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* Port VOL User Guide to doxygen * Fix spelling * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
439 lines
21 KiB
Plaintext
439 lines
21 KiB
Plaintext
/** \page UG HDF5 User Guide
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<center>
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HDF5 Release 1.14
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\image html HDFG-logo.png "The HDF Group"
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</center>
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\ref sec_data_model
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\li \ref subsec_data_model_intro
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\li \ref subsec_data_model_abstract
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<ul>
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<li> \ref subsubsec_data_model_abstract_file
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<li> \ref subsubsec_data_model_abstract_group
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<li> \ref subsubsec_data_model_abstract_dataset
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<li> \ref subsubsec_data_model_abstract_space
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<li> \ref subsubsec_data_model_abstract_type
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<li> \ref subsubsec_data_model_abstract_attr
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<li> \ref subsubsec_data_model_abstract_plist
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<li> \ref subsubsec_data_model_abstract_link
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</ul>
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\li \ref subsec_data_model_storage
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<ul>
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<li> \ref subsubsec_data_model_storage_spec
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<li> \ref subsubsec_data_model_storage_imple
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</ul>
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\li \ref subsec_data_model_structure
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<ul>
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<li> \ref subsubsec_data_model_structure_file
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<li> \ref subsubsec_data_model_structure_path
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<li> \ref subsubsec_data_model_structure_example
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</ul>
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\ref sec_program
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\li \ref subsec_program_intro
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\li \ref subsec_program_model
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<ul>
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<li> \ref subsubsec_program_model_create
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<li> \ref subsubsec_program_model_dset
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<li> \ref subsubsec_program_model_close
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<li> \ref subsubsec_program_model_data
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<li> \ref subsubsec_program_model_partial
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<li> \ref subsubsec_program_model_info
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<li> \ref subsubsec_program_model_compound
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<li> \ref subsubsec_program_model_extend
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<li> \ref subsubsec_program_model_group
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<li> \ref subsubsec_program_model_attr
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</ul>
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\li \ref subsec_program_transfer_pipeline
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\ref sec_file
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\li \ref subsec_file_intro
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\li \ref subsec_file_access_modes
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\li \ref subsec_file_creation_access
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\li \ref subsec_file_drivers
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\li \ref subsec_file_program_model
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<ul>
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<li> \ref subsubsec_file_program_model_create
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<li> \ref subsubsec_file_program_model_open
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<li> \ref subsubsec_file_program_model_close
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</ul>
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\li \ref subsec_file_h5dump
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\li \ref subsec_file_summary
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\li \ref subsec_file_create
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\li \ref subsec_file_closes
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\li \ref subsec_file_property_lists
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<ul>
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<li> \ref subsubsec_file_property_lists_create
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<li> \ref subsubsec_file_property_lists_props
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<li> \ref subsubsec_file_property_lists_access
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</ul>
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\li \ref subsec_file_alternate_drivers
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<ul>
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<li> \ref subsubsec_file_alternate_drivers_id
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<li> \ref subsubsec_file_alternate_drivers_sec2
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<li> \ref subsubsec_file_alternate_drivers_direct
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<li> \ref subsubsec_file_alternate_drivers_log
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<li> \ref subsubsec_file_alternate_drivers_win
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<li> \ref subsubsec_file_alternate_drivers_stdio
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<li> \ref subsubsec_file_alternate_drivers_mem
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<li> \ref subsubsec_file_alternate_drivers_family
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<li> \ref subsubsec_file_alternate_drivers_multi
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<li> \ref subsubsec_file_alternate_drivers_split
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<li> \ref subsubsec_file_alternate_drivers_par
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</ul>
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\li \ref subsec_file_examples
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<ul>
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<li> \ref subsubsec_file_examples_trunc
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<li> \ref subsubsec_file_examples_props
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<li> \ref subsubsec_file_examples_access
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</ul>
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\li \ref subsec_file_multiple
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\ref sec_group
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\li \ref subsec_group_intro
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\li \ref subsec_group_descr
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<ul>
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<li> \ref subsubsec_group_descr_object
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<li> \ref subsubsec_group_descr_model
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<li> \ref subsubsec_group_descr_path
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<li> \ref subsubsec_group_descr_impl
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</ul>
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\li \ref subsec_group_h5dump
