mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2024-12-27 08:01:04 +08:00
Code Issues Packages Projects Releases Wiki Activity
9f430d15b0
hdf5/tools/test/h5stat/h5stat_gentest.c
Dana Robinson 187ea8a9ae
Rename HD(f)printf() to (f)printf() (#3194)
2023-06-28 08:31:32 -07:00

632 lines
20 KiB
C
Raw Blame History

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Generate the binary hdf5 files for the h5stat tests.
* Usage: just execute the program without any arguments will
* generate all the binary hdf5 files
*
* If you regenerate the test files (e.g., changing some code,
* trying it on a new platform, ...), you need to verify the correctness
* of the expected output and update the corresponding *.ddl files.
*/
#include "hdf5.h"
#include "H5private.h"
/* For gen_newgrat_file() */
#define NEWGRAT_FILE "h5stat_newgrat.h5"
#define DATASET_NAME "DATASET_NAME"
#define GROUP_NAME "GROUP"
#define ATTR_NAME "ATTR"
#define NUM_GRPS 35000
#define NUM_ATTRS 100
/* Declarations for gen_idx_file() */
#define IDX_FILE "h5stat_idx.h5"
#define DSET "dset"
#define DSET_FILTER "dset_filter"
/* For gen_threshold_file() */
#define THRESHOLD_FILE "h5stat_threshold.h5"
#define THRES_ATTR_NAME "attr"
#define THRES_ATTR_GRP_NAME "grp_attr"
#define THRES_DSET_NAME "dset"
#define THRES_NUM 10
#define THRES_NUM_25 25
/* For gen_err_refcount() */
#define ERR_REFCOUNT_FILE "h5stat_err_refcount.h5"
/*
* Generate HDF5 file with latest format with
* NUM_GRPS groups and NUM_ATTRS attributes for the dataset
*/
static herr_t
gen_newgrat_file(const char *fname)
{
hid_t fcpl = H5I_INVALID_HID; /* File creation property */
hid_t fapl = H5I_INVALID_HID; /* File access property */
hid_t fid = H5I_INVALID_HID; /* File id */
hid_t gid = H5I_INVALID_HID; /* Group id */
hid_t tid = H5I_INVALID_HID; /* Datatype id */
hid_t sid = H5I_INVALID_HID; /* Dataspace id */
hid_t attr_id = H5I_INVALID_HID; /* Attribute id */
hid_t did = H5I_INVALID_HID; /* Dataset id */
char name[30]; /* Group name */
char attrname[30]; /* Attribute name */
int i; /* Local index variable */
/* Get a copy file access property list */
if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
goto error;
/* Set to use latest library format */
if (H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
goto error;
/* Get a copy of file creation property list */
if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
goto error;
/* Set file space handling strategy */
if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, 1, (hsize_t)1) < 0)
goto error;
/* Create file */
if ((fid = H5Fcreate(fname, H5F_ACC_TRUNC, fcpl, fapl)) < 0)
goto error;
/* Create NUM_GRPS groups in the root group */
for (i = 1; i <= NUM_GRPS; i++) {
HDsnprintf(name, sizeof(name), "%s%d", GROUP_NAME, i);
if ((gid = H5Gcreate2(fid, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if (H5Gclose(gid) < 0)
goto error;
} /* end for */
/* Create a datatype to commit and use */
if ((tid = H5Tcopy(H5T_NATIVE_INT)) < 0)
goto error;
/* Create dataspace for dataset */
if ((sid = H5Screate(H5S_SCALAR)) < 0)
goto error;
/* Create dataset */
if ((did = H5Dcreate2(fid, DATASET_NAME, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create NUM_ATTRS for the dataset */
for (i = 1; i <= NUM_ATTRS; i++) {
HDsnprintf(attrname, sizeof(attrname), "%s%d", ATTR_NAME, i);
if ((attr_id = H5Acreate2(did, attrname, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if (H5Aclose(attr_id) < 0)
goto error;
} /* end for */
/* Close dataset, dataspace, datatype, file */
if (H5Pclose(fapl) < 0)
goto error;
if (H5Pclose(fcpl) < 0)
goto error;
if (H5Dclose(did) < 0)
goto error;
if (H5Tclose(tid) < 0)
goto error;
if (H5Sclose(sid) < 0)
goto error;
if (H5Fclose(fid) < 0)
goto error;
return SUCCEED;
error:
H5E_BEGIN_TRY
{
H5Pclose(fapl);
H5Pclose(fcpl);
H5Aclose(attr_id);
H5Dclose(did);
H5Tclose(tid);
H5Sclose(sid);
H5Gclose(gid);
H5Fclose(fid);
}
H5E_END_TRY
return FAIL;
} /* gen_newgrat_file() */
/*
* Generate an HDF5 file with groups, datasets, attributes for testing the options:
* -l N (--links=N): Set the threshold for # of links when printing information for small groups.
