mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2024-12-03 02:32:04 +08:00
Code Issues Packages Projects Releases Wiki Activity
92723c7e02
hdf5/test/set_extent.c
Quincey Koziol 1ec351813b [svn-r8600] Purpose: 
Code optimization

Description:
    Don't recompute the internal index value for looking up the chunk in the
hash table, just use the value already computed from iterating through the
chunks.

Platforms tested:
    Solaris 2.7 (arabica)
    FreeBSD 4.9 (sleipnir) w/parallel
2004-05-31 14:59:59 -05:00

499 lines
17 KiB
C
Raw Blame History

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
* April 12, 2002
*
* Purpose: Tests the H5Dset_extent call
*/
#include "hdf5.h"
#include "h5test.h"
/*-------------------------------------------------------------------------
*
* Tests the function H5Dset_extent. In the current version of the library
* the dataset MUST be chunked.
*
*-------------------------------------------------------------------------
*/
#define RANK 2
#define ISTORE_IK 64
int main( void )
{
hid_t file_id;
hid_t dataset_id=(-1);
hid_t space_id=(-1);
hid_t plist_id=(-1);
hid_t fcpl; /* File creation property list */
hsize_t dims[RANK] = { 90, 90 };
hsize_t dims_new[RANK] = { 70, 70 };
hsize_t dims_chunk[RANK] = { 20, 20 };
hsize_t dims_out[RANK];
hsize_t maxdims[RANK] = { H5S_UNLIMITED, H5S_UNLIMITED };
int data[ 90 ][ 90 ];
int buf1[ 70 ][ 70 ];
int buf2[ 90 ][ 90 ];
int i, j, n = 0;
int fillvalue = 1; /* Fill value for the dataset */
for( i = 0; i < 90; i++ )
for( j = 0; j < 90; j++ )
data[i][j] = n++;
/*-------------------------------------------------------------------------
* Test H5Dset_extent with chunks on the raw data cache
*-------------------------------------------------------------------------
*/
/* Create a new file using default properties. */
if ((file_id = H5Fcreate( "set_extent_create.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT ))<0) TEST_ERROR;
TESTING("extend dataset create with fill value");
/* Create the data space with unlimited dimensions. */
if ((space_id = H5Screate_simple( RANK, dims, maxdims ))<0) TEST_ERROR;
/* Modify dataset creation properties, i.e. enable chunking. */
if ((plist_id = H5Pcreate (H5P_DATASET_CREATE ))<0) TEST_ERROR;
if (H5Pset_chunk( plist_id, RANK, dims_chunk )<0) TEST_ERROR;
if (H5Pset_fill_value( plist_id, H5T_NATIVE_INT, &fillvalue )<0) TEST_ERROR;
/*-------------------------------------------------------------------------
* Create and write one dataset
*-------------------------------------------------------------------------
*/
/* Create a new dataset */
if ((dataset_id = H5Dcreate( file_id , "Dataset1", H5T_NATIVE_INT, space_id, plist_id ))<0) TEST_ERROR;
/* Write the data. */
if (H5Dwrite( dataset_id , H5T_NATIVE_INT, space_id, H5S_ALL, H5P_DEFAULT, data )<0) TEST_ERROR;
/*-------------------------------------------------------------------------
* Set new dimensions for the array; shrink it
*-------------------------------------------------------------------------
*/
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id , dims_new )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims_new[0] ) TEST_ERROR;
if ( dims_out[1] != dims_new[1] ) TEST_ERROR;
/*-------------------------------------------------------------------------
* Read
*-------------------------------------------------------------------------
*/
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ )
for( j = 0; j < (int)dims_out[1]; j++ )
if ( buf1[i][j] != data[i][j] ) {
printf("buf1[%d][%d]=%d\n",i,j,buf1[i][j]);
printf("data[%d][%d]=%d\n",i,j,data[i][j]);
TEST_ERROR;
} /* end if */
/*-------------------------------------------------------------------------
* Set new dimensions for the array; expand it again
*-------------------------------------------------------------------------
*/
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id , dims )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims[0] ) TEST_ERROR;
/*-------------------------------------------------------------------------
* Read
*-------------------------------------------------------------------------
*/
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ ) {
for( j = 0; j < (int)dims_out[1]; j++ ) {
