mirror of
https://github.com/HDFGroup/hdf5.git
synced 2025-01-24 15:25:00 +08:00
4819f89d3f
* Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
1509 lines
53 KiB
C
1509 lines
53 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
|
|
* Copyright by The HDF Group. *
|
|
* Copyright by the Board of Trustees of the University of Illinois. *
|
|
* All rights reserved. *
|
|
* *
|
|
* This file is part of HDF5. The full HDF5 copyright notice, including *
|
|
* terms governing use, modification, and redistribution, is contained in *
|
|
* the COPYING file, which can be found at the root of the source code *
|
|
* distribution tree, or in https://www.hdfgroup.org/licenses. *
|
|
* If you do not have access to either file, you may request a copy from *
|
|
* help@hdfgroup.org. *
|
|
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
*
|
|
* Created: H5Gint.c
|
|
* April 5 2007
|
|
* Quincey Koziol
|
|
*
|
|
* Purpose: General use, "internal" routines for groups.
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
/****************/
|
|
/* Module Setup */
|
|
/****************/
|
|
|
|
#include "H5Gmodule.h" /* This source code file is part of the H5G module */
|
|
|
|
/***********/
|
|
/* Headers */
|
|
/***********/
|
|
#include "H5private.h" /* Generic Functions */
|
|
#include "H5Eprivate.h" /* Error handling */
|
|
#include "H5FOprivate.h" /* File objects */
|
|
#include "H5Gpkg.h" /* Groups */
|
|
#include "H5Iprivate.h" /* IDs */
|
|
#include "H5Lprivate.h" /* Links */
|
|
#include "H5MMprivate.h" /* Memory management */
|
|
|
|
/****************/
|
|
/* Local Macros */
|
|
/****************/
|
|
|
|
/******************/
|
|
/* Local Typedefs */
|
|
/******************/
|
|
|
|
/* User data for path traversal routine for "insertion file" routine */
|
|
typedef struct {
|
|
H5G_loc_t *loc; /* Pointer to the location for insertion */
|
|
} H5G_trav_ins_t;
|
|
|
|
/* User data for application-style iteration over links in a group */
|
|
typedef struct {
|
|
hid_t gid; /* The group ID for the application callback */
|
|
H5O_loc_t * link_loc; /* The object location for the link */
|
|
H5G_link_iterate_t lnk_op; /* Application callback */
|
|
void * op_data; /* Application's op data */
|
|
} H5G_iter_appcall_ud_t;
|
|
|
|
/* User data for recursive traversal over links from a group */
|
|
typedef struct {
|
|
hid_t gid; /* The group ID for the starting group */
|
|
H5G_loc_t * curr_loc; /* Location of starting group */
|
|
H5_index_t idx_type; /* Index to use */
|
|
H5_iter_order_t order; /* Iteration order within index */
|
|
H5SL_t * visited; /* Skip list for tracking visited nodes */
|
|
char * path; /* Path name of the link */
|
|
size_t curr_path_len; /* Current length of the path in the buffer */
|
|
size_t path_buf_size; /* Size of path buffer */
|
|
H5L_iterate2_t op; /* Application callback */
|
|
void * op_data; /* Application's op data */
|
|
} H5G_iter_visit_ud_t;
|
|
|
|
/********************/
|
|
/* Package Typedefs */
|
|
/********************/
|
|
|
|
/********************/
|
|
/* Local Prototypes */
|
|
/********************/
|
|
|
|
static herr_t H5G__open_oid(H5G_t *grp);
|
|
static herr_t H5G__visit_cb(const H5O_link_t *lnk, void *_udata);
|
|
static herr_t H5G__close_cb(H5VL_object_t *grp_vol_obj, void **request);
|
|
|
|
/*********************/
|
|
/* Package Variables */
|
|
/*********************/
|
|
|
|
/* Package initialization variable */
|
|
hbool_t H5_PKG_INIT_VAR = FALSE;
|
|
|
|
/* Declare a free list to manage the H5G_t struct */
|
|
H5FL_DEFINE(H5G_t);
|
|
H5FL_DEFINE(H5G_shared_t);
|
|
|
|
/* Declare the free list to manage H5_obj_t's */
|
|
H5FL_DEFINE(H5_obj_t);
|
|
|
|
/*****************************/
|
|
/* Library Private Variables */
|
|
/*****************************/
|
|
|
|
/*******************/
|
|
/* Local Variables */
|
|
/*******************/
|
|
|
|
/* Group ID class */
|
|
static const H5I_class_t H5I_GROUP_CLS[1] = {{
|
|
H5I_GROUP, /* ID class value */
|
|
0, /* Class flags */
|
|
0, /* # of reserved IDs for class */
|
|
(H5I_free_t)H5G__close_cb /* Callback routine for closing objects of this class */
|
|
}};
|
|
|
|
/* Flag indicating "top" of interface has been initialized */
|
|
static hbool_t H5G_top_package_initialize_s = FALSE;
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_init
|
|
*
|
|
* Purpose: Initialize the interface from some other layer.
