83[4][3][2]; /* float */
/*-------------------------------------------------------------------------
* 1D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<2; j++)
{
buf1[i][j]='z';
}
}
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (write_dset(loc_id,1,dims,"string",tid,buf1) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/* create hard link */
if (H5Lcreate_hard(loc_id, "string", H5L_SAME_LOC, "string_link", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
buf2[i]=buf2[1]=0;
}
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (write_dset(loc_id,1,dims,"bitfield",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf3[i].a=0; buf3[i].b=0;
}
}
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (write_dset(loc_id,1,dims,"opaque",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf45[i]=GREEN;
}
}
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (write_dset(loc_id,1,dims,"compound",tid,buf3) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* object references ( H5R_OBJECT ) */
buf4[0]=0;
buf4[1]=0;
if (dset_name)
{
if (H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1) < 0)
goto out;
if (write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4) < 0)
goto out;
}
/* Dataset region reference ( H5R_DATASET_REGION ) */
if (make_dset_reg_ref(loc_id) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (write_dset(loc_id,1,dims,"enum",tid,buf45) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
buf5[0].len = 1;
buf5[0].p = malloc( 1 * sizeof(int));
((int *)buf5[0].p)[0]=1;
buf5[1].len = 2;
buf5[1].p = malloc( 2 * sizeof(int));
((int *)buf5[1].p)[0] = 2;
((int *)buf5[1].p)[1] = 3;
if(make_diffs) {
((int *)buf5[0].p)[0] = 0;
((int *)buf5[1].p)[0] = 0;
((int *)buf5[1].p)[1] = 0;
}
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<3; j++)
{
buf6[i][j]=0;
}
}
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (write_dset(loc_id, 1, dims, "array", tid, buf6) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
{
hsize_t TEST_BUFSIZE = (128 * 1024 * 1024); /* 128MB */
double *dbuf; /* information to write */
size_t size;
hsize_t sdims[] = {1};
hsize_t tdims[] = {TEST_BUFSIZE / sizeof(double) + 1};
unsigned u;
/* allocate and initialize array data to write */
size = ( TEST_BUFSIZE / sizeof(double) + 1 ) * sizeof(double);
dbuf = (double*)malloc( size );
if (NULL == dbuf)
{
printf ("\nError: Cannot allocate memory for \"arrayd\" data buffer size %dMB.\n", (int) size / 1000000 );
goto out;
}
for( u = 0; u < TEST_BUFSIZE / sizeof(double) + 1; u++)
dbuf[u] = u;
if (make_diffs)
{
dbuf[5] = 0;
dbuf[6] = 0;
}
/* create a type larger than TEST_BUFSIZE */
if ((tid = H5Tarray_create2(H5T_NATIVE_DOUBLE, 1, tdims)) < 0)
goto out;
size = H5Tget_size(tid);
if ((sid = H5Screate_simple(1, sdims, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "arrayd", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
#if defined(WRITE_ARRAY)
H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, dbuf);
#endif
/* close */
H5Dclose(did);
H5Tclose(tid);
H5Sclose(sid);
HDfree( dbuf );
}
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf7[i]=0;
buf8[i]=0;
}
}
if (write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0)
goto out;
if (write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0)
goto out;
/*-------------------------------------------------------------------------
* 2D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf12, 'z', sizeof buf12);
}
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"string2D",tid,buf12) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf22,0,sizeof buf22);
}
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (write_dset(loc_id,2,dims2,"opaque2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf32,0,sizeof buf32);
}
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"compound2D",tid,buf32) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
if (H5Rcreate(&buf42[0][0], file_id, dset_name, H5R_OBJECT, -1) < 0)
goto out;
if (write_dset(loc_id, 2, dims2r, "refobj2D", H5T_STD_REF_OBJ, buf42) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"enum2D",tid,0) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n = 0;
for(i = 0; i < 3; i++)
{
for(j = 0; j < 2; j++)
{
int l;
buf52[i][j].p = malloc((i + 1) * sizeof(int));
buf52[i][j].len = (size_t)(i + 1);
for(l = 0; l < i + 1; l++)
{
if(make_diffs)
((int *)buf52[i][j].p)[l] = 0;
else
((int *)buf52[i][j].p)[l] = n++;
}
}
}
if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf52) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf62,0,sizeof buf62);
}
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (write_dset(loc_id, 2, dims2, "array2D", tid, buf62) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_INTEGER, write a fill value
*-------------------------------------------------------------------------
*/
if(make_diffs) {
HDmemset(buf72, 0, sizeof buf72);
HDmemset(buf82, 0, sizeof buf82);
}
if ((pid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "integer2D", H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf72) < 0)
goto out;
if (H5Pclose(pid) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_FLOAT
*-------------------------------------------------------------------------
*/
if (write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0)
goto out;
/*-------------------------------------------------------------------------
* 3D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf13,'z',sizeof buf13);
}
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"string3D",tid,buf13) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) buf23[i][j][k]=0;
else buf23[i][j][k]=n++;
}
}
}
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (write_dset(loc_id,3,dims3,"opaque3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) {
buf33[i][j][k].a=0;
buf33[i][j][k].b=0;
}
else {
buf33[i][j][k].a=n++;
buf33[i][j][k].b=n++;
}
}
}
}
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"compound3D",tid,buf33) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
