mirror of
https://github.com/HDFGroup/hdf5.git
synced 2025-01-06 14:56:51 +08:00
00b9f24d9b
Fix for HDFFV-7840 h5repack: memory leak over one of the h5diff test file Description: Turned out that there were two causes of memory leaks. 1. for handling variable length string in attribute. 2. for handling compound type with non-reference members. The first issue is fixed in copy_attr() which is updated to use h5tools_detect_vlen to take care of vlen string as well as vlen data. The second is fixed in copy_refs_attr() of compound handling code. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE), Cmake (jam)
820 lines
22 KiB
Bash
Executable File
820 lines
22 KiB
Bash
Executable File
#! /bin/sh
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#
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# Copyright by The HDF Group.
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# Copyright by the Board of Trustees of the University of Illinois.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the files COPYING and Copyright.html. COPYING can be found at the root
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# of the source code distribution tree; Copyright.html can be found at the
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# root level of an installed copy of the electronic HDF5 document set and
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# is linked from the top-level documents page. It can also be found at
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# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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# access to either file, you may request a copy from help@hdfgroup.org.
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#
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# Tests for the h5repack tool
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#
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# Modification:
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# Pedro Vicente Nunes, 11/15/2006
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# Added $FILEN variables for file names
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#
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USE_FILTER_SZIP="@USE_FILTER_SZIP@"
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USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
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USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
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USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
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USE_FILTER_NBIT="@USE_FILTER_NBIT@"
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USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
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TESTNAME=h5repack
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EXIT_SUCCESS=0
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EXIT_FAILURE=1
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H5REPACK=h5repack # The tool name
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H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary
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H5DIFF=../h5diff/h5diff # The h5diff tool name
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H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
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H5DUMP=../h5dump/h5dump # The h5dump tool name
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H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary
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GREP='grep'
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CP='cp'
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H5DETECTSZIP=testh5repack_detect_szip
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H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP
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nerrors=0
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verbose=yes
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# The build (current) directory might be different than the source directory.
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#
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if test -z "$srcdir"; then
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srcdir=.
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fi
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# source dirs
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SRC_TOOLS="$srcdir/.."
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SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
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# testfiles source dirs for tools
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SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
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SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
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SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
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SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
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SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
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SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
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SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
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SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
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TESTDIR=./testfiles
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test -d $TESTDIR || mkdir $TESTDIR
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######################################################################
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# test files
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# --------------------------------------------------------------------
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# All the test files copy from source directory to test directory
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# NOTE: Keep this framework to add/remove test files.
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# Any test files from other tools can be used in this framework.
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# This list are also used for checking exist.
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# Comment '#' without space can be used.
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# --------------------------------------------------------------------
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LIST_HDF5_TEST_FILES="
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$SRC_H5REPACK_TESTFILES/h5repack_attr.h5
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$SRC_H5REPACK_TESTFILES/h5repack_attr_refs.h5
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$SRC_H5REPACK_TESTFILES/h5repack_deflate.h5
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$SRC_H5REPACK_TESTFILES/h5repack_early.h5
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$SRC_H5REPACK_TESTFILES/h5repack_ext.h5