|
|
*
|
|
* Return: Success: non-negative
|
|
*
|
|
* Failure: negative
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G_init(void)
|
|
{
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
|
/* FUNC_ENTER() does all the work */
|
|
|
|
done:
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G_init() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__init_package
|
|
*
|
|
* Purpose: Initializes the H5G interface.
|
|
*
|
|
* Return: Non-negative on success/Negative on failure
|
|
*
|
|
* Programmer: Robb Matzke
|
|
* Monday, January 5, 1998
|
|
*
|
|
* Notes: The group creation properties are registered in the property
|
|
* list interface initialization routine (H5P_init_package)
|
|
* so that the file creation property class can inherit from it
|
|
* correctly. (Which allows the file creation property list to
|
|
* control the group creation properties of the root group of
|
|
* a file) QAK - 24/10/2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G__init_package(void)
|
|
{
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
|
|
|
FUNC_ENTER_PACKAGE
|
|
|
|
/* Initialize the ID group for the group IDs */
|
|
if (H5I_register_type(H5I_GROUP_CLS) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to initialize interface")
|
|
|
|
/* Mark "top" of interface as initialized, too */
|
|
H5G_top_package_initialize_s = TRUE;
|
|
|
|
done:
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__init_package() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_top_term_package
|
|
*
|
|
* Purpose: Close the "top" of the interface, releasing IDs, etc.
|
|
*
|
|
* Return: Success: Positive if anything is done that might
|
|
* affect other interfaces; zero otherwise.
|
|
* Failure: Negative.
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Sunday, September 13, 2015
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
H5G_top_term_package(void)
|
|
{
|
|
int n = 0;
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
if (H5G_top_package_initialize_s) {
|
|
if (H5I_nmembers(H5I_GROUP) > 0) {
|
|
(void)H5I_clear_type(H5I_GROUP, FALSE, FALSE);
|
|
n++; /*H5I*/
|
|
} /* end if */
|
|
|
|
/* Mark closed */
|
|
if (0 == n)
|
|
H5G_top_package_initialize_s = FALSE;
|
|
} /* end if */
|
|
|
|
FUNC_LEAVE_NOAPI(n)
|
|
} /* end H5G_top_term_package() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_term_package
|
|
*
|
|
* Purpose: Terminates the H5G interface
|
|
*
|
|
* Note: Finishes shutting down the interface, after
|
|
* H5G_top_term_package() is called
|
|
*
|
|
* Return: Success: Positive if anything is done that might
|
|
* affect other interfaces; zero otherwise.
|
|
* Failure: Negative.
|
|
*
|
|
* Programmer: Robb Matzke
|
|
* Monday, January 5, 1998
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
H5G_term_package(void)
|
|
{
|
|
int n = 0;
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
if (H5_PKG_INIT_VAR) {
|
|
/* Sanity checks */
|
|
HDassert(0 == H5I_nmembers(H5I_GROUP));
|
|
HDassert(FALSE == H5G_top_package_initialize_s);
|
|
|
|
/* Destroy the group object id group */
|
|
n += (H5I_dec_type_ref(H5I_GROUP) > 0);
|
|
|
|
/* Mark closed */
|
|
if (0 == n)
|
|
H5_PKG_INIT_VAR = FALSE;
|
|
} /* end if */
|
|
|
|
FUNC_LEAVE_NOAPI(n)
|
|
} /* end H5G_term_package() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__close_cb
|
|
*
|
|
* Purpose: Called when the ref count reaches zero on the group's ID
|
|
*
|
|
* Return: SUCCEED/FAIL
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
H5G__close_cb(H5VL_object_t *grp_vol_obj, void **request)
|
|
{
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
|
|
|
FUNC_ENTER_STATIC
|
|
|
|
/* Sanity check */
|
|
HDassert(grp_vol_obj);
|
|
|
|
/* Close the group */
|
|
if (H5VL_group_close(grp_vol_obj, H5P_DATASET_XFER_DEFAULT, request) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "unable to close group")
|
|
|
|
/* Free the VOL object */
|
|
if (H5VL_free_object(grp_vol_obj) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTDEC, FAIL, "unable to free VOL object")
|
|
|
|
done:
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__close_cb() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__create_named
|
|
*
|
|
* Purpose: Internal routine to create a new "named" group.