if (H5Rcreate(&buf43[0][0][0], file_id, dset_name, H5R_OBJECT, -1) < 0)
goto out;
if (write_dset(loc_id, 3, dims3r, "refobj3D", H5T_STD_REF_OBJ, buf43) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"enum3D",tid,0) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n = 0;
for(i = 0; i < 4; i++)
{
for(j = 0; j < 3; j++)
{
for(k = 0; k < 2; k++)
{
int l;
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
buf53[i][j][k].len = (size_t)(i + 1);
for(l = 0; l < i + 1; l++)
{
if(make_diffs)
((int *)buf53[i][j][k].p)[l] = 0;
else
((int *)buf53[i][j][k].p)[l] = n++;
}
}
}
}
if ((sid = H5Screate_simple(3, dims3, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf53) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
n = 1;
for(i = 0; i < 24; i++)
{
for(j = 0; j < (int)dimarray[0]; j++)
{
if(make_diffs)
buf63[i][j] = 0;
else
buf63[i][j] = n++;
}
}
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (write_dset(loc_id, 3, dims3, "array3D", tid, buf63) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
n=1; f=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) {
buf73[i][j][k]=0;
buf83[i][j][k]=0;
}
else {
buf73[i][j][k]=n++;
buf83[i][j][k]=f++;
}
}
}
}
if (write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(pid);
H5Sclose(sid);
H5Dclose(did);
H5Tclose(tid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_dset_reg_ref
*
* Purpose: write dataset region references
*
*-------------------------------------------------------------------------
*/
#define SPACE1_RANK 1
#define SPACE1_DIM1 1
#define SPACE2_RANK 2
#define SPACE2_DIM1 10
#define SPACE2_DIM2 10
static
int make_dset_reg_ref(hid_t loc_id)
{
hid_t did1=-1; /* Dataset ID */
hid_t did2=-1; /* Dereferenced dataset ID */
hid_t sid1=-1; /* Dataspace ID #1 */
hid_t sid2=-1; /* Dataspace ID #2 */
hsize_t dims1[] = {SPACE1_DIM1};
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
hdset_reg_ref_t *wbuf=NULL; /* buffer to write to disk */
int *dwbuf=NULL; /* Buffer for writing numeric data to disk */
int i; /* counting variables */
int retval = -1; /* return value */
/* Allocate write & read buffers */
wbuf = (hdset_reg_ref_t *)calloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
dwbuf = (int *)malloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2);
/* Create dataspace for datasets */
if ((sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL)) < 0)
goto out;
/* Create a dataset */
if ((did2 = H5Dcreate2(loc_id, "dsetreg", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
for (i = 0; i < SPACE2_DIM1 * SPACE2_DIM2; i++)
dwbuf[i] = i * 3;
/* Write selection to disk */
if (H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf) < 0)
goto out;
/* Create dataspace for the reference dataset */
if ((sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL)) < 0)
goto out;
/* Create a dataset */
if ((did1 = H5Dcreate2(loc_id, "refreg", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/* Select 6x6 hyperslab for first reference */
start[0] = 2; start[1] = 2;
stride[0] = 1; stride[1] = 1;
count[0] = 6; count[1] = 6;
block[0] = 1; block[1] = 1;
if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block) < 0)
goto out;
/* Store dataset region */
if (H5Rcreate(&wbuf[0], loc_id, "dsetreg", H5R_DATASET_REGION, sid2) < 0)
goto out;
/* Write selection to disk */
if (H5Dwrite(did1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf) < 0)
goto out;
/* Close all objects */
if (H5Sclose(sid1) < 0)
goto out;
if (H5Dclose(did1) < 0)
goto out;
if (H5Sclose(sid2) < 0)
goto out;
if (H5Dclose(did2) < 0)
goto out;
retval = 0;
out:
if(wbuf)
HDfree(wbuf);
if(dwbuf)
HDfree(dwbuf);
H5E_BEGIN_TRY
{
H5Sclose(sid1);
H5Sclose(sid2);
H5Dclose(did1);
H5Dclose(did2);
} H5E_END_TRY;
return retval;
}
/*-------------------------------------------------------------------------
* Function: write_attr_in
*
* Purpose: write attributes in LOC_ID (dataset, group, named datatype)
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int write_attr_in(hid_t loc_id,
const char* dset_name, /* for saving reference to dataset*/
hid_t fid, /* for reference create */
int make_diffs /* flag to modify data buffers */)
{
/* Compound datatype */
typedef struct s_t
{
char a;
double b;
} s_t;
typedef enum
{
RED,
GREEN
} e_t;
hid_t aid = -1;
hid_t sid = -1;
hid_t tid = -1;
int val, i, j, k, n;
float f;
/* create 1D attributes with dimension [2], 2 elements */
hsize_t dims[1]={2};
char buf1[2][3]= {"ab","de"}; /* string */
char buf2[2]= {1,2}; /* bitfield, opaque */
s_t buf3[2]= {{1,2},{3,4}}; /* compound */
hobj_ref_t buf4[2]; /* reference */
e_t buf45[2]= {RED,RED}; /* enum */
hvl_t buf5[2]; /* vlen */
hsize_t dimarray[1]={3}; /* array dimension */
int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
int buf7[2]= {1,2}; /* integer */
float buf8[2]= {1,2}; /* float */
/* create 2D attributes with dimension [3][2], 6 elements */
hsize_t dims2[2]={3,2};
char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */
char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
hobj_ref_t buf42[3][2]; /* reference */
e_t buf452[3][2]; /* enum */
hvl_t buf52[3][2]; /* vlen */
int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
/* create 3D attributes with dimension [4][3][2], 24 elements */
hsize_t dims3[3]={4,3,2};
char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq",
"rs","tu","vw","xz","AB","CD","EF","GH",
"IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
char buf23[4][3][2]; /* bitfield, opaque */
s_t buf33[4][3][2]; /* compound */
hobj_ref_t buf43[4][3][2]; /* reference */
e_t buf453[4][3][2]; /* enum */
hvl_t buf53[4][3][2]; /* vlen */
int buf63[24][3]; /* array */
int buf73[4][3][2]; /* integer */
float buf83[4][3][2]; /* float */
/*-------------------------------------------------------------------------
* 1D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<2; j++)
{
buf1[i][j]='z';
}
}
/*
buf1[2][2]= {"ab","de"};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <string> and <string>