* -m N (--dims=N): Set the threshold for the # of dimension sizes when printing information for small
* datasets. -a N (--numattrs=N): Set the threshold for the # of attributes when printing information for
* small # of attributes.
*/
static herr_t
gen_threshold_file(const char *fname)
{
hid_t fid = H5I_INVALID_HID; /* File ID */
hid_t sid0 = H5I_INVALID_HID; /* Dataspace IDs */
hid_t sid1 = H5I_INVALID_HID; /* Dataspace IDs */
hid_t sid2 = H5I_INVALID_HID; /* Dataspace IDs */
hid_t sid3 = H5I_INVALID_HID; /* Dataspace IDs */
hid_t sid4 = H5I_INVALID_HID; /* Dataspace IDs */
hid_t did = H5I_INVALID_HID; /* Dataset ID */
hid_t attr_id = H5I_INVALID_HID; /* Attribute ID */
hid_t gid = H5I_INVALID_HID; /* Group ID */
hsize_t two_dims[] = {2, 5}; /* Dimension array */
hsize_t one_dims[] = {6}; /* Dimension array */
hsize_t zero_dims[] = {0}; /* Dimension array */
char name[30]; /* Name */
unsigned i; /* Local index variable */
/* Create file */
if ((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create 1-D dataspace with zero dimension size */
if ((sid0 = H5Screate_simple(1, zero_dims, NULL)) < 0)
goto error;
/* Create 1-D dataspace with non-zero dimension size*/
if ((sid1 = H5Screate_simple(1, one_dims, NULL)) < 0)
goto error;
/* Create 2-D dataspace */
if ((sid2 = H5Screate_simple(2, two_dims, NULL)) < 0)
goto error;
/* Create scalar dataspace */
if ((sid3 = H5Screate(H5S_SCALAR)) < 0)
goto error;
/* Create null dataspace */
if ((sid4 = H5Screate(H5S_NULL)) < 0)
goto error;
/* Create an attribute for the root group */
if ((attr_id = H5Acreate2(fid, "attr", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if (H5Aclose(attr_id) < 0)
goto error;
/* Create 1-D dataset with zero dimension size for the root group */
if ((did = H5Dcreate2(fid, "zero_dset", H5T_NATIVE_UCHAR, sid0, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) <
0)
goto error;
/* Create 11 attributes for the dataset */
for (i = 1; i <= (THRES_NUM + 1); i++) {
HDsnprintf(name, sizeof(name), "%s%d", THRES_ATTR_NAME, i);
if ((attr_id = H5Acreate2(did, name, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if (H5Aclose(attr_id) < 0)
goto error;
}
if (H5Dclose(did) < 0)
goto error;
/* Create dataset with scalar dataspace for the root group */
if ((did = H5Dcreate2(fid, "scalar_dset", H5T_NATIVE_UCHAR, sid3, H5P_DEFAULT, H5P_DEFAULT,
H5P_DEFAULT)) < 0)
goto error;
if (H5Dclose(did) < 0)
goto error;
/* Create dataset with null dataspace for the root group */
if ((did = H5Dcreate2(fid, "null_dset", H5T_NATIVE_UCHAR, sid4, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) <
0)
goto error;
if (H5Dclose(did) < 0)
goto error;
/* Create 2-D dataset for the root group */
if ((did = H5Dcreate2(fid, "dset", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create 10 attributes for the 2-D dataset */
for (i = 1; i <= THRES_NUM; i++) {
HDsnprintf(name, sizeof(name), "%s%d", THRES_ATTR_NAME, i);
if ((attr_id = H5Acreate2(did, name, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if (H5Aclose(attr_id) < 0)
goto error;
}
if (H5Dclose(did) < 0)
goto error;
/* Create first group */
if ((gid = H5Gcreate2(fid, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create an attribute for the group */
if ((attr_id = H5Acreate2(gid, "ATTR", H5T_NATIVE_INT, sid3, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Close attribute */
if (H5Aclose(attr_id) < 0)
goto error;
/* Create 10 1-D datasets with non-zero dimension size for the group */
for (i = 1; i <= THRES_NUM; i++) {
/* set up dataset name */
HDsnprintf(name, sizeof(name), "%s%d", THRES_DSET_NAME, i);
/* Create the dataset */
if ((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Close the dataset */
if (H5Dclose(did) < 0)
goto error;
}
/* Close the group */
if (H5Gclose(gid) < 0)
goto error;
/* Create second group */
if ((gid = H5Gcreate2(fid, "group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create 25 attributes for the group */
for (i = 1; i <= THRES_NUM_25; i++) {