|
|
*
|
|
* Return: Success: Non-NULL, pointer to new group object.
|
|
*
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* April 5, 2007
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
H5G_t *
|
|
H5G__create_named(const H5G_loc_t *loc, const char *name, hid_t lcpl_id, hid_t gcpl_id)
|
|
{
|
|
H5O_obj_create_t ocrt_info; /* Information for object creation */
|
|
H5G_obj_create_t gcrt_info; /* Information for group creation */
|
|
H5G_t * ret_value = NULL; /* Return value */
|
|
|
|
FUNC_ENTER_PACKAGE
|
|
|
|
/* Check arguments */
|
|
HDassert(loc);
|
|
HDassert(name && *name);
|
|
HDassert(lcpl_id != H5P_DEFAULT);
|
|
HDassert(gcpl_id != H5P_DEFAULT);
|
|
|
|
/* Set up group creation info */
|
|
gcrt_info.gcpl_id = gcpl_id;
|
|
gcrt_info.cache_type = H5G_NOTHING_CACHED;
|
|
HDmemset(&gcrt_info.cache, 0, sizeof(gcrt_info.cache));
|
|
|
|
/* Set up object creation information */
|
|
ocrt_info.obj_type = H5O_TYPE_GROUP;
|
|
ocrt_info.crt_info = &gcrt_info;
|
|
ocrt_info.new_obj = NULL;
|
|
|
|
/* Create the new group and link it to its parent group */
|
|
if (H5L_link_object(loc, name, &ocrt_info, lcpl_id) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, NULL, "unable to create and link to group")
|
|
HDassert(ocrt_info.new_obj);
|
|
|
|
/* Set the return value */
|
|
ret_value = (H5G_t *)ocrt_info.new_obj;
|
|
|
|
done:
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__create_named() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__create
|
|
*
|
|
* Purpose: Creates a new empty group with the specified name. The name
|
|
* is either an absolute name or is relative to LOC.
|
|
*
|
|
* Return: Success: A handle for the group. The group is opened
|
|
* and should eventually be close by calling
|
|
* H5G_close().
|
|
*
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Robb Matzke
|
|
* Aug 11 1997
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
H5G_t *
|
|
H5G__create(H5F_t *file, H5G_obj_create_t *gcrt_info)
|
|
{
|
|
H5G_t * grp = NULL; /*new group */
|
|
unsigned oloc_init = 0; /* Flag to indicate that the group object location was created successfully */
|
|
H5G_t * ret_value = NULL; /* Return value */
|
|
|
|
FUNC_ENTER_PACKAGE
|
|
|
|
/* check args */
|
|
HDassert(file);
|
|
HDassert(gcrt_info->gcpl_id != H5P_DEFAULT);
|
|
|
|
/* create an open group */
|
|
if (NULL == (grp = H5FL_CALLOC(H5G_t)))
|
|
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
|
|
if (NULL == (grp->shared = H5FL_CALLOC(H5G_shared_t)))
|
|
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
|
|
|
|
/* Create the group object header */
|
|
if (H5G__obj_create(file, gcrt_info, &(grp->oloc) /*out*/) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, NULL, "unable to create group object header")
|
|
oloc_init = 1; /* Indicate that the object location information is valid */
|
|
|
|
/* Add group to list of open objects in file */
|
|
if (H5FO_top_incr(grp->oloc.file, grp->oloc.addr) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINC, NULL, "can't incr object ref. count")
|
|
if (H5FO_insert(grp->oloc.file, grp->oloc.addr, grp->shared, TRUE) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, NULL, "can't insert group into list of open objects")
|
|
|
|
/* Set the count of times the object is opened */
|
|
grp->shared->fo_count = 1;
|
|
|
|
/* Set return value */
|
|
ret_value = grp;
|
|
|
|
done:
|
|
if (ret_value == NULL) {
|
|
/* Check if we need to release the file-oriented symbol table info */
|
|
if (oloc_init) {
|
|
if (H5O_dec_rc_by_loc(&(grp->oloc)) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTDEC, NULL,
|
|
"unable to decrement refcount on newly created object")
|
|
if (H5O_close(&(grp->oloc), NULL) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, NULL, "unable to release object header")
|
|
if (H5O_delete(file, grp->oloc.addr) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTDELETE, NULL, "unable to delete object header")
|
|
} /* end if */
|
|
if (grp != NULL) {
|
|
if (grp->shared != NULL)
|
|
grp->shared = H5FL_FREE(H5G_shared_t, grp->shared);
|
|
grp = H5FL_FREE(H5G_t, grp);
|
|
} /* end if */
|
|
} /* end if */
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__create() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__open_name
|
|
*
|
|
* Purpose: Opens an existing group by name.