position string of </g1> string of </g1> difference
------------------------------------------------------------
[ 0 ] a z
[ 0 ] b z
[ 1 ] d z
[ 1 ] e z
*/
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (make_attr(loc_id,1,dims,"string",tid,buf1) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
buf2[i]=buf2[1]=0;
}
/*
buf2[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <bitfield> and <bitfield>
position bitfield of </g1> bitfield of </g1> difference
position opaque of </g1> opaque of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (make_attr(loc_id,1,dims,"bitfield",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
/*
buf2[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <opaque> and <opaque>
position opaque of </g1> opaque of </g1> difference
position opaque of </g1> opaque of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (make_attr(loc_id,1,dims,"opaque",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf3[i].a=0; buf3[i].b=0;
}
}
/*
buf3[2]= {{1,2},{3,4}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <compound> and <compound>
position compound of </g1> compound of </g1> difference
------------------------------------------------------------
[ 0 ] 1 5 4
[ 0 ] 2 5 3
[ 1 ] 3 5 2
[ 1 ] 4 5 1
*/
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (make_attr(loc_id,1,dims,"compound",tid,buf3) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* object references ( H5R_OBJECT */
if (dset_name)
{
if (H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
if (H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
if (make_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf45[i]=GREEN;
}
}
/*
buf45[2]= {RED,RED};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <enum> and <enum>
position enum of </g1> enum of </g1> difference
------------------------------------------------------------
[ 0 ] RED GREEN
[ 1 ] RED GREEN
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (make_attr(loc_id,1,dims,"enum",tid,buf45) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
buf5[0].len = 1;
buf5[0].p = malloc( 1 * sizeof(int));
((int *)buf5[0].p)[0]=1;
buf5[1].len = 2;
buf5[1].p = malloc(2 * sizeof(int));
((int *)buf5[1].p)[0] = 2;
((int *)buf5[1].p)[1] = 3;
if(make_diffs)
{
((int *)buf5[0].p)[0] = 0;
((int *)buf5[1].p)[0] = 0;
((int *)buf5[1].p)[1] = 0;
}
/*
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
position vlen of </g1> vlen of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
[ 1 ] 3 0 3
*/
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Awrite(aid, tid, buf5) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0)
goto out;
if (H5Aclose(aid) < 0)
goto out;
aid = -1;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
if (H5Sclose(sid) < 0)
goto out;
sid = -1;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<3; j++)
{
buf6[i][j]=0;
}
}
/*
buf6[2][3]= {{1,2,3},{4,5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <array> and <array>
position array of </g1> array of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 0 ] 2 0 2
[ 0 ] 3 0 3
[ 1 ] 4 0 4
[ 1 ] 5 0 5
[ 1 ] 6 0 6
*/
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (make_attr(loc_id, 1, dims, "array", tid, buf6) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if(make_diffs)
{
for(i = 0; i < 2; i++)
{
buf7[i]=0;
buf8[i]=0;
}
}
/*
buf7[2]= {1,2};
buf8[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
position integer of </g1> integer of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
position float of </g1> float of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
if (make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0)
goto out;
if (make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0)
goto out;
/*-------------------------------------------------------------------------
* 2D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf12, 'z', sizeof buf12);
}
/*
buf12[6][2]= {"ab","cd","ef","gh","ij","kl"};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <string2D> and <string2D>
position string2D of </g1> string2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] a z
[ 0 0 ] b z
[ 0 1 ] c z
[ 0 1 ] d z
[ 1 0 ] e z
[ 1 0 ] f z
[ 1 1 ] g z
[ 1 1 ] h z
[ 2 0 ] i z
[ 2 0 ] j z
[ 2 1 ] k z
[ 2 1 ] l z
*/
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"string2D",tid,buf12) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf22,0,sizeof buf22);
}
/*
buf22[3][2]= {{1,2},{3,4},{5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <bitfield2D> and <bitfield2D>
position bitfield2D of </g1> bitfield2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
/*
buf22[3][2]= {{1,2},{3,4},{5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <opaque2D> and <opaque2D>
position opaque2D of </g1> opaque2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (make_attr(loc_id,2,dims2,"opaque2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf32,0,sizeof buf32);
}
/*
buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <opaque2D> and <opaque2D>
position opaque2D of </g1> opaque2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"compound2D",tid,buf32) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 3; i++)
{
for (j = 0; j < 2; j++)
{
if (H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
}
}
if (make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
for (i=0; i<3; i++)
{
for (j=0; j<2; j++)
{
if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
}
}
/*
Attribute: <enum2D> and <enum2D>
position enum2D of </g1> enum2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] RED GREEN
[ 0 1 ] RED GREEN
[ 1 0 ] RED GREEN
[ 1 1 ] RED GREEN
[ 2 0 ] RED GREEN
[ 2 1 ] RED GREEN
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"enum2D",tid,buf452) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n=0;
for (i = 0; i < 3; i++)
{
for (j = 0; j < 2; j++)
{
int l;
buf52[i][j].p = malloc((i + 1) * sizeof(int));
buf52[i][j].len = (size_t)(i + 1);
for (l = 0; l < i + 1; l++)
if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