/* Set up attribute name */
HDsnprintf(name, sizeof(name), "%s%d", THRES_ATTR_GRP_NAME, i);
/* Create the attribute */
if ((attr_id = H5Acreate2(gid, name, H5T_NATIVE_INT, sid2, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Close the attribute */
if (H5Aclose(attr_id) < 0)
goto error;
}
/* Close the group */
if (H5Gclose(gid) < 0)
goto error;
/* Create third group */
if ((gid = H5Gcreate2(fid, "group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create 9 1-D datasets with non-zero dimension size for the group */
for (i = 1; i < THRES_NUM; i++) {
/* set up dataset name */
HDsnprintf(name, sizeof(name), "%s%d", THRES_DSET_NAME, i);
/* Create the dataset */
if ((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Close the dataset */
if (H5Dclose(did) < 0)
goto error;
}
if (H5Gclose(gid) < 0)
goto error;
if (H5Sclose(sid0) < 0)
goto error;
if (H5Sclose(sid1) < 0)
goto error;
if (H5Sclose(sid2) < 0)
goto error;
if (H5Sclose(sid3) < 0)
goto error;
if (H5Sclose(sid4) < 0)
goto error;
if (H5Fclose(fid) < 0)
goto error;
return SUCCEED;
error:
H5E_BEGIN_TRY
{
H5Gclose(gid);
H5Aclose(attr_id);
H5Dclose(did);
H5Sclose(sid0);
H5Sclose(sid1);
H5Sclose(sid2);
H5Sclose(sid3);
H5Sclose(sid4);
H5Fclose(fid);
}
H5E_END_TRY
return FAIL;
} /* gen_threshold_file() */
/*
* Function: gen_idx_file
*
* Purpose: Create a file with datasets that use Fixed Array indexing:
* one dataset: fixed dimension, chunked layout, w/o filters
* one dataset: fixed dimension, chunked layout, w/ filters
*
*/
static herr_t
gen_idx_file(const char *fname)
{
hid_t fapl = H5I_INVALID_HID; /* file access property id */
hid_t fid = H5I_INVALID_HID; /* file id */
hid_t sid = H5I_INVALID_HID; /* space id */
hid_t dcpl = H5I_INVALID_HID; /* dataset creation property id */
hid_t did = H5I_INVALID_HID; /* dataset id */
#if defined(H5_HAVE_FILTER_DEFLATE)
hid_t did2 = H5I_INVALID_HID; /* dataset id (compressed) */
#endif
hsize_t dims[1] = {10}; /* dataset dimension */
hsize_t c_dims[1] = {2}; /* chunk dimension */
int i; /* local index variable */
int buf[10]; /* data buffer */
/* Get a copy of the file access property */
if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
goto error;
/* Set the "use the latest format" bounds for creating objects in the file */
if (H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
goto error;
/* Create file */
if ((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
goto error;
/* Create data */
for (i = 0; i < 10; i++)
buf[i] = i;
/* Set chunk */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto error;
if (H5Pset_chunk(dcpl, 1, c_dims) < 0)
goto error;
/* Create a 1D dataset */
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto error;
if ((did = H5Dcreate2(fid, DSET, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto error;
/* Write to the dataset */
if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto error;
#if defined(H5_HAVE_FILTER_DEFLATE)
/* set deflate data */
if (H5Pset_deflate(dcpl, 9) < 0)
goto error;
/* Create and write the dataset */
if ((did2 = H5Dcreate2(fid, DSET_FILTER, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto error;
if (H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto error;
/* Close the dataset */
if (H5Dclose(did2) < 0)
goto error;
#endif
/* closing: dataspace, dataset, file */
if (H5Pclose(fapl) < 0)
goto error;
if (H5Pclose(dcpl) < 0)
goto error;
if (H5Sclose(sid) < 0)
goto error;
if (H5Dclose(did) < 0)
goto error;
if (H5Fclose(fid) < 0)
goto error;
return SUCCEED;
error:
H5E_BEGIN_TRY
{
H5Pclose(fapl);
H5Pclose(dcpl);
H5Sclose(sid);
H5Dclose(did);
H5Fclose(fid);
#if defined(H5_HAVE_FILTER_DEFLATE)
H5Dclose(did2);
#endif
}
H5E_END_TRY
return FAIL;
} /* gen_idx_file() */
/*
* Function: gen_err_refcount_file
*
* Purpose: Create a file with a refcount message ID.
* Then a refcount message ID is written to a
* message in a version 1 object header.
* This will trigger the error as a version 1
* object header does not support a refcount message.