|
|
*
|
|
* Return: Success: Ptr to a new group.
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Monday, August 27, 2007
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
H5G_t *
|
|
H5G__open_name(const H5G_loc_t *loc, const char *name)
|
|
{
|
|
H5G_t * grp = NULL; /* Group to open */
|
|
H5G_loc_t grp_loc; /* Location used to open group */
|
|
H5G_name_t grp_path; /* Opened object group hier. path */
|
|
H5O_loc_t grp_oloc; /* Opened object object location */
|
|
hbool_t loc_found = FALSE; /* Location at 'name' found */
|
|
H5O_type_t obj_type; /* Type of object at location */
|
|
H5G_t * ret_value = NULL; /* Return value */
|
|
|
|
FUNC_ENTER_PACKAGE
|
|
|
|
/* Check args */
|
|
HDassert(loc);
|
|
HDassert(name);
|
|
|
|
/* Set up opened group location to fill in */
|
|
grp_loc.oloc = &grp_oloc;
|
|
grp_loc.path = &grp_path;
|
|
H5G_loc_reset(&grp_loc);
|
|
|
|
/* Find the group object */
|
|
if (H5G_loc_find(loc, name, &grp_loc /*out*/) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, NULL, "group not found")
|
|
loc_found = TRUE;
|
|
|
|
/* Check that the object found is the correct type */
|
|
if (H5O_obj_type(&grp_oloc, &obj_type) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, NULL, "can't get object type")
|
|
if (obj_type != H5O_TYPE_GROUP)
|
|
HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, NULL, "not a group")
|
|
|
|
/* Open the group */
|
|
if (NULL == (grp = H5G_open(&grp_loc)))
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, NULL, "unable to open group")
|
|
|
|
/* Set return value */
|
|
ret_value = grp;
|
|
|
|
done:
|
|
if (!ret_value)
|
|
if (loc_found && H5G_loc_free(&grp_loc) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, NULL, "can't free location")
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__open_name() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_open
|
|
*
|
|
* Purpose: Opens an existing group. The group should eventually be
|
|
* closed by calling H5G_close().
|
|
*
|
|
* Return: Success: Ptr to a new group.