else ((int *)buf52[i][j].p)[l] = n++;
}
}
/*
position vlen2D of </g1> vlen2D of </g1> difference
------------------------------------------------------------
[ 0 1 ] 1 0 1
[ 1 0 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 1 1 ] 5 0 5
[ 2 0 ] 6 0 6
[ 2 0 ] 7 0 7
[ 2 0 ] 8 0 8
[ 2 1 ] 9 0 9
[ 2 1 ] 10 0 10
[ 2 1 ] 11 0 11
*/
if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Awrite(aid, tid, buf52) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0)
goto out;
if (H5Aclose(aid) < 0)
goto out;
aid = -1;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
if (H5Sclose(sid) < 0)
goto out;
sid = -1;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf62,0,sizeof buf62);
}
/*
buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <array2D> and <array2D>
position array2D of </g1> array2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 0 ] 2 0 2
[ 0 0 ] 3 0 3
[ 0 1 ] 4 0 4
[ 0 1 ] 5 0 5
[ 0 1 ] 6 0 6
[ 1 0 ] 7 0 7
[ 1 0 ] 8 0 8
[ 1 0 ] 9 0 9
[ 1 1 ] 10 0 10
[ 1 1 ] 11 0 11
[ 1 1 ] 12 0 12
[ 2 0 ] 13 0 13
[ 2 0 ] 14 0 14
[ 2 0 ] 15 0 15
[ 2 1 ] 16 0 16
[ 2 1 ] 17 0 17
[ 2 1 ] 18 0 18
*/
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (make_attr(loc_id, 2, dims2, "array2D", tid, buf62) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if(make_diffs)
{
HDmemset(buf72, 0, sizeof buf72);
HDmemset(buf82, 0, sizeof buf82);
}
/*
Attribute: <integer2D> and <integer2D>
position integer2D of </g1> integer2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
6 differences found
Attribute: <float2D> and <float2D>
position float2D of </g1> float2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if (make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0)
goto out;
/*-------------------------------------------------------------------------
* 3D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
HDmemset(buf13,'z',sizeof buf13);
}
/*
buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
"rs","tu","vw","xz","AB","CD","EF","GH",
"IJ","KL","MN","PQ","RS","TU","VW","XZ"};
Attribute: <string3D> and <string3D>
position string3D of </g1> string3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] a z
[ 0 0 0 ] b z
[ 0 0 1 ] c z
[ 0 0 1 ] d z
[ 0 1 0 ] e z
[ 0 1 0 ] f z
[ 0 1 1 ] g z
[ 0 1 1 ] h z
[ 0 2 0 ] i z
[ 0 2 0 ] j z
[ 0 2 1 ] k z
[ 0 2 1 ] l z
[ 1 0 0 ] m z
[ 1 0 0 ] n z
[ 1 0 1 ] p z
[ 1 0 1 ] q z
[ 1 1 0 ] r z
[ 1 1 0 ] s z
[ 1 1 1 ] t z
[ 1 1 1 ] u z
[ 1 2 0 ] v z
[ 1 2 0 ] w z
[ 1 2 1 ] x z
[ 2 0 0 ] A z
[ 2 0 0 ] B z
[ 2 0 1 ] C z
[ 2 0 1 ] D z
[ 2 1 0 ] E z
[ 2 1 0 ] F z
[ 2 1 1 ] G z
[ 2 1 1 ] H z
[ 2 2 0 ] I z
[ 2 2 0 ] J z
[ 2 2 1 ] K z
[ 2 2 1 ] L z
[ 3 0 0 ] M z
[ 3 0 0 ] N z
[ 3 0 1 ] P z
[ 3 0 1 ] Q z
[ 3 1 0 ] R z
[ 3 1 0 ] S z
[ 3 1 1 ] T z
[ 3 1 1 ] U z
[ 3 2 0 ] V z
[ 3 2 0 ] W z
[ 3 2 1 ] X z
[ 3 2 1 ] Z z
*/
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"string3D",tid,buf13) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs) buf23[i][j][k]=0;
else buf23[i][j][k]=n++;
}
}
}
/*
position bitfield3D of </g1> bitfield3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 1 ] 2 0 2
[ 0 1 0 ] 3 0 3
[ 0 1 1 ] 4 0 4
[ 0 2 0 ] 5 0 5
[ 0 2 1 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 1 0 ] 9 0 9
[ 1 1 1 ] 10 0 10
[ 1 2 0 ] 11 0 11
[ 1 2 1 ] 12 0 12
[ 2 0 0 ] 13 0 13
[ 2 0 1 ] 14 0 14
[ 2 1 0 ] 15 0 15
[ 2 1 1 ] 16 0 16
[ 2 2 0 ] 17 0 17
[ 2 2 1 ] 18 0 18
[ 3 0 0 ] 19 0 19
[ 3 0 1 ] 20 0 20
[ 3 1 0 ] 21 0 21
[ 3 1 1 ] 22 0 22
[ 3 2 0 ] 23 0 23
[ 3 2 1 ] 24 0 24
*/
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (make_attr(loc_id,3,dims3,"opaque3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs)
{
buf33[i][j][k].a=0;
buf33[i][j][k].b=0;
}
else
{
buf33[i][j][k].a=n++;
buf33[i][j][k].b=n++;
}
}
}
}
/*position compound3D of </g1> compound3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 0 ] 2 0 2
[ 0 0 1 ] 3 0 3
[ 0 0 1 ] 4 0 4
[ 0 1 0 ] 5 0 5
[ 0 1 0 ] 6 0 6
[ 0 1 1 ] 7 0 7
[ 0 1 1 ] 8 0 8
[ 0 2 0 ] 9 0 9
[ 0 2 0 ] 10 0 10
[ 0 2 1 ] 11 0 11
[ 0 2 1 ] 12 0 12
[ 1 0 0 ] 13 0 13
[ 1 0 0 ] 14 0 14
[ 1 0 1 ] 15 0 15
[ 1 0 1 ] 16 0 16
[ 1 1 0 ] 17 0 17
[ 1 1 0 ] 18 0 18
[ 1 1 1 ] 19 0 19
[ 1 1 1 ] 20 0 20
[ 1 2 0 ] 21 0 21
[ 1 2 0 ] 22 0 22
[ 1 2 1 ] 23 0 23
[ 1 2 1 ] 24 0 24
[ 2 0 0 ] 25 0 25
[ 2 0 0 ] 26 0 26
[ 2 0 1 ] 27 0 27
[ 2 0 1 ] 28 0 28
[ 2 1 0 ] 29 0 29
[ 2 1 0 ] 30 0 30
[ 2 1 1 ] 31 0 31
[ 2 1 1 ] 32 0 32
[ 2 2 0 ] 33 0 33
[ 2 2 0 ] 34 0 34
[ 2 2 1 ] 35 0 35
[ 2 2 1 ] 36 0 36
[ 3 0 0 ] 37 0 37
[ 3 0 0 ] 38 0 38
[ 3 0 1 ] 39 0 39
[ 3 0 1 ] 40 0 40
[ 3 1 0 ] 41 0 41
[ 3 1 0 ] 42 0 42
[ 3 1 1 ] 43 0 43
[ 3 1 1 ] 44 0 44
[ 3 2 0 ] 45 0 45
[ 3 2 0 ] 46 0 46
[ 3 2 1 ] 47 0 47
[ 3 2 1 ] 48 0 48
*/
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"compound3D",tid,buf33) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
if (H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
}
}
if (make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs)
{
buf453[i][j][k]=RED;
}
else
{
buf453[i][j][k]=GREEN;
}
}
}
}
/*
position enum3D of </g1> enum3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] GREEN RED
[ 0 0 1 ] GREEN RED
[ 0 1 0 ] GREEN RED
[ 0 1 1 ] GREEN RED
[ 0 2 0 ] GREEN RED
[ 0 2 1 ] GREEN RED
[ 1 0 0 ] GREEN RED
[ 1 0 1 ] GREEN RED
[ 1 1 0 ] GREEN RED
[ 1 1 1 ] GREEN RED
[ 1 2 0 ] GREEN RED
[ 1 2 1 ] GREEN RED
[ 2 0 0 ] GREEN RED
[ 2 0 1 ] GREEN RED
[ 2 1 0 ] GREEN RED
[ 2 1 1 ] GREEN RED
[ 2 2 0 ] GREEN RED
[ 2 2 1 ] GREEN RED
[ 3 0 0 ] GREEN RED
[ 3 0 1 ] GREEN RED
[ 3 1 0 ] GREEN RED
[ 3 1 1 ] GREEN RED
[ 3 2 0 ] GREEN RED
[ 3 2 1 ] GREEN RED
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"enum3D",tid,buf453) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n=0;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
int l;
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
buf53[i][j][k].len = (size_t)i + 1;
for (l = 0; l < i + 1; l++)
if (make_diffs)
{
((int *)buf53[i][j][k].p)[l] = 0;
}
else
((int *)buf53[i][j][k].p)[l] = n++;
}
}
}
/*