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$SRC_H5REPACK_TESTFILES/h5repack_fill.h5
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$SRC_H5REPACK_TESTFILES/h5repack_filters.h5
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$SRC_H5REPACK_TESTFILES/h5repack_fletcher.h5
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$SRC_H5REPACK_TESTFILES/h5repack_hlink.h5
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$SRC_H5REPACK_TESTFILES/h5repack_layout.h5
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$SRC_H5REPACK_TESTFILES/h5repack_layouto.h5
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$SRC_H5REPACK_TESTFILES/h5repack_layout2.h5
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$SRC_H5REPACK_TESTFILES/h5repack_named_dtypes.h5
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$SRC_H5REPACK_TESTFILES/h5repack_nbit.h5
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$SRC_H5REPACK_TESTFILES/h5repack_objs.h5
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$SRC_H5REPACK_TESTFILES/h5repack_refs.h5
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$SRC_H5REPACK_TESTFILES/h5repack_shuffle.h5
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$SRC_H5REPACK_TESTFILES/h5repack_soffset.h5
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$SRC_H5REPACK_TESTFILES/h5repack_szip.h5
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$SRC_H5DIFF_TESTFILES/h5diff_attr1.h5
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$SRC_TOOLS_TESTFILES/tfamily00000.h5
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$SRC_TOOLS_TESTFILES/tfamily00001.h5
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$SRC_TOOLS_TESTFILES/tfamily00002.h5
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$SRC_TOOLS_TESTFILES/tfamily00003.h5
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$SRC_TOOLS_TESTFILES/tfamily00004.h5
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$SRC_TOOLS_TESTFILES/tfamily00005.h5
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$SRC_TOOLS_TESTFILES/tfamily00006.h5
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$SRC_TOOLS_TESTFILES/tfamily00007.h5
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$SRC_TOOLS_TESTFILES/tfamily00008.h5
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$SRC_TOOLS_TESTFILES/tfamily00009.h5
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$SRC_TOOLS_TESTFILES/tfamily00010.h5
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"
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LIST_OTHER_TEST_FILES="
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$SRC_H5REPACK_TESTFILES/h5repack_ext.bin
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$SRC_H5REPACK_TESTFILES/ublock.bin
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$SRC_H5REPACK_TESTFILES/h5repack.info
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$SRC_TOOLS_TESTFILES/h5repack_filters.h5.ddl
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"
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#
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# copy test files and expected output files from source dirs to test dir
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#
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COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
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COPY_TESTFILES_TO_TESTDIR()
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{
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# copy test files. Used -f to make sure get a new copy
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for tstfile in $COPY_TESTFILES
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do
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# ignore '#' comment
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echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
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RET=$?
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if [ $RET -eq 1 ]; then
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if [ -a $tstfile ]; then
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$CP -f $tstfile $TESTDIR
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else
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echo "Error: FAILED to copy $tstfile"
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echo " $tstfile doesn't exist!"
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exit $EXIT_FAILURE
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fi
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fi
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done
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}
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Testing".
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#
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TESTING() {
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SPACES=" "
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echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Verifying".
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#
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VERIFY() {
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SPACES=" "
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echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Print a message that a test has been skipped (because a required filter
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# was unavailable)
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SKIP() {
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TESTING $H5REPACK $@
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echo " -SKIP-"
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}
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# Call the h5diff tool
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#
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DIFFTEST()
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{
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VERIFY $@
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$RUNSERIAL $H5DIFF_BIN -q "$@"
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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fi
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}
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# Call h5repack
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#
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# call TOOLTEST_MAIN and delete $output file
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TOOLTEST()
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{
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echo $@
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TOOLTEST_MAIN $@
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outfile=$TESTDIR/out.$1
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rm -f $outfile
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}
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# TOOLTEST main function, doesn't delete $output file
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TOOLTEST_MAIN()
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{
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# Run test.