if ( i >= 70 || j >= 70 ) {
if ( buf2[i][j] != fillvalue ) TEST_ERROR;
}
else {
if ( buf2[i][j] != data[i][j] ) TEST_ERROR;
}
}
}
/*-------------------------------------------------------------------------
* Close/release resources
*-------------------------------------------------------------------------
*/
H5Dclose( dataset_id );
H5Sclose( space_id );
H5Pclose( plist_id );
PASSED();
TESTING("extend dataset create without fill value");
/* Create the data space with unlimited dimensions. */
if ((space_id = H5Screate_simple( RANK, dims, maxdims ))<0) TEST_ERROR;
/* Modify dataset creation properties, i.e. enable chunking. */
if ((plist_id = H5Pcreate (H5P_DATASET_CREATE ))<0) TEST_ERROR;
if (H5Pset_chunk( plist_id, RANK, dims_chunk )<0) TEST_ERROR;
if (H5Pset_fill_time( plist_id, H5D_FILL_TIME_ALLOC)<0) TEST_ERROR;
/*-------------------------------------------------------------------------
* Create and write one dataset
*-------------------------------------------------------------------------
*/
/* Create a new dataset */
if ((dataset_id = H5Dcreate( file_id , "Dataset2", H5T_NATIVE_INT, space_id, plist_id ))<0) TEST_ERROR;
/* Write the data. */
if (H5Dwrite( dataset_id , H5T_NATIVE_INT, space_id, H5S_ALL, H5P_DEFAULT, data )<0) TEST_ERROR;
/*-------------------------------------------------------------------------
* Set new dimensions for the array; shrink it
*-------------------------------------------------------------------------
*/
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id , dims_new )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims_new[0] ) TEST_ERROR;
/*-------------------------------------------------------------------------
* Read
*-------------------------------------------------------------------------
*/
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ )
for( j = 0; j < (int)dims_out[1]; j++ )
if ( buf1[i][j] != data[i][j] ) TEST_ERROR;
/*-------------------------------------------------------------------------
* Set new dimensions for the array; expand it again
*-------------------------------------------------------------------------
*/
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id , dims )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims[0] ) TEST_ERROR;
/*-------------------------------------------------------------------------
* Read
*-------------------------------------------------------------------------
*/
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ ) {
for( j = 0; j < (int)dims_out[1]; j++ ) {
if ( i >= 70 || j >= 70 ) {
if ( buf2[i][j] != 0 ) TEST_ERROR;
}
else {
if ( buf2[i][j] != data[i][j] ) TEST_ERROR;
}
}
}
/*-------------------------------------------------------------------------
* Close/release resources
*-------------------------------------------------------------------------
*/
H5Dclose( dataset_id );
H5Sclose( space_id );
H5Pclose( plist_id );
H5Fclose( file_id );
PASSED();
/*-------------------------------------------------------------------------
* Test H5Dset_extent with chunks written to file
*-------------------------------------------------------------------------
*/
/* Create a file creation property list */
if((fcpl = H5Pcreate(H5P_FILE_CREATE))<0) TEST_ERROR;
/* Set non-default indexed storage B-tree internal 'K' value */
if(H5Pset_istore_k(fcpl,ISTORE_IK)<0) TEST_ERROR;
/* Create a new file using properties. */
if ((file_id = H5Fcreate( "set_extent_read.h5", H5F_ACC_TRUNC, fcpl, H5P_DEFAULT ))<0) TEST_ERROR;
/* Close property list */
if(H5Pclose(fcpl)<0) TEST_ERROR;
TESTING("extend dataset read with fill value");
/* Create the data space with unlimited dimensions. */
if ((space_id = H5Screate_simple( RANK, dims, maxdims ))<0) TEST_ERROR;
/* Modify dataset creation properties, i.e. enable chunking. */
if ((plist_id = H5Pcreate (H5P_DATASET_CREATE ))<0) TEST_ERROR;
if (H5Pset_chunk( plist_id, RANK, dims_chunk )<0) TEST_ERROR;
if (H5Pset_fill_value( plist_id, H5T_NATIVE_INT, &fillvalue )<0) TEST_ERROR;
/* Create a new dataset within the file using cparms creation properties. */
if ((dataset_id = H5Dcreate( file_id , "Dataset1", H5T_NATIVE_INT, space_id, plist_id ))<0) TEST_ERROR;
/* Write the data. */