position vlen3D of </g1> vlen3D of </g1> difference
------------------------------------------------------------
[ 0 0 1 ] 1 0 1
[ 0 1 0 ] 2 0 2
[ 0 1 1 ] 3 0 3
[ 0 2 0 ] 4 0 4
[ 0 2 1 ] 5 0 5
[ 1 0 0 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 0 1 ] 9 0 9
[ 1 1 0 ] 10 0 10
etc
*/
if ((sid = H5Screate_simple(3, dims3, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((aid = H5Acreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Awrite(aid, tid, buf53) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0)
goto out;
if (H5Aclose(aid) < 0)
goto out;
aid = -1;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
if (H5Sclose(sid) < 0)
goto out;
sid = -1;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 24; i++)
{
for (j = 0; j < (int)dimarray[0]; j++)
{
if (make_diffs) buf63[i][j]=0;
else buf63[i][j]=n++;
}
}
/*
position array3D of </g1> array3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 0 ] 2 0 2
[ 0 0 0 ] 3 0 3
[ 0 0 1 ] 4 0 4
[ 0 0 1 ] 5 0 5
[ 0 0 1 ] 6 0 6
[ 0 1 0 ] 7 0 7
etc
*/
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (make_attr(loc_id, 3, dims3, "array3D", tid, buf63) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
n = 1; f = 1;
for(i = 0; i < 4; i++)
{
for(j = 0; j < 3; j++)
{
for(k = 0; k < 2; k++)
{
if(make_diffs)
{
buf73[i][j][k] = 0;
buf83[i][j][k] = 0;
}
else
{
buf73[i][j][k] = n++;
buf83[i][j][k] = f++;
}
}
}
}
/*
position integer3D of </g1> integer3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 1 ] 2 0 2
[ 0 1 0 ] 3 0 3
[ 0 1 1 ] 4 0 4
[ 0 2 0 ] 5 0 5
[ 0 2 1 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 1 0 ] 9 0 9
[ 1 1 1 ] 10 0 10
etc
*/
if (make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Aclose(aid);
H5Sclose(sid);
H5Tclose(tid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_dset
*
* Purpose: utility function to create and write a dataset in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int make_dset(hid_t loc_id,
const char *name,
hid_t sid,
hid_t dcpl,
void *buf)
{
hid_t did=-1;
if ((did = H5Dcreate2(loc_id, name, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
return -1;
if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
if (H5Dclose(did) < 0)
return -1;
return 0;
out:
H5E_BEGIN_TRY {
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: write_dset
*
* Purpose: utility function to create and write a dataset in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int write_dset( hid_t loc_id,
int rank,
hsize_t *dims,
const char *dset_name,
hid_t tid,
void *buf )
{
hid_t did=-1;
hid_t sid=-1;
if ((sid = H5Screate_simple(rank, dims, NULL)) < 0)
return -1;
if ((did = H5Dcreate2(loc_id, dset_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (buf)
{
if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
}
if (H5Dclose(did) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Dclose(did);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_attr
*
* Purpose: utility function to write an attribute in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int make_attr(hid_t loc_id,
int rank,
hsize_t *dims,
const char *attr_name,
hid_t tid,
void *buf)
{
hid_t aid;
hid_t sid;
if ((sid = H5Screate_simple(rank, dims, NULL)) < 0)
return -1;
if ((aid = H5Acreate2(loc_id, attr_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(buf)
{
if(H5Awrite(aid, tid, buf) < 0)
goto out;
}
if (H5Aclose(aid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Aclose(aid);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_named_dtype
*
* Purpose: create a file with named datatypes in various configurations
*
*-------------------------------------------------------------------------
*/
static
int make_named_dtype(hid_t loc_id)
{
hsize_t dims[1] ={3};
hid_t did=-1;
hid_t aid=-1;
hid_t sid=-1;
hid_t tid=-1;
hid_t gid=-1;
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
/* Create a dataset with an anonymous committed datatype as the first thing
* h5repack sees */
if((tid = H5Tcopy(H5T_STD_I16LE)) < 0)
goto out;
if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
/* Create an attribute on that dataset that uses a committed datatype in
* a remote group */
if((gid = H5Gcreate2(loc_id, "M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Gclose(gid) < 0)
goto out;
if((gid = H5Gcreate2(loc_id, "M/M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Gclose(gid) < 0)
goto out;
if((tid = H5Tcopy(H5T_STD_I16BE)) < 0)
goto out;
if(H5Tcommit2(loc_id, "/M/M/A", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
/* Create a dataset in the remote group that uses a committed datatype in
* the root group */
if((tid = H5Tcopy(H5T_STD_I32LE)) < 0)
goto out;
if(H5Tcommit2(loc_id, "N", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "M/M/B", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
/* Create an attribute on the remote dataset that uses an anonymous
* committed datatype */
if((tid = H5Tcopy(H5T_STD_I32BE)) < 0)
goto out;
if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
/* Create another attribute that uses the same anonymous datatype */
if((aid = H5Acreate2(did, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
/* Create a dataset in the root group that uses the committed datatype in
* the root group */
if((tid = H5Topen2(loc_id, "N", H5P_DEFAULT)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "O", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
/* Create 2 attributes on the committed datatype that use that datatype */
if((aid = H5Acreate2(tid, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if((aid = H5Acreate2(tid, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
/* Close */
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Tclose(tid);
H5Aclose(aid);
H5Sclose(sid);
H5Dclose(did);
H5Gclose(gid);
} H5E_END_TRY;
return -1;
} /* end make_named_dtype() */
/*-------------------------------------------------------------------------
* Function: add_attr_with_objref
*
* Purpose:
* Create attributes with object reference to objects (dset,
* group, datatype).