|
|
*
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Robb Matzke
|
|
* Monday, January 5, 1998
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
H5G_t *
|
|
H5G_open(const H5G_loc_t *loc)
|
|
{
|
|
H5G_t * grp = NULL; /* Group opened */
|
|
H5G_shared_t *shared_fo; /* Shared group object */
|
|
H5G_t * ret_value = NULL; /* Return value */
|
|
|
|
FUNC_ENTER_NOAPI(NULL)
|
|
|
|
/* Check args */
|
|
HDassert(loc);
|
|
|
|
/* Allocate the group structure */
|
|
if (NULL == (grp = H5FL_CALLOC(H5G_t)))
|
|
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate space for group")
|
|
|
|
/* Shallow copy (take ownership) of the group location object */
|
|
if (H5O_loc_copy_shallow(&(grp->oloc), loc->oloc) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, NULL, "can't copy object location")
|
|
if (H5G_name_copy(&(grp->path), loc->path, H5_COPY_SHALLOW) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, NULL, "can't copy path")
|
|
|
|
/* Check if group was already open */
|
|
if ((shared_fo = (H5G_shared_t *)H5FO_opened(grp->oloc.file, grp->oloc.addr)) == NULL) {
|
|
|
|
/* Clear any errors from H5FO_opened() */
|
|
H5E_clear_stack(NULL);
|
|
|
|
/* Open the group object */
|
|
if (H5G__open_oid(grp) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, NULL, "not found")
|
|
|
|
/* Add group to list of open objects in file */
|
|
if (H5FO_insert(grp->oloc.file, grp->oloc.addr, grp->shared, FALSE) < 0) {
|
|
grp->shared = H5FL_FREE(H5G_shared_t, grp->shared);
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, NULL, "can't insert group into list of open objects")
|
|
} /* end if */
|
|
|
|
/* Increment object count for the object in the top file */
|
|
if (H5FO_top_incr(grp->oloc.file, grp->oloc.addr) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINC, NULL, "can't increment object count")
|
|
|
|
/* Set open object count */
|
|
grp->shared->fo_count = 1;
|
|
} /* end if */
|
|
else {
|
|
/* Point to shared group info */
|
|
grp->shared = shared_fo;
|
|
|
|
/* Increment shared reference count */
|
|
shared_fo->fo_count++;
|
|
|
|
/* Check if the object has been opened through the top file yet */
|
|
if (H5FO_top_count(grp->oloc.file, grp->oloc.addr) == 0) {
|
|
/* Open the object through this top file */
|
|
if (H5O_open(&(grp->oloc)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, NULL, "unable to open object header")
|
|
} /* end if */
|
|
|
|
/* Increment object count for the object in the top file */
|
|
if (H5FO_top_incr(grp->oloc.file, grp->oloc.addr) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINC, NULL, "can't increment object count")
|
|
} /* end else */
|
|
|
|
/* Set return value */
|
|
ret_value = grp;
|
|
|
|
done:
|
|
if (!ret_value && grp) {
|
|
H5O_loc_free(&(grp->oloc));
|
|
H5G_name_free(&(grp->path));
|
|
grp = H5FL_FREE(H5G_t, grp);
|
|
} /* end if */
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G_open() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__open_oid
|
|
*
|
|
* Purpose: Opens an existing group. The group should eventually be
|
|
* closed by calling H5G_close().
|
|
*
|
|
* Return: Success: Ptr to a new group.
|
|
*
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Wednesday, March 17, 1999
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
H5G__open_oid(H5G_t *grp)
|
|
{
|
|
hbool_t obj_opened = FALSE;
|
|
herr_t ret_value = SUCCEED;
|
|
|
|
FUNC_ENTER_STATIC
|
|
|
|
/* Check args */
|
|
HDassert(grp);
|
|
|
|
/* Allocate the shared information for the group */
|
|
if (NULL == (grp->shared = H5FL_CALLOC(H5G_shared_t)))
|
|
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
|
|
|
|
/* Grab the object header */
|
|
if (H5O_open(&(grp->oloc)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open group")
|
|
obj_opened = TRUE;
|
|
|
|
/* Check if this object has the right message(s) to be treated as a group */
|
|
if ((H5O_msg_exists(&(grp->oloc), H5O_STAB_ID) <= 0) && (H5O_msg_exists(&(grp->oloc), H5O_LINFO_ID) <= 0))
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "not a group")
|
|
|
|
done:
|
|
if (ret_value < 0) {
|
|
if (obj_opened)
|
|
H5O_close(&(grp->oloc), NULL);
|
|
if (grp->shared)
|
|
grp->shared = H5FL_FREE(H5G_shared_t, grp->shared);
|
|
} /* end if */
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__open_oid() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_close
|
|
*
|
|
* Purpose: Closes the specified group.