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\li \ref subsec_group_function
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\li \ref subsec_group_program
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<ul>
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<li> \ref subsubsec_group_program_create
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<li> \ref subsubsec_group_program_open
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<li> \ref subsubsec_group_program_dataset
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<li> \ref subsubsec_group_program_close
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<li> \ref subsubsec_group_program_links
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<li> \ref subsubsec_group_program_info
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<li> \ref subsubsec_group_program_objs
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<li> \ref subsubsec_group_program_all
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</ul>
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\li \ref subsec_group_examples
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\ref sec_dataset
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\li \ref subsec_dataset_intro
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\li \ref subsec_dataset_function
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\li \ref subsec_dataset_program
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<ul>
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<li> \ref subsubsec_dataset_program_general
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<li> \ref subsubsec_dataset_program_create
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<li> \ref subsubsec_dataset_program_transfer
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<li> \ref subsubsec_dataset_program_read
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</ul>
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\li \ref subsec_dataset_transfer Data Transfer
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<ul>
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<li> \ref subsubsec_dataset_transfer_pipe
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<li> \ref subsubsec_dataset_transfer_filter
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<li> \ref subsubsec_dataset_transfer_drive
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<li> \ref subsubsec_dataset_transfer_props
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<li> \ref subsubsec_dataset_transfer_store
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<li> \ref subsubsec_dataset_transfer_partial
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</ul>
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\li \ref subsec_dataset_allocation
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<ul>
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<li> \ref subsubsec_dataset_allocation_store
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<li> \ref subsubsec_dataset_allocation_delete
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<li> \ref subsubsec_dataset_allocation_release
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<li> \ref subsubsec_dataset_allocation_ext
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</ul>
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\li \ref subsec_dataset_filters
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<ul>
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<li> \ref subsubsec_dataset_filters_nbit
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<li> \ref subsubsec_dataset_filters_scale
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<li> \ref subsubsec_dataset_filters_szip
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</ul>
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\ref sec_datatype
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\li \ref subsec_datatype_intro
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\li \ref subsec_datatype_model
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<ul>
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<li> \ref subsubsec_datatype_model_class
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<li> \ref subsubsec_datatype_model_predefine
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</ul>
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\li \ref subsec_datatype_usage
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<ul>
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<li> \ref subsubsec_datatype_usage_object
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<li> \ref subsubsec_datatype_usage_create
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<li> \ref subsubsec_datatype_usage_transfer
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<li> \ref subsubsec_datatype_usage_discover
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<li> \ref subsubsec_datatype_usage_user
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</ul>
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\li \ref subsec_datatype_function
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\li \ref subsec_datatype_program
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<ul>
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<li> \ref subsubsec_datatype_program_discover
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<li> \ref subsubsec_datatype_program_define
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</ul>
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\li \ref subsec_datatype_other
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<ul>
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<li> \ref subsubsec_datatype_other_strings
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<li> \ref subsubsec_datatype_other_refs
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<li> \ref subsubsec_datatype_other_enum
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<li> \ref subsubsec_datatype_other_opaque
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<li> \ref subsubsec_datatype_other_bitfield
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</ul>
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\li \ref subsec_datatype_fill
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\li \ref subsec_datatype_complex
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<ul>
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<li> \ref subsubsec_datatype_complex_create
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<li> \ref subsubsec_datatype_complex_analyze
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</ul>
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\li \ref subsec_datatype_life
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\li \ref subsec_datatype_transfer
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\li \ref subsec_datatype_text
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\ref sec_dataspace
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\li \ref subsec_dataspace_intro
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\li \ref subsec_dataspace_function
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\li \ref subsec_dataspace_program
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<ul>
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<li> \ref subsubsec_dataspace_program_object
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<li> \ref subsubsec_dataspace_program_model
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</ul>
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\li \ref subsec_dataspace_transfer
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<ul>
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<li> \ref subsubsec_dataspace_transfer_select
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<li> \ref subsubsec_dataspace_transfer_model
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</ul>
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\li \ref subsec_dataspace_select
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\li \ref subsec_dataspace_refer
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<ul>
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<li> \ref subsubsec_dataspace_refer_use
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<li> \ref subsubsec_dataspace_refer_create
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<li> \ref subsubsec_dataspace_refer_read