*
* Note:
* this function depends on locally created objects, however can be modified
* to be independent as necessary
*
* Programmer: Jonathan Kim (March 23, 2010)
*------------------------------------------------------------------------*/
static herr_t add_attr_with_objref(hid_t file_id, hid_t obj_id)
{
int ret = SUCCEED;
int status;
/* attr obj ref */
hsize_t dim_attr_objref[1]={3};
hobj_ref_t data_attr_objref[3];
/* --------------------------------
* add attribute with obj ref type
*/
/* ref to dset */
status = H5Rcreate(&data_attr_objref[0],file_id,NAME_OBJ_DS1,H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* ref to group */
status = H5Rcreate(&data_attr_objref[1],file_id,NAME_OBJ_GRP,H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* ref to datatype */
status = H5Rcreate(&data_attr_objref[2],file_id,NAME_OBJ_NDTYPE,H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create attr with obj ref type */
status = make_attr(obj_id,1,dim_attr_objref,"Attr_OBJREF",H5T_STD_REF_OBJ,data_attr_objref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
return ret;
}
/*-------------------------------------------------------------------------
* Function: add_attr_with_regref
*
* Purpose:
* Create attributes with region reference to dset
*
* Note:
* this function depends on locally created objects, however can be modified
* to be independent as necessary
*
* Programmer: Jonathan Kim (March 23, 2010)
*------------------------------------------------------------------------*/
static herr_t add_attr_with_regref(hid_t file_id, hid_t obj_id)
{
int ret = SUCCEED;
int status;
/* attr region ref */
hid_t sid_regrefed_dset=0;
hsize_t dim_regrefed_dset[2]={3,6};
hsize_t coords_regrefed_dset[3][2] = {{0,1},{1,2},{2,3}};
hsize_t dim_attr_regref[1]= {1}; /* dim of */
hdset_reg_ref_t data_attr_regref[1];
/* -----------------------------------
* add attribute with region ref type
*/
sid_regrefed_dset = H5Screate_simple (2, dim_regrefed_dset, NULL);
if (sid_regrefed_dset < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* select elements space for reference */
status = H5Sselect_elements (sid_regrefed_dset, H5S_SELECT_SET, (size_t)3, coords_regrefed_dset[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference from elements space */
status = H5Rcreate (&data_attr_regref[0], file_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_regrefed_dset);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create attr with region ref type */
status = make_attr(obj_id,1,dim_attr_regref,"Attr_REGREF",H5T_STD_REF_DSETREG,data_attr_regref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if (sid_regrefed_dset > 0)
H5Sclose (sid_regrefed_dset);
return ret;
}
/*-------------------------------------------------------------------------
* Function: gen_refered_objs
*
* Purpose:
* Create objects (dataset, group, datatype) to be referenced
*
* Note:
* This function is to use along with gen_obj_ref() gen_region_ref()
*
* Programmer: Jonathan Kim (March 23, 2010)
*------------------------------------------------------------------------*/
static herr_t gen_refered_objs(hid_t loc_id)
{
int status;
herr_t ret = SUCCEED;
/* objects (dset, group, datatype) */
hid_t sid=0, did1=0, gid=0, tid=0;
hsize_t dims1[1]={3};
int data[3] = {10,20,30};
/* Dset2 */
hid_t sid2=0, did2=0;
hsize_t dims2[2] = {3,16};
char data2[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"};
/*-----------------------
* add short dataset
* (define NAME_OBJ_DS1)
*/
sid = H5Screate_simple(1, dims1, NULL);
if (sid < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
did1 = H5Dcreate2 (loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (did1 < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*--------------
* add group
* (define NAME_OBJ_GRP)
*/
gid = H5Gcreate2 (loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid < 0)
{
fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*----------------------
* add named datatype
* (define NAME_OBJ_NDTYPE)
*/
tid = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*--------------------------
* create long dataset
* (define NAME_OBJ_DS2)
*/
sid2 = H5Screate_simple (2, dims2, NULL);
if (sid2 < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create normal dataset which is refered */
did2 = H5Dcreate2 (loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
if (did2 < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* write values to dataset */
status = H5Dwrite (did2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if(did1 > 0)
H5Dclose(did1);
if(gid > 0)
H5Gclose(gid);
if(tid > 0)
H5Tclose(tid);
if(sid > 0)
H5Sclose(sid);
if(did2 > 0)
H5Dclose(did2);
if(sid2 > 0)
H5Sclose(sid2);
return ret;
}
/*-------------------------------------------------------------------------
* Function: gen_obj_ref
*
* Purpose:
* Generate object references to objects (dataset,group and named datatype)
*
* Note:
* copied from h5copygentest.c and upate to create named datatype
*
* Programmer: Jonathan Kim (March 18, 2010)
*------------------------------------------------------------------------*/
static herr_t gen_obj_ref(hid_t loc_id)
{
int status;
herr_t ret = SUCCEED;
hid_t sid=0, oid=0;
hsize_t dims_dset_objref[1]={3};
/* attr with int type */
hsize_t dim_attr_int[1]={2};
int data_attr_int[2] = {10,20};
/* write buffer for obj reference */
hobj_ref_t objref_buf[3];
/*---------------------------------------------------------
* create obj references to the previously created objects.
* Passing -1 as reference is an object.*/
/* obj ref to dataset */
status = H5Rcreate (&objref_buf[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* obj ref to group */
status = H5Rcreate (&objref_buf[1], loc_id, NAME_OBJ_GRP, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* obj ref to named-datatype */
status = H5Rcreate (&objref_buf[2], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*---------------------------------------------------------
* create dataset contain references
*/
sid = H5Screate_simple (1, dims_dset_objref, NULL);
if (sid < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
if (oid < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, objref_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with int type */
if (make_attr(oid,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0)
goto out;
/* add attribute with obj ref */
status = add_attr_with_objref(loc_id, oid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with region ref */
status = add_attr_with_regref(loc_id, oid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if(oid > 0)
H5Dclose(oid);
if(sid > 0)
H5Sclose(sid);
return ret;
}
/*-------------------------------------------------------------------------
* Function: gen_region_ref
*
* Purpose: Generate dataset region references
*
* Note:
* copied from h5copygentest.c
*