* This is to verify HDFFV-10333 that h5stat will exit
* gracefully when encountered error similar to
* H5O_refcount_decode in the jira issue.
*
*/
static herr_t
gen_err_refcount(const char *fname)
{
hid_t fid = H5I_INVALID_HID; /* File identifier */
hid_t sid = H5I_INVALID_HID; /* Dataspace message */
hid_t did = H5I_INVALID_HID; /* Dataset identifier */
hid_t gid = H5I_INVALID_HID; /* Group identifier */
hid_t aid1 = H5I_INVALID_HID; /* Attribute identifier */
hid_t aid2 = H5I_INVALID_HID; /* Attribute identifier */
hid_t tid = H5I_INVALID_HID; /* Datatype identifier */
int i, n; /* Local index variables */
int buf[10]; /* Data buffer */
hsize_t dims[1]; /* Dimension size */
int fd = -1; /* File descriptor */
unsigned short val = 22; /* The refcount message ID */
/* Initialize data buffer */
n = 0;
for (i = 0; i < 10; i++)
buf[i] = n++;
/* Create the file */
if ((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create a group */
if ((gid = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Create a committed datatype in the group */
if ((tid = H5Tcopy(H5T_NATIVE_INT)) < 0)
goto error;
if (H5Tcommit2(gid, "dtype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto error;
/* Create the dataspace */
dims[0] = 10;
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto error;
/* Create a dataset with the committed datatype in the file */
if ((did = H5Dcreate2(fid, "dset", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Write to the dataset */
if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto error;
/* Attach an attribute with the committed datatype to the group */
if ((aid1 = H5Acreate2(gid, "attr", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Attach an attribute with the committed datatype to the dataset */
if ((aid2 = H5Acreate2(did, "attr", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
/* Closing */
if (H5Aclose(aid1) < 0)
goto error;
if (H5Aclose(aid2) < 0)
goto error;
if (H5Sclose(sid) < 0)
goto error;
if (H5Dclose(did) < 0)
goto error;
if (H5Gclose(gid) < 0)
goto error;
if (H5Tclose(tid) < 0)
goto error;
/* Be sure to close this before opening the file again via open(), below,
* or you'll possibly trip over the file locking.
*/
if (H5Fclose(fid) < 0)
goto error;
/* This section of code will write a refcount message ID to a message in the
version 1 object header which does not support a refcount message */
/* Offset of the message ID to modify is as follows: */
/* 4520: the offset of the object header containing the attribute message
with the committed datatype */
/* 24: the offset in the object header containing the version of the
attribute message */
if ((fd = HDopen(fname, O_RDWR, 0633)) < 0)
goto error;
if (HDlseek(fd, 4520 + 24, SEEK_SET) < 0)
goto error;
if (HDwrite(fd, &val, 2) < 0)
goto error;
if (HDclose(fd) < 0)
goto error;
return SUCCEED;
error:
H5E_BEGIN_TRY
{
H5Gclose(gid);
H5Dclose(did);
H5Tclose(tid);
H5Sclose(sid);
H5Aclose(aid1);
H5Aclose(aid2);
H5Fclose(fid);
}
H5E_END_TRY
if (fd >= 0)
HDclose(fd);
return FAIL;
} /* gen_err_refcount() */
/*
* The following two test files are generated with older versions
* of the library for HDFFV-10333. They are used for testing in
* testh5stat.sh.in.
*
* (1) h5stat_err_old_layout.h5
* This file is generated with the 1.6 library so that a file
* with a version 2 layout message is created.
* Then a "0" is written to the "dimension" field in the layout
* message to trigger the error.
* This is to verify HDFFV-10333 that h5stat will exit gracefully
* when encountered error similar to H5O__layout_decode in the
* jira issue.
*
* (2) h5stat_err_old_fill.h5
* This file is generated with the 1.4 library so that a file
* with an old fill value message is created.
* Then an illegal size is written to the "size" fild in the
* fill value message to trigger the error.
* This is to verify HDFFV-10333 that h5stat will exit gracefully
* when encountered error similar to H5O_fill_old_decode in the
* jira issue.
*/
int
main(void)
{
if (gen_newgrat_file(NEWGRAT_FILE) < 0)
goto error;
if (gen_threshold_file(THRESHOLD_FILE) < 0)
goto error;
/* Generate an HDF file to test for datasets with Fixed Array indexing */
if (gen_idx_file(IDX_FILE) < 0)
goto error;
/* Generate a file with a refcount message ID */
if (gen_err_refcount(ERR_REFCOUNT_FILE) < 0)
goto error;
return EXIT_SUCCESS;
error:
fprintf(stderr, "h5stat test generator FAILED\n");
return EXIT_FAILURE;
}
Reference in New Issue View Git Blame Copy Permalink