hdf5/tools/h5diff/h5diff_common.c
Pedro Vicente Nunes 9d94440384 [svn-r12815]
1) added a new parameter to the h5diff function diff_array that contains
the beginning position of the hyperslab, so that the total position in
the array is printed correctly when reading by hyperslabs.
2) added a new test to h5diff  that reads and diffs by hyperslabs. The
test reads a 1GB dataset, from which a 1KB hyperslab was written with
differences .
3) added the generation of 2 files to the generator program to test the
h5diff hyperslab read.
4) changed the h5diff binary pre-generated file names to be more
descriptive (e.g, instead of file1.h5, made it h5diff_basic1.h5)
5) changed the name of the h5repack options text file to info.h5repack
2006-10-25 15:38:28 -05:00

378 lines
10 KiB
C

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <stdlib.h>
#include <string.h>
#include "h5diff.h"
#include "h5diff_common.h"
/*-------------------------------------------------------------------------
* Function: parse_input
*
* Purpose: parse command line input
*
*-------------------------------------------------------------------------
*/
void parse_input(int argc, const char* argv[], const char** fname1, const char** fname2,
const char** objname1, const char** objname2, diff_opt_t* options)
{
int i;
const char *s = NULL;
/* process the command-line */
memset(options, 0, sizeof (diff_opt_t));
/*-------------------------------------------------------------------------
* initial check of command line options
*-------------------------------------------------------------------------
*/
if ( argc==2 && (strcmp("-h",argv[1])==0) )
usage();
if ( argc<3 )
{
printf("Number of arguments is only %d\n", argc );
usage();
}
/*-------------------------------------------------------------------------
* file names are first
*-------------------------------------------------------------------------
*/
if ( argc>=3 )
{
*fname1 = argv[1];
*fname2 = argv[2];
}
/*-------------------------------------------------------------------------
* parse command line options
*-------------------------------------------------------------------------
*/
for (i=3; i<argc ; i++)
{
/* get the single-letter switches */
if ( '-'==argv[i][0] )
{
for (s=argv[i]+1; *s; s++)
{
switch (*s) {
default:
printf("-%s is an invalid option\n", s );
usage();
break;
case 'h':
usage();
break;
case 'v':
options->m_verbose = 1;
break;
case 'q':
/* use quiet mode; supress the message "0 differences found" */
options->m_quiet = 1;
break;
case 'r':
options->m_report = 1;
break;
case 'd':
/* if it is not another option */
if ( i<argc-1 &&'-' != argv[i+1][0] )
{
options->d=1;
if ( check_f_input(argv[i+1])==-1)
{
printf("<-d %s> is not a valid option\n", argv[i+1] );
usage();
}
options->delta = (float) atof(argv[i+1]);
i++; /* go to next */
}
else
{
printf("Not a valid -d option\n");
usage();
}
break;
case 'p':
if ( i<argc-1 &&'-' !=argv[i+1][0] )
{
options->p=1;
if ( check_f_input(argv[i+1])==-1)
{
printf("<-p %s> is not a valid option\n", argv[i+1] );
usage();
}
options->percent = (float) atof(argv[i+1]);
i++; /* go to next */
}
else
{
printf("Not a valid -p option\n");
usage();
}
break;
case 'n':
if ( i<argc-1 && '-' !=argv[i+1][0] )
{
options->n=1;
if ( check_n_input(argv[i+1])==-1)
{
printf("<-n %s> is not a valid option\n", argv[i+1] );
usage();
}
options->count = atol(argv[i+1]);
i++; /* go to next */
}
else
{
printf("Not a valid -n option\n");
usage();
}
break;
} /*switch*/
} /*for*/
} /*if*/
else /* not single-letter switches */
{
/* check if it is not a -d, -p parameter */
if ( '-'==argv[i-1][0] && ('d'==argv[i-1][1] ||'p'==argv[i-1][1] ))
continue;
else
{
if ( *objname1==NULL )
*objname1 = argv[i];
if ( *objname2==NULL )
{
/* check if we have a second object name */
if ( i+1<argc && '-' !=argv[i+1][0] ) {
/* yes */
*objname2 = argv[i+1];
i++; /* go to next */
}
else
/* no */
*objname2 = *objname1;
} /*objname2*/
} /*else*/
} /*else*/
}/*for*/
}
/*-------------------------------------------------------------------------
* Function: print_results
*
* Purpose: print several information messages
*
*-------------------------------------------------------------------------
*/
void print_results(diff_opt_t* options)
{
if (options->m_quiet || options->err_stat)
return;
if (options->cmn_objs==0)
{
printf("No common objects found. Files are not comparable.\n");
if (!options->m_verbose)
printf("Use -v for a list of objects.\n");
}
if (options->not_cmp==1)
{
printf("--------------------------------\n");
printf("Some objects are not comparable\n");
printf("--------------------------------\n");
if (!options->m_verbose)