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TESTING $H5REPACK $@
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infile=$TESTDIR/$1
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outfile=$TESTDIR/out.$1
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shift
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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}
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#------------------------------------------
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# Verifying layouts of a dataset
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VERIFY_LAYOUT_DSET()
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{
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outfile=$TESTDIR/out.$1
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layoutfile=$TESTDIR/layout.$1
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dset=$2
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expectlayout=$3
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#---------------------------------
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# check the layout from a dataset
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VERIFY "Layout"
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$RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile
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$GREP $expectlayout $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " PASSED"
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else
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echo " FAILED"
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fi
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# clean up tmp files
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rm -f $outfile
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rm -f $layoutfile
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}
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#----------------------------------------
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# Verifying layouts from entire file
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VERIFY_LAYOUT_ALL()
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{
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outfile=$TESTDIR/out.$1
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layoutfile=$TESTDIR/layout.$1
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expectlayout=$2
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#---------------------------------
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# check the layout from a dataset
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# check if the other layouts still exsit
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VERIFY "Layout "
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# if CONTIGUOUS
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if [ $expectlayout = "CONTIGUOUS" ]; then
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$RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
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$GREP "COMPACT" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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else
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$GREP "CHUNKED" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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else
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echo " PASSED"
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fi
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fi
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else
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# if COMPACT
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if [ $expectlayout = "COMPACT" ]; then
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$RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
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$GREP "CHUNKED" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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else
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$GREP "CONTIGUOUS" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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else
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echo " PASSED"
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fi
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fi
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else
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# if CHUNKED
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if [ $expectlayout = "CHUNKED" ]; then
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$RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
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$GREP "CONTIGUOUS" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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else
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$GREP "COMPACT" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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else
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echo " PASSED"
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fi
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fi
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fi
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fi
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fi
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# clean up tmp files
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rm -f $outfile
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rm -f $layoutfile
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}
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# same as TOOLTEST, but it uses the old syntax -i input_file -o output_file
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#
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TOOLTEST0()
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{
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# Run test.
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TESTING $H5REPACK $@
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infile=$TESTDIR/$1
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outfile=$TESTDIR/out.$1
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shift
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$RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@"
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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rm -f $outfile
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}
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# same as TOOLTEST, but it uses without -i -o options
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# used to test the family driver, where these files reside
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#
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TOOLTEST1()
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{
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# Run test.
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TESTING $H5REPACK $@
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infile=$TESTDIR/$1
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outfile=$TESTDIR/out.$1
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shift
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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rm -f $outfile
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}
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# Call h5repack and compare output to a text file for -v option
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#
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TOOLTESTV()
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{
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# Run test.
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TESTING $H5REPACK $@
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expect="$TESTDIR/$1.ddl"
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actual="$TESTDIR/`basename $1 .ddl`.out"
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actual_err="$TESTDIR/`basename $1 .ddl`.err"
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infile=$TESTDIR/$1
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outfile=$TESTDIR/out.$1
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shift
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile >$actual 2>$actual_err
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cp $actual $actual_sav
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STDOUT_FILTER $actual
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cat $actual_err >> $actual
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if cmp -s $expect $actual; then
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echo " PASSED"
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else
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echo "*FAILED*"
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echo " Expected result (*.ddl) differs from actual result (*.out)"
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
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fi
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rm -f $actual $actual_err $actual_sav
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}
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# This is different from $srcdir/../../bin/output_filter.sh
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STDOUT_FILTER() {
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result_file=$1
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tmp_file=/tmp/h5test_tmp_$$
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# Filter name of files.
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cp $result_file $tmp_file
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sed -e '/^Opening file/d' -e '/^Making file/d' \
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< $tmp_file > $result_file
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# cleanup
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rm -f $tmp_file
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}
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#
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# The tests
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# We use the files generated by h5repacktst
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# Each run generates "<file>.out.h5" and the tool h5diff is used to
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# compare the input and output files
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#
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# the tests are the same as the program h5repacktst, but run from the CLI
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#
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# See which filters are usable (and skip tests for filters we
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# don't have). Do this by searching H5pubconf.h to see which
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# filters are defined.
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# detect whether the encoder is present.