|
|
*
|
|
* Return: Non-negative on success/Negative on failure
|
|
*
|
|
* Programmer: Robb Matzke
|
|
* Monday, January 5, 1998
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G_close(H5G_t *grp)
|
|
{
|
|
hbool_t corked; /* Whether the group is corked or not */
|
|
hbool_t file_closed = TRUE; /* H5O_close also closed the file? */
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
|
|
|
/* Check args */
|
|
HDassert(grp && grp->shared);
|
|
HDassert(grp->shared->fo_count > 0);
|
|
|
|
--grp->shared->fo_count;
|
|
|
|
if (0 == grp->shared->fo_count) {
|
|
HDassert(grp != H5G_rootof(H5G_fileof(grp)));
|
|
|
|
/* Uncork cache entries with object address tag */
|
|
if (H5AC_cork(grp->oloc.file, grp->oloc.addr, H5AC__GET_CORKED, &corked) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to retrieve an object's cork status")
|
|
if (corked)
|
|
if (H5AC_cork(grp->oloc.file, grp->oloc.addr, H5AC__UNCORK, NULL) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTUNCORK, FAIL, "unable to uncork an object")
|
|
|
|
/* Remove the group from the list of opened objects in the file */
|
|
if (H5FO_top_decr(grp->oloc.file, grp->oloc.addr) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't decrement count for object")
|
|
if (H5FO_delete(grp->oloc.file, grp->oloc.addr) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't remove group from list of open objects")
|
|
if (H5O_close(&(grp->oloc), &file_closed) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to close")
|
|
|
|
/* Evict group metadata if evicting on close */
|
|
if (!file_closed && H5F_SHARED(grp->oloc.file) && H5F_EVICT_ON_CLOSE(grp->oloc.file)) {
|
|
if (H5AC_flush_tagged_metadata(grp->oloc.file, grp->oloc.addr) < 0)
|
|
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush tagged metadata")
|
|
if (H5AC_evict_tagged_metadata(grp->oloc.file, grp->oloc.addr, FALSE) < 0)
|
|
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to evict tagged metadata")
|
|
} /* end if */
|
|
|
|
/* Free memory */
|
|
grp->shared = H5FL_FREE(H5G_shared_t, grp->shared);
|
|
}
|
|
else {
|
|
/* Decrement the ref. count for this object in the top file */
|
|
if (H5FO_top_decr(grp->oloc.file, grp->oloc.addr) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't decrement count for object")
|
|
|
|
/* Check reference count for this object in the top file */
|
|
if (H5FO_top_count(grp->oloc.file, grp->oloc.addr) == 0) {
|
|
if (H5O_close(&(grp->oloc), NULL) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to close")
|
|
} /* end if */
|
|
else
|
|
/* Free object location (i.e. "unhold" the file if appropriate) */
|
|
if (H5O_loc_free(&(grp->oloc)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "problem attempting to free location")
|
|
|
|
/* If this group is a mount point and the mount point is the last open
|
|
* reference to the group (i.e. fo_count == 1 now), then attempt to
|
|
* close down the file hierarchy
|
|
*/
|
|
if (grp->shared->mounted && grp->shared->fo_count == 1) {
|
|
/* Attempt to close down the file hierarchy */
|
|
if (H5F_try_close(grp->oloc.file, NULL) < 0)
|
|
HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problem attempting file close")
|
|
} /* end if */
|
|
} /* end else */
|
|
|
|
if (H5G_name_free(&(grp->path)) < 0) {
|
|
grp = H5FL_FREE(H5G_t, grp);
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't free group entry name")
|
|
} /* end if */
|
|
|
|
grp = H5FL_FREE(H5G_t, grp);
|
|
|
|
done:
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G_close() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_oloc
|
|
*
|
|
* Purpose: Returns a pointer to the object location for a group.
|
|
*
|
|
* Return: Success: Ptr to group entry
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Robb Matzke
|
|
* Tuesday, March 24, 1998
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
H5O_loc_t *
|
|
H5G_oloc(H5G_t *grp)
|
|
{
|
|
/* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
FUNC_LEAVE_NOAPI(grp ? &(grp->oloc) : NULL)
|
|
} /* end H5G_oloc() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_nameof
|
|
*
|
|
* Purpose: Returns a pointer to the hier. name for a group.
|
|
*
|
|
* Return: Success: Ptr to hier. name
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Monday, September 12, 2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
H5G_name_t *
|
|
H5G_nameof(const H5G_t *grp)
|
|
{
|
|
/* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
FUNC_LEAVE_NOAPI(grp ? &(grp->path) : NULL)
|
|
} /* end H5G_nameof() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_fileof
|
|
*
|
|
* Purpose: Returns the file to which the specified group belongs.