printf("Use -v for a list of objects.\n");
}
}
/*-------------------------------------------------------------------------
* Function: check_n_input
*
* Purpose: check for valid input
*
* Return: 1 for ok, -1 for fail
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: May 9, 2003
*
* Comments:
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int check_n_input( const char *str )
{
unsigned i;
char c;
for ( i = 0; i < strlen(str); i++)
{
c = str[i];
if ( i==0 )
{
if ( c < 49 || c > 57 ) /* ascii values between 1 and 9 */
return -1;
}
else
if ( c < 48 || c > 57 ) /* 0 also */
return -1;
}
return 1;
}
/*-------------------------------------------------------------------------
* Function: check_f_input
*
* Purpose: check for a valid floating point input
*
* Return: 1 for ok, -1 for fail
*
* Date: May 9, 2003
*
* Comments:
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int check_f_input( const char *str )
{
double x;
/*
the atof return value on a hexadecimal input is different
on some systems; we do a character check for this
*/
if (strlen(str)>2 && str[0]=='0' && str[1]=='x')
return -1;
x=atof(str);
if (x==0)
return -1;
return 1;
}
/*-------------------------------------------------------------------------
* Function: usage
*
* Purpose: print a usage message
*
* Return: void
*
*-------------------------------------------------------------------------
*/
void usage(void)
{
printf("usage: h5diff file1 file2 [OPTIONS] [obj1[obj2]] \n");
printf("\n");
printf("file1 File name of the first HDF5 file\n");
printf("file2 File name of the second HDF5 file\n");
printf("[obj1] Name of an HDF5 object, in absolute path\n");
printf("[obj2] Name of an HDF5 object, in absolute path\n");
printf("[OPTIONS] are:\n");
printf("[-h] Print out this information\n");
printf("[-r] Report mode. Print the differences\n");
printf("[-v] Verbose mode. Print the differences, list of objects, warnings\n");
printf("[-q] Quiet mode. Do not do output\n");
printf("[-n count] Print difference up to count number\n");
printf("[-d delta] Print difference when it is greater than limit delta\n");
printf("[-p relative] Print difference when it is greater than a relative limit\n");
printf("\n");
printf("Items in [] are optional\n");
printf("[obj1] and [obj2] are HDF5 objects (datasets, groups, datatypes or links)\n");
printf("The 'count' value must be a positive integer\n");
printf("The 'delta' and 'relative' values must be positive numbers\n");
printf("The -d compare criteria is |a - b| > delta\n");
printf("The -p compare criteria is |1 - b/a| > relative\n");
printf("\n");
printf("h5diff has four modes of output:\n");
printf(" Normal mode: print the number of differences found and where they occured\n");
printf(" Report mode: print the above plus the differences\n");
printf(" Verbose mode: print the above plus a list of objects and warnings\n");
printf(" Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found)\n");
printf("\n");
printf("Examples of use:\n");
printf("\n");
printf("1) h5diff file1 file2 /g1/dset1 /g1/dset2\n");
printf("\n");
printf(" Compares object '/g1/dset1' in file1 with '/g1/dset2' in file2\n");
printf("\n");
printf("2) h5diff file1 file2 /g1/dset1\n");
printf("\n");
printf(" Compares object '/g1/dset1' in both files\n");
printf("\n");
printf("3) h5diff file1 file2\n");
printf("\n");
printf(" Compares all objects in both files\n");
printf("\n");
printf("Note) file1 and file2 can be the same file. Use\n");
printf("\n");
printf(" h5diff file1 file1 /g1/dset1 /g1/dset2\n");
printf("\n");
printf(" to compare '/g1/dset1' and '/g1/dset2' in the same file\n");
printf("\n");
printf("If no objects are specified, h5diff only compares objects with the same ");
printf("absolute path in both files. The compare criteria is: ");
printf("1) datasets: numerical array differences 2) groups: name string difference ");
printf("3) datatypes: the return value of H5Tequal 2) links: name string difference of the linked value\n");
#ifdef H5_HAVE_PARALLEL
if(g_Parallel)
h5diff_exit(0);
else
#endif
exit(0);
}
/*-------------------------------------------------------------------------
* Function: h5diff_exit
*
* Purpose: dismiss phdiff worker processes and exit
*
* Return: none
*
* Programmer: Albert Cheng
* Date: Feb 6, 2005
*
* Comments:
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void h5diff_exit(int status)
{
#ifdef H5_HAVE_PARALLEL
/* if in parallel mode, dismiss workers, close down MPI, then exit */
if((g_nTasks > 1) && g_Parallel) {
phdiff_dismiss_workers();
MPI_Barrier(MPI_COMM_WORLD);
}
if(g_Parallel)
MPI_Finalize();
#endif
exit(status);
}