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USE_FILTER_SZIP_ENCODER="no";
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if test $USE_FILTER_SZIP = "yes"; then
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USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
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fi
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##############################################################################
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### T H E T E S T S
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##############################################################################
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# prepare for test
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COPY_TESTFILES_TO_TESTDIR
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# copy files (these files have no filters)
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TOOLTEST h5repack_fill.h5
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TOOLTEST h5repack_objs.h5
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TOOLTEST h5repack_attr.h5
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TOOLTEST h5repack_hlink.h5
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TOOLTEST h5repack_layout.h5
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TOOLTEST h5repack_early.h5
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# use h5repack_layout.h5 to write some filters (this file has no filters)
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# gzip with individual object
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arg="h5repack_layout.h5 -f dset1:GZIP=1 -l dset1:CHUNK=20x10"
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if test $USE_FILTER_DEFLATE != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# gzip for all
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arg="h5repack_layout.h5 -f GZIP=1"
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if test $USE_FILTER_DEFLATE != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# szip with individual object
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arg="h5repack_layout.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10"
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if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# szip for all
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arg="h5repack_layout.h5 -f SZIP=8,NN"
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if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# shuffle with individual object
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arg="h5repack_layout.h5 -f dset2:SHUF -l dset2:CHUNK=20x10"
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if test $USE_FILTER_SHUFFLE != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# shuffle for all
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arg="h5repack_layout.h5 -f SHUF"
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if test $USE_FILTER_SHUFFLE != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# fletcher32 with individual object
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arg="h5repack_layout.h5 -f dset2:FLET -l dset2:CHUNK=20x10"
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if test $USE_FILTER_FLETCHER32 != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# fletcher32 for all
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arg="h5repack_layout.h5 -f FLET"
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if test $USE_FILTER_FLETCHER32 != "yes" ; then
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SKIP $arg
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else
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TOOLTEST $arg
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fi
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# all filters
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arg="h5repack_layout.h5 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# verbose gzip with individual object
|
|
arg="h5repack_filters.h5 -v -f /dset_deflate:GZIP=9"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
###########################################################
|
|
# the following tests assume the input files have filters
|
|
###########################################################
|
|
|
|
# szip copy
|
|
arg="h5repack_szip.h5"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# szip remove
|
|
arg="h5repack_szip.h5 --filter=dset_szip:NONE"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# deflate copy
|
|
arg="h5repack_deflate.h5"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# deflate remove
|
|
arg="h5repack_deflate.h5 -f dset_deflate:NONE"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# shuffle copy
|
|
arg="h5repack_shuffle.h5"
|
|
if test $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# shuffle remove
|
|
arg="h5repack_shuffle.h5 -f dset_shuffle:NONE"
|
|
if test $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# fletcher32 copy
|
|
arg="h5repack_fletcher.h5"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# fletcher32 remove
|
|
arg="h5repack_fletcher.h5 -f dset_fletcher32:NONE"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# nbit copy
|
|
arg="h5repack_nbit.h5"
|
|
if test $USE_FILTER_NBIT != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# nbit remove
|
|
arg="h5repack_nbit.h5 -f dset_nbit:NONE"
|
|
if test $USE_FILTER_NBIT != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# nbit add
|
|
arg="h5repack_nbit.h5 -f dset_int31:NBIT"
|
|
if test $USE_FILTER_NBIT != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# scaleoffset copy
|
|
arg="h5repack_soffset.h5"
|
|