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</ul>
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\li \ref subsec_dataspace_sample
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\ref sec_attribute
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\li \ref subsec_attribute_intro
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\li \ref subsec_attribute_program
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<ul>
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<li> <!-- \subsubsection subsubsec_attribute_program_exist --> To Open and Read or Write an Existing Attribute </li>
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</ul>
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\li \ref subsec_error_H5A
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\li \ref subsec_attribute_work
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<ul>
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<li> \ref subsubsec_attribute_work_struct
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<li> \ref subsubsec_attribute_work_create
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<li> \ref subsubsec_attribute_work_access
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<li> \ref subsubsec_attribute_work_info
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<li> \ref subsubsec_attribute_work_iterate
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<li> \ref subsubsec_attribute_work_delete
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<li> \ref subsubsec_attribute_work_close
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</ul>
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\li \ref subsec_attribute_special
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\ref sec_error
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\li \ref subsec_error_intro
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\li \ref subsec_error_program
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\li \ref subsec_error_H5E
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\li \ref subsec_error_ops
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<ul>
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<li> \ref subsubsec_error_ops_stack
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<li> \ref subsubsec_error_ops_print
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<li> \ref subsubsec_error_ops_mute
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<li> \ref subsubsec_error_ops_custom_print
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<li> \ref subsubsec_error_ops_walk
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<li> \ref subsubsec_error_ops_travers
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</ul>
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\li \ref subsec_error_adv
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<ul>
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<li> \ref subsubsec_error_adv_more
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<li> \ref subsubsec_error_adv_app
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</ul>
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\ref sec_plist
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\li \ref subsec_plist_intro
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\li \ref subsec_plist_class
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<ul>
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<li> \ref subsubsec_plist_class
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<li> \ref subsubsec_plist_lists
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<li> \ref subsubsec_plist_props
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</ul>
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\li \ref subsec_plist_program
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<ul>
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<li> \ref subsubsec_plist_default
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<li> \ref subsubsec_plist_basic
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<li> \ref subsubsec_plist_additional
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</ul>
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\li \ref subsec_plist_generic
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\li \ref subsec_plist_H5P
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\li \ref subsec_plist_resources
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\li \ref subsec_plist_notes
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\ref sec_vol
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\li \ref subsec_vol_intro
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\li \ref subsec_vol_abstract_layer
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\li \ref subsec_vol_quickstart
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<ul>
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<li> \ref subsubsec_vol_quick_read
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<li> \ref subsubsec_vol_quick_use
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<li> \ref subsubsec_vol_quick_set
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<li> \ref subsubsec_vol_quick_update
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<li> \ref subsubsec_vol_quick_plugin
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<li> \ref subsubsec_vol_quick_opt
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</ul>
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\li \ref subsec_vol_connect
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<ul>
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<li> \ref subsubsec_vol_connect_register
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<li> \ref subsubsec_vol_connect_version
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<li> \ref subsubsec_vol_connect_reg_calls
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<li> \ref subsubsec_vol_connect_set_vol
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<li> \ref subsubsec_vol_connect_search
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<li> \ref subsubsec_vol_connect_param
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<li> \ref subsubsec_vol_connect_env
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</ul>
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\li \ref subsec_vol_adapt
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<ul>
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<li> \ref subsubsec_vol_adapt_token
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<li> \ref subsubsec_vol_adapt_api
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<li> \ref subsubsec_vol_adapt_native
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</ul>
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\li \ref subsec_vol_lang
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<ul>
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<li> \ref subsubsec_vol_lang_c
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<li> \ref subsubsec_vol_lang_fort
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<li> \ref subsubsec_vol_lang_java
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</ul>
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\li \ref subsec_vol_cl
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\li \ref subsec_vol_compat
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<ul>
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<li> \ref subsubsec_vol_compat_native
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<li> \ref subsubsec_vol_compat_indep
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<li> \ref subsubsec_vol_compat_opt
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</ul>
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\ref sec_async
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\li \ref subsec_async_intro
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\ref sec_map
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\ref sec_addition
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\page AR_UG Additional Resources
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\section sec_addition Additional Resources
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These documents provide additional information for the use and tuning of specific HDF5 features.