|
|
*
|
|
* Return: Success: File pointer.
|
|
*
|
|
* Failure: NULL
|
|
*
|
|
* Programmer: Robb Matzke
|
|
* Tuesday, March 24, 1998
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
H5F_t *
|
|
H5G_fileof(H5G_t *grp)
|
|
{
|
|
/* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
HDassert(grp);
|
|
|
|
FUNC_LEAVE_NOAPI(grp->oloc.file)
|
|
} /* end H5G_fileof() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_get_shared_count
|
|
*
|
|
* Purpose: Queries the group object's "shared count"
|
|
*
|
|
* Return: Non-negative on success/Negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Tuesday, July 5, 2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G_get_shared_count(H5G_t *grp)
|
|
{
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
/* Check args */
|
|
HDassert(grp && grp->shared);
|
|
|
|
FUNC_LEAVE_NOAPI(grp->shared->fo_count)
|
|
} /* end H5G_get_shared_count() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_mount
|
|
*
|
|
* Purpose: Sets the 'mounted' flag for a group
|
|
*
|
|
* Return: Non-negative on success/Negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Tuesday, July 19, 2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G_mount(H5G_t *grp)
|
|
{
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
/* Check args */
|
|
HDassert(grp && grp->shared);
|
|
HDassert(grp->shared->mounted == FALSE);
|
|
|
|
/* Set the 'mounted' flag */
|
|
grp->shared->mounted = TRUE;
|
|
|
|
FUNC_LEAVE_NOAPI(SUCCEED)
|
|
} /* end H5G_mount() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_mounted
|
|
*
|
|
* Purpose: Retrieves the 'mounted' flag for a group
|
|
*
|
|
* Return: Non-negative on success/Negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Tuesday, July 15, 2008
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
hbool_t
|
|
H5G_mounted(H5G_t *grp)
|
|
{
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
/* Check args */
|
|
HDassert(grp && grp->shared);
|
|
|
|
FUNC_LEAVE_NOAPI(grp->shared->mounted)
|
|
} /* end H5G_mounted() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_unmount
|
|
*
|
|
* Purpose: Resets the 'mounted' flag for a group
|
|
*
|
|
* Return: Non-negative on success/Negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Tuesday, July 19, 2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G_unmount(H5G_t *grp)
|
|
{
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
|
|
|
/* Check args */
|
|
HDassert(grp && grp->shared);
|
|
HDassert(grp->shared->mounted == TRUE);
|
|
|
|
/* Reset the 'mounted' flag */
|
|
grp->shared->mounted = FALSE;
|
|
|
|
FUNC_LEAVE_NOAPI(SUCCEED)
|
|
} /* end H5G_unmount() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__iterate_cb
|
|
*
|
|
* Purpose: Callback function for iterating over links in a group
|
|
*
|
|
* Return: Success: Non-negative
|
|
* Failure: Negative
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Oct 3, 2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
H5G__iterate_cb(const H5O_link_t *lnk, void *_udata)
|
|
{
|
|
H5G_iter_appcall_ud_t *udata = (H5G_iter_appcall_ud_t *)_udata; /* User data for callback */
|
|
herr_t ret_value = H5_ITER_ERROR; /* Return value */
|
|
|
|
FUNC_ENTER_STATIC
|
|
|
|
/* Sanity check */
|
|
HDassert(lnk);
|
|
HDassert(udata);
|
|
|
|
switch (udata->lnk_op.op_type) {
|
|
#ifndef H5_NO_DEPRECATED_SYMBOLS
|
|
case H5G_LINK_OP_OLD:
|
|
/* Make the old-type application callback */
|
|
ret_value = (udata->lnk_op.op_func.op_old)(udata->gid, lnk->name, udata->op_data);
|
|
break;
|
|
#endif /* H5_NO_DEPRECATED_SYMBOLS */
|
|
|
|
case H5G_LINK_OP_NEW: {
|
|
H5L_info2_t info; /* Link info */
|
|
|
|
/* Retrieve the info for the link */
|
|
if (H5G_link_to_info(udata->link_loc, lnk, &info) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5_ITER_ERROR, "unable to get info for link")
|
|
|
|
/* Make the application callback */
|
|