if (H5Dwrite( dataset_id , H5T_NATIVE_INT, space_id, H5S_ALL, H5P_DEFAULT, data )<0) TEST_ERROR;
/* Close/release resources. */
H5Dclose( dataset_id );
H5Sclose( space_id );
H5Pclose( plist_id );
H5Fclose( file_id );
/* Open the file */
if ((file_id = H5Fopen( "set_extent_read.h5", H5F_ACC_RDWR, H5P_DEFAULT ))<0) TEST_ERROR;
/* Open the dataset */
if ((dataset_id = H5Dopen( file_id , "Dataset1" ))<0) TEST_ERROR;
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id, dims_new )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims_new[0] ) TEST_ERROR;
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ )
for( j = 0; j < (int)dims_out[1]; j++ )
if ( buf1[i][j] != data[i][j] ) TEST_ERROR;
/*-------------------------------------------------------------------------
* Set new dimensions for the array; expand it again
*-------------------------------------------------------------------------
*/
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id , dims )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims[0] ) TEST_ERROR;
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ ) {
for( j = 0; j < (int)dims_out[1]; j++ ) {
if ( i >= 70 || j >= 70 ) {
if ( buf2[i][j] != fillvalue ) TEST_ERROR;
}
else {
if ( buf2[i][j] != data[i][j] ) TEST_ERROR;
}
}
}
/*-------------------------------------------------------------------------
* Close/release resources
*-------------------------------------------------------------------------
*/
H5Dclose( dataset_id );
H5Sclose( space_id );
PASSED();
TESTING("extend dataset read without fill value");
/* Create the data space with unlimited dimensions. */
if ((space_id = H5Screate_simple( RANK, dims, maxdims ))<0) TEST_ERROR;
/* Modify dataset creation properties, i.e. enable chunking. */
if ((plist_id = H5Pcreate (H5P_DATASET_CREATE ))<0) TEST_ERROR;
if (H5Pset_chunk( plist_id, RANK, dims_chunk )<0) TEST_ERROR;
if (H5Pset_fill_time( plist_id, H5D_FILL_TIME_ALLOC)<0) TEST_ERROR;
/* Create a new dataset within the file using cparms creation properties. */
if ((dataset_id = H5Dcreate( file_id , "Dataset2", H5T_NATIVE_INT, space_id, plist_id ))<0) TEST_ERROR;
/* Write the data. */
if (H5Dwrite( dataset_id , H5T_NATIVE_INT, space_id, H5S_ALL, H5P_DEFAULT, data )<0) TEST_ERROR;
/* Close/release resources. */
H5Dclose( dataset_id );
H5Sclose( space_id );
H5Pclose( plist_id );
H5Fclose( file_id );
/* Open the file */
if ((file_id = H5Fopen( "set_extent_read.h5", H5F_ACC_RDWR, H5P_DEFAULT ))<0) TEST_ERROR;
/* Open the dataset */
if ((dataset_id = H5Dopen( file_id , "Dataset2" ))<0) TEST_ERROR;
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id, dims_new )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims_new[0] ) TEST_ERROR;
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ )
for( j = 0; j < (int)dims_out[1]; j++ )
if ( buf1[i][j] != data[i][j] ) TEST_ERROR;
/*-------------------------------------------------------------------------
* Set new dimensions for the array; expand it again
*-------------------------------------------------------------------------
*/
/* Set new dimensions for the array. */
if (H5Dset_extent( dataset_id , dims )<0) TEST_ERROR;
/* Get the space. */
if ((space_id = H5Dget_space( dataset_id ))<0) TEST_ERROR;
/* Get dimensions. */
if (H5Sget_simple_extent_dims( space_id, dims_out, NULL )<0) TEST_ERROR;
if ( dims_out[0] != dims[0] ) TEST_ERROR;
/* Read the new dataset. */
if (H5Dread( dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2 )<0) TEST_ERROR;
/* Compare the read array with the original array */
for( i = 0; i < (int)dims_out[0]; i++ ) {
for( j = 0; j < (int)dims_out[1]; j++ ) {
if ( i >= 70 || j >= 70 ) {
if ( buf2[i][j] != 0 ) TEST_ERROR;
}
else {
if ( buf2[i][j] != data[i][j] ) TEST_ERROR;
}
}
}
/*-------------------------------------------------------------------------
* Close/release resources
*-------------------------------------------------------------------------
*/
H5Dclose( dataset_id );
H5Sclose( space_id );
H5Fclose( file_id );
PASSED();
puts("All set_extent tests passed.");
return 0;
error:
H5Dclose( dataset_id );
H5Sclose( space_id );
H5Pclose( plist_id );
H5Fclose( file_id );
H5_FAILED();
return 1;
}
Reference in New Issue View Git Blame Copy Permalink