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<table style=" border-spacing:0; padding-left:6.00pt; padding-top:6.00pt; padding-right:6.00pt; padding-bottom:6.00pt; float:aligncenter; width:100%; max-width:432.00pt;" cellspacing="0">
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<caption x-list-start="1" style="font-size: 12.0pt;">Table of Additional resources</caption>
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<tr style="height: 23.00pt;">
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<th style="width: 234.000pt; border-top-style: solid; border-top-width: 1px; border-top-color: #228a22; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align : top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Document</p>
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</th>
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<th style="width: 198.000pt; border-top-style: solid; border-top-width: 1px; border-top-color: #228a22; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align : top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Comments</p>
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</th>
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</tr>
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<tr style="height: 23.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span>@ref HDF5Examples</span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Code examples by API. </p>
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</td>
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</tr>
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<tr style="height: 36.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/Chunking/index.html">Chunking in HDF5</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Structuring the use of chunking and tuning it for performance.</p>
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</td>
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</tr>
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<tr style="height: 36.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span class="FM_LT_LinkText"><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/DirectChunkWrite/UsingDirectChunkWrite.pdf">Using the Direct Chunk Write Function</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes another way that chunks can be written to datasets.</p>
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</td>
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</tr>
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<tr style="height: 88.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/CommittedDatatypeCopying/CopyingCommittedDatatypesWithH5Ocopy.pdf">Copying Committed Datatypes with H5Ocopy</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes how to copy to another file a dataset that uses a committed datatype or an object with an attribute that uses a committed datatype so that the committed datatype in the destination file can be used by multiple objects.</p>
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</td>
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</tr>
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<tr style="height: 36.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/MetadataCache/index.html">Metadata Caching in HDF5</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Managing the HDF5 metadata cache and tuning it for performance.</p>
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</td>
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</tr>
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<tr style="height: 49.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/DynamicallyLoadedFilters/HDF5DynamicallyLoadedFilters.pdf">HDF5 Dynamically Loaded Filters</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes how an HDF5 application can apply a filter that is not registered with the HDF5 Library.</p>
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</td>
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</tr>
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<tr style="height: 62.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/FileImageOperations/HDF5FileImageOperations.pdf">HDF5 File Image Operations</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes how to work with HDF5 files in memory. Disk I/O is not required when file images are opened, created, read from, or written to.</p>
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</td>
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</tr>
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<tr style="height: 62.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/ModifiedRegionWrites/ModifiedRegionWrites.pdf">Modified Region Writes</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes how to set write operations for in-memory files so that only modified regions are written to storage. Available when the Core (Memory) VFD is used.</p>
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</td>
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</tr>
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<tr style="height: 36.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/UsingIdentifiers/index.html">Using Identifiers</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes how identifiers behave and how they should be treated.</p>
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</td>
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</tr>
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<tr style="height: 36.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/UsingUnicode/index.html">Using UTF-8 Encoding in HDF5 Applications</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes the use of UTF-8 Unicode character encodings in HDF5 applications.</p>
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</td>
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</tr>
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<tr style="height: 49.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Advanced/FreeingMemory/FreeingMemoryAllocatedByTheHdf5Library.pdf">Freeing Memory Allocated by the HDF5 Library</a></span></p>
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</td>
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|
<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>Describes how inconsistent memory management can cause heap corruption or resource leaks and possible solutions.</p>
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</td>
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</tr>
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<tr style="height: 23.00pt;">
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<td style="width: 234.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p style="font-style: italic; color: #0000ff;"><span><a href="http://www.hdfgroup.org/HDF5/doc/Glossary.html">HDF5 Glossary</a></span></p>
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</td>
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<td style="width: 198.000pt; border-bottom-style: solid; border-bottom-width: 1px; border-bottom-color: #228a22; vertical-align: top;padding-left: 6.00pt; padding-top: 3.00pt; padding-right: 6.00pt; padding-bottom: 3.00pt;">
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<p>A glossary of terms.</p>
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</td>
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</tr>
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</table>
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Previous Chapter \ref sec_plist
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\par Don't like what you see? - You can help to improve this User Guide
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Complete the survey linked near the top of this page!\n
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We treat documentation like code: Fork the
|
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<a href="https://github.com/HDFGroup/hdf5">HDF5 repo</a>, make changes, and create a
|
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<a href="https://github.com/HDFGroup/hdf5/pulls">pull request</a> !\n
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*/ |