* Programmer: Jonathan Kim (March 18, 2010)
*------------------------------------------------------------------------*/
static herr_t gen_region_ref(hid_t loc_id)
{
int status;
herr_t ret = SUCCEED;
/* target dataset */
hid_t sid_trg=0;
hsize_t dims_trg[2] = {3,16};
/* dset with region ref type */
hid_t sid_ref=0, oid_ref=0;
/* region ref to target dataset */
hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} };
hdset_reg_ref_t rr_data[2];
hsize_t start[2] = {0,0};
hsize_t stride[2] = {2,11};
hsize_t count[2] = {2,2};
hsize_t block[2] = {1,3};
hsize_t dims1[1] = {2};
/* attr with int type */
hsize_t dim_attr_int[1]={2};
int data_attr_int[2] = {10,20};
sid_trg = H5Screate_simple (2, dims_trg, NULL);
if (sid_trg < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* select elements space for reference */
status = H5Sselect_elements (sid_trg, H5S_SELECT_SET, (size_t)4, coords[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference from elements space */
status = H5Rcreate (&rr_data[0], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* select hyperslab space for reference */
status = H5Sselect_hyperslab (sid_trg, H5S_SELECT_SET, start, stride, count, block);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference from hyperslab space */
status = H5Rcreate (&rr_data[1], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* Create dataspace. */
sid_ref = H5Screate_simple (1, dims1, NULL);
if (sid_ref < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference dataset */
oid_ref = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid_ref, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
if (oid_ref < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* write data as region references */
status = H5Dwrite (oid_ref, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with int type */
if (make_attr(oid_ref,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0)
goto out;
/* add attribute with obj ref */
status = add_attr_with_objref(loc_id, oid_ref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with region ref */
status = add_attr_with_regref(loc_id, oid_ref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if (oid_ref > 0)
H5Dclose (oid_ref);
if (sid_ref > 0)
H5Sclose (sid_ref);
if (sid_trg > 0)
H5Sclose (sid_trg);
return ret;
}
/*-------------------------------------------------------------------------
* Function: make_references
*
* Purpose: create a file with obj and region references
*
* Programmer: Jonathan Kim (March 18, 2010)
*-------------------------------------------------------------------------
*/
static herr_t make_references(hid_t loc_id)
{
herr_t ret = SUCCEED;
herr_t status;
/* add target objects */
status = gen_refered_objs(loc_id);
if (status == FAIL)
{
fprintf(stderr, "Failed to generate referenced object.\n");
ret = FAIL;
}
/* add object reference */
status = gen_obj_ref(loc_id);
if (status == FAIL)
{
fprintf(stderr, "Failed to generate object reference.\n");
ret = FAIL;
}
/* add region reference */
status = gen_region_ref(loc_id);
if (status == FAIL)
{
fprintf(stderr, "Failed to generate region reference.\n");
ret = FAIL;
}
return ret;
}
/*-------------------------------------------------------------------------
* Function: make_complex_attr_references
*
* Purpose:
* create a file with :
* 1. obj ref in attribute of compound type
* 2. region ref in attribute of compound type
* 3. obj ref in attribute of vlen type
* 4. region ref in attribute of vlen type
*
* Programmer: Jonathan (March 25, 2010)
*-------------------------------------------------------------------------
*/
/* obj dset */
#define RANK_OBJ 2
#define DIM0_OBJ 6
#define DIM1_OBJ 10
/* container dset */
#define RANK_DSET 1
#define DIM_DSET 4
/* 1. obj references in compound attr */
#define RANK_COMP_OBJREF 1
#define DIM_COMP_OBJREF 3 /* for dataset, group, datatype */
/* 2. region references in compound attr */
#define RANK_COMP_REGREF 1
#define DIM_COMP_REGREF 1 /* for element region */
/* 3. obj references in vlen attr */
#define RANK_VLEN_OBJREF 1
#define DIM_VLEN_OBJREF 3 /* for dataset, group, datatype */
#define LEN0_VLEN_OBJREF 1 /* dataset */
#define LEN1_VLEN_OBJREF 1 /* group */
#define LEN2_VLEN_OBJREF 1 /* datatype */
/* 4. region references in vlen attr */
#define RANK_VLEN_REGREF 1
#define DIM_VLEN_REGREF 1 /* for element region */
#define LEN0_VLEN_REGREF 1 /* element region */
static herr_t make_complex_attr_references(hid_t loc_id)
{
herr_t ret = SUCCEED;
herr_t status;
/*
* for objects
*/
hid_t objgid=0, objdid=0, objtid=0, objsid=0;
hsize_t obj_dims[RANK_OBJ] = {DIM0_OBJ, DIM1_OBJ};
int obj_data[DIM0_OBJ][DIM1_OBJ]=
{{ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9},
{10,11,12,13,14,15,16,17,18,19},
{20,21,22,23,24,25,26,27,28,29},
{30,31,32,33,34,35,36,37,38,39},
{40,41,42,43,44,45,46,47,48,49},
{50,51,52,53,54,55,56,57,58,59}};
/*
* group main
*/
hid_t main_gid=0;
/*
* dataset which the attribute will be attached to
*/
hsize_t main_dset_dims[RANK_DSET] = {DIM_DSET};
hid_t main_sid=0, main_did=0;
/*
* 1. obj references in compound attr
*/
hid_t comp_objref_tid=0, comp_objref_aid=0;
typedef struct comp_objref_t {
hobj_ref_t val_objref;
int val_int;
} comp_objref_t;
comp_objref_t comp_objref_data[DIM_COMP_OBJREF];
hid_t comp_objref_attr_sid=0;
hsize_t comp_objref_dim[RANK_COMP_OBJREF] = {DIM_COMP_OBJREF};
/*
* 2. region references in compound attr
*/
hid_t comp_regref_tid=0, comp_regref_aid=0;
typedef struct comp_regref_t {
hdset_reg_ref_t val_regref;
int val_int;
} comp_regref_t;
comp_regref_t comp_regref_data[DIM_COMP_REGREF];
hid_t comp_regref_attr_sid=0;
hsize_t comp_regref_dim[RANK_COMP_REGREF] = {DIM_COMP_REGREF};
hsize_t coords[4][2] = { {0,1}, {2,3}, {3,4}, {4,5} };
/*
* 3. obj references in vlen attr
*/
hid_t vlen_objref_attr_tid=0, vlen_objref_attr_sid=0;
hid_t vlen_objref_attr_id=0;
hvl_t vlen_objref_data[DIM_VLEN_OBJREF];
hsize_t vlen_objref_dims[RANK_VLEN_OBJREF] = {DIM_VLEN_OBJREF};
/*
* 4. region references in vlen attr
*/
hid_t vlen_regref_attr_tid=0, vlen_regref_attr_sid=0;
hid_t vlen_regref_attr_id=0;
hvl_t vlen_regref_data[DIM_VLEN_REGREF];
hsize_t vlen_regref_dim[RANK_VLEN_REGREF] = {DIM_VLEN_REGREF};
/* ---------------------------------------
* create objects which to be referenced
*/
/* object1 group */
objgid = H5Gcreate2(loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* object2 dataset */
objsid = H5Screate_simple(RANK_OBJ, obj_dims, NULL);
objdid = H5Dcreate2(loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, objsid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(objdid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* object3 named datatype */
objtid = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, objtid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* ---------------------------------------------