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# scaleoffset add
|
|
arg="h5repack_soffset.h5 -f dset_none:SOFF=31,IN"
|
|
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# scaleoffset remove
|
|
arg="h5repack_soffset.h5 -f dset_scaleoffset:NONE"
|
|
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# remove all filters
|
|
arg="h5repack_filters.h5 -f NONE"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
#filter conversions
|
|
|
|
arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
arg="h5repack_szip.h5 -f dset_szip:GZIP=1"
|
|
if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
|
|
#limit
|
|
arg="h5repack_layout.h5 -f GZIP=1 -m 1024"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
#file
|
|
arg="h5repack_layout.h5 -e $TESTDIR/h5repack.info"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
#########################################################
|
|
# layout options (these files have no filters)
|
|
#########################################################
|
|
TOOLTEST_MAIN h5repack_layout.h5 --layout dset2:CHUNK=20x10
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 CHUNKED
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l CHUNK=20x10
|
|
VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset2:CONTI
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 CONTIGUOUS
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l CONTI
|
|
VERIFY_LAYOUT_ALL h5repack_layout.h5 CONTIGUOUS
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset2:COMPA
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 COMPACT
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l COMPA
|
|
VERIFY_LAYOUT_ALL h5repack_layout.h5 COMPACT
|
|
|
|
################################################################
|
|
# layout conversions (file has no filters)
|
|
###############################################################
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:CONTI
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact CONTIGUOUS
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:CHUNK=2x5
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact CHUNKED
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:COMPA
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact COMPACT
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:COMPA
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous COMPACT
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:CHUNK=3x6
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous CHUNKED
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:CONTI
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous CONTIGUOUS
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:COMPA
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk COMPACT
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:CONTI
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk CONTIGUOUS
|
|
|
|
TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:CHUNK=18x13
|
|
VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk CHUNKED
|
|
|
|
# test convert small size dataset ( < 1k) to compact layout without -m
|
|
TOOLTEST_MAIN h5repack_layout2.h5 -l contig_small:COMPA
|
|
VERIFY_LAYOUT_DSET h5repack_layout2.h5 contig_small COMPACT
|
|
|
|
TOOLTEST_MAIN h5repack_layout2.h5 -l chunked_small_fixed:COMPA
|
|
VERIFY_LAYOUT_DSET h5repack_layout2.h5 chunked_small_fixed COMPACT
|
|
|
|
# Native option
|
|
# Do not use FILE1, as the named dtype will be converted to native, and h5diff will
|
|
# report a difference.
|
|
TOOLTEST h5repack_fill.h5 -n
|
|
TOOLTEST h5repack_attr.h5 -n
|
|
|
|
|
|
# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters)
|
|
arg="h5repack_layout.h5 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST_MAIN $arg
|
|
VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED
|
|
fi
|
|
|
|
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
|
|
arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST_MAIN $arg
|
|
VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED
|
|
fi
|
|
|
|
# several global filters
|
|
|
|
arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF"
|
|
if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST $arg
|
|
fi
|
|
|
|
# syntax of -i infile -o outfile
|
|
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
|
|
arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST0 $arg
|
|
fi
|
|
|
|
# add a userblock to file
|
|
arg="h5repack_objs.h5 -u ublock.bin -b 2048"
|
|
TOOLTEST $arg
|
|
|
|
# add alignment
|
|
arg="h5repack_objs.h5 -t 1 -a 1 "
|
|
TOOLTEST $arg
|
|
|
|
# Check repacking file with old version of layout message (should get upgraded
|
|
# to new version and be readable, etc.)
|
|
TOOLTEST h5repack_layouto.h5
|
|
|
|
# test for datum size > H5TOOLS_MALLOCSIZE
|
|
TOOLTEST h5repack_objs.h5 -f GZIP=1
|
|
|
|
# Check repacking file with committed datatypes in odd configurations
|
|
TOOLTEST h5repack_named_dtypes.h5
|
|
|
|
# tests family driver (file is located in common testfiles folder, uses TOOLTEST1
|
|
TOOLTEST1 tfamily%05d.h5
|
|
|
|
# test various references (bug 1814 and 1726)
|
|
TOOLTEST h5repack_refs.h5
|
|
|
|
# test attribute with various references (bug1797 / HDFFV-5932)
|
|
# the references in attribute of compund or vlen datatype
|
|
TOOLTEST h5repack_attr_refs.h5
|
|
|
|
|
|
# Add test for memory leak in attirbute. This test is verified by CTEST.
|
|
# 1. leak from vlen string
|
|
# 2. leak from compound type without reference member
|
|
# (HDFFV-7840, )
|
|
# Note: this test is experimental for sharing test file among tools
|
|
TOOLTEST h5diff_attr1.h5
|
|
|
|
if test $nerrors -eq 0 ; then
|
|
echo "All $TESTNAME tests passed."
|
|
exit $EXIT_SUCCESS
|
|
else
|
|
echo "$TESTNAME tests failed with $nerrors errors."
|
|
exit $EXIT_FAILURE
|
|
fi
|
|
|