* Put testing objs in this group
* create group contain dataset with attribute and the attribute has
* compound type which contain obj and region reference */
main_gid = H5Gcreate2(loc_id, "group_main", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (main_gid < 0)
{
fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*----------------------------------------------------------
* create dataset which the attribute will be attached to
*/
main_sid = H5Screate_simple(RANK_DSET, main_dset_dims, NULL);
main_did = H5Dcreate2(main_gid, "dset_main", H5T_NATIVE_INT, main_sid, H5P_DEFAULT,H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(main_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 1. create obj references in a attribute of compound type
*/
/*
* create compound type for attribute
*/
comp_objref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_objref_t));
H5Tinsert(comp_objref_tid, "value_objref", HOFFSET(comp_objref_t, val_objref), H5T_STD_REF_OBJ);
H5Tinsert(comp_objref_tid, "value_int", HOFFSET(comp_objref_t, val_int), H5T_NATIVE_INT);
/*
* Create the object references into compound type
*/
/* references to dataset */
status = H5Rcreate (&(comp_objref_data[0].val_objref), loc_id, NAME_OBJ_DS1, H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_objref_data[0].val_int = 0;
/* references to group */
status = H5Rcreate (&(comp_objref_data[1].val_objref), loc_id, NAME_OBJ_GRP, H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_objref_data[1].val_int = 10;
/* references to datatype */
status = H5Rcreate (&(comp_objref_data[2].val_objref), loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_objref_data[2].val_int = 20;
/*
* create attribute and write the object ref
*/
comp_objref_attr_sid = H5Screate_simple (RANK_COMP_OBJREF, comp_objref_dim, NULL);
comp_objref_aid = H5Acreate2 (main_did, "Comp_OBJREF", comp_objref_tid, comp_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite (comp_objref_aid, comp_objref_tid, comp_objref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 2. create region references in attribute of compound type
*/
/*
* create compound type for attribute
*/
comp_regref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_regref_t));
H5Tinsert(comp_regref_tid, "value_regref", HOFFSET(comp_regref_t, val_regref), H5T_STD_REF_DSETREG);
H5Tinsert(comp_regref_tid, "value_int", HOFFSET(comp_regref_t, val_int), H5T_NATIVE_INT);
/*
* create the region reference
*/
status = H5Sselect_elements (objsid, H5S_SELECT_SET, (size_t)4, coords[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Rcreate (&(comp_regref_data[0].val_regref), loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_regref_data[0].val_int = 10;
/*
* create attribute and write the region ref
*/
comp_regref_attr_sid = H5Screate_simple (RANK_COMP_REGREF, comp_regref_dim, NULL);
comp_regref_aid = H5Acreate2 (main_did, "Comp_REGREF", comp_regref_tid, comp_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite (comp_regref_aid, comp_regref_tid, comp_regref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 3. create obj references in attribute of vlen type
*/
/*
* prepare vlen data
*/
vlen_objref_data[0].len = LEN0_VLEN_OBJREF;
vlen_objref_data[0].p = malloc (vlen_objref_data[0].len * sizeof(hobj_ref_t));
vlen_objref_data[1].len = LEN1_VLEN_OBJREF;
vlen_objref_data[1].p = malloc (vlen_objref_data[1].len * sizeof(hobj_ref_t));
vlen_objref_data[2].len = LEN2_VLEN_OBJREF;
vlen_objref_data[2].p = malloc (vlen_objref_data[2].len * sizeof(hobj_ref_t));
/*
* create obj references
*/
/* reference to dataset */
status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* reference to group */
status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[1].p)[0], loc_id, NAME_OBJ_GRP, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* reference to datatype */
status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[2].p)[0], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*
* create vlen type with obj reference
*/
vlen_objref_attr_tid = H5Tvlen_create (H5T_STD_REF_OBJ);
vlen_objref_attr_sid = H5Screate_simple (RANK_VLEN_OBJREF, vlen_objref_dims, NULL);
/*
* create attribute and write the object reference
*/
vlen_objref_attr_id = H5Acreate2(main_did, "Vlen_OBJREF", vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite (vlen_objref_attr_id, vlen_objref_attr_tid, vlen_objref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* close resource for vlen data */
status = H5Dvlen_reclaim (vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, vlen_objref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 4. create region references in a attribute of vlen type
*/
/*
* prepare vlen data
*/
vlen_regref_data[0].len = LEN0_VLEN_REGREF;
vlen_regref_data[0].p = malloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t));
/*
* create region reference
*/
status = H5Sselect_elements(objsid, H5S_SELECT_SET, (size_t)4, coords[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Rcreate (&((hdset_reg_ref_t*)vlen_regref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*
* create vlen type with region reference
*/
vlen_regref_attr_tid = H5Tvlen_create(H5T_STD_REF_DSETREG);
vlen_regref_attr_sid = H5Screate_simple(RANK_VLEN_REGREF, vlen_regref_dim, NULL);
/*
* create attribute and write the region reference
*/
vlen_regref_attr_id = H5Acreate2(main_did, "Vlen_REGREF", vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite(vlen_regref_attr_id, vlen_regref_attr_tid, vlen_regref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* close resource for vlen data */
status = H5Dvlen_reclaim (vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, vlen_regref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
/* release resources */
if (objgid > 0)
H5Gclose(objgid);
if (objsid > 0)
H5Sclose(objsid);
if (objdid > 0)
H5Dclose(objdid);
if (objtid > 0)
H5Tclose(objtid);
if (main_gid > 0)
H5Gclose(main_gid);
if (main_sid > 0)
H5Sclose(main_sid);
if (main_did > 0)
H5Dclose(main_did);
/* comp obj ref */
if (comp_objref_tid > 0)
H5Tclose(comp_objref_tid);
if (comp_objref_aid > 0)
H5Aclose(comp_objref_aid);
if (comp_objref_attr_sid > 0)
H5Sclose(comp_objref_attr_sid);
/* comp region ref */
if (comp_regref_tid > 0)
H5Tclose(comp_regref_tid);
if (comp_regref_aid > 0)
H5Aclose(comp_regref_aid);
if (comp_regref_attr_sid > 0)
H5Sclose(comp_regref_attr_sid);
/* vlen obj ref */
if (vlen_objref_attr_id > 0)
H5Aclose(vlen_objref_attr_id);
if (vlen_objref_attr_sid > 0)
H5Sclose(vlen_objref_attr_sid);
if (vlen_objref_attr_tid > 0)
H5Tclose(vlen_objref_attr_tid);
/* vlen region ref */
if (vlen_regref_attr_id > 0)
H5Aclose(vlen_regref_attr_id);
if (vlen_regref_attr_sid > 0)
H5Sclose(vlen_regref_attr_sid);
if (vlen_regref_attr_tid > 0)
H5Tclose(vlen_regref_attr_tid);
return ret;
}
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