ret_value = (udata->lnk_op.op_func.op_new)(udata->gid, lnk->name, &info, udata->op_data);
|
|
} break;
|
|
|
|
default:
|
|
HDassert(0 && "Unknown link op type?!?");
|
|
} /* end switch */
|
|
|
|
done:
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__iterate_cb() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_iterate
|
|
*
|
|
* Purpose: Private function for iterating over links in a group
|
|
*
|
|
* Return: SUCCEED/FAIL
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Oct 3, 2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G_iterate(H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t skip,
|
|
hsize_t *last_lnk, const H5G_link_iterate_t *lnk_op, void *op_data)
|
|
{
|
|
hid_t gid = H5I_INVALID_HID; /* ID of group to iterate over */
|
|
H5G_t * grp = NULL; /* Pointer to group data structure to iterate over */
|
|
H5G_iter_appcall_ud_t udata; /* User data for callback */
|
|
herr_t ret_value = FAIL; /* Return value */
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
|
|
|
/* Sanity check */
|
|
HDassert(loc);
|
|
HDassert(group_name);
|
|
HDassert(last_lnk);
|
|
HDassert(lnk_op && lnk_op->op_func.op_new);
|
|
|
|
/* Open the group on which to operate. We also create a group ID which
|
|
* we can pass to the application-defined operator.
|
|
*/
|
|
if (NULL == (grp = H5G__open_name(loc, group_name)))
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open group")
|
|
if ((gid = H5VL_wrap_register(H5I_GROUP, grp, TRUE)) < 0)
|
|
HGOTO_ERROR(H5E_ID, H5E_CANTREGISTER, FAIL, "unable to register group")
|
|
|
|
/* Set up user data for callback */
|
|
udata.gid = gid;
|
|
udata.link_loc = &grp->oloc;
|
|
udata.lnk_op = *lnk_op;
|
|
udata.op_data = op_data;
|
|
|
|
/* Call the real group iteration routine */
|
|
if ((ret_value =
|
|
H5G__obj_iterate(&(grp->oloc), idx_type, order, skip, last_lnk, H5G__iterate_cb, &udata)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "error iterating over links")
|
|
|
|
done:
|
|
/* Release the group opened */
|
|
if (gid != H5I_INVALID_HID) {
|
|
if (H5I_dec_app_ref(gid) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "unable to close group")
|
|
}
|
|
else if (grp && H5G_close(grp) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "unable to release group")
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G_iterate() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__free_visit_visited
|
|
*
|
|
* Purpose: Free the key for an object visited during a group traversal
|
|
*
|
|
* Return: Non-negative on success, negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Nov 4, 2007
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
H5G__free_visit_visited(void *item, void H5_ATTR_UNUSED *key, void H5_ATTR_UNUSED *operator_data /*in,out*/)
|
|
{
|
|
FUNC_ENTER_STATIC_NOERR
|
|
|
|
item = H5FL_FREE(H5_obj_t, item);
|
|
|
|
FUNC_LEAVE_NOAPI(SUCCEED)
|
|
} /* end H5G__free_visit_visited() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__visit_cb
|
|
*
|
|
* Purpose: Callback function for recursively visiting links from a group
|
|
*
|
|
* Return: Success: Non-negative
|
|
* Failure: Negative
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Nov 4, 2007
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
H5G__visit_cb(const H5O_link_t *lnk, void *_udata)
|
|
{
|
|
H5G_iter_visit_ud_t *udata = (H5G_iter_visit_ud_t *)_udata; /* User data for callback */
|
|
H5L_info2_t info; /* Link info */
|
|
H5G_loc_t obj_loc; /* Location of object */
|
|
H5G_name_t obj_path; /* Object's group hier. path */
|
|
H5O_loc_t obj_oloc; /* Object's object location */
|
|
hbool_t obj_found = FALSE; /* Object at 'name' found */
|
|
size_t old_path_len = udata->curr_path_len; /* Length of path before appending this link's name */
|
|
size_t link_name_len; /* Length of link's name */
|
|
size_t len_needed; /* Length of path string needed */
|
|
herr_t ret_value = H5_ITER_CONT; /* Return value */
|
|
|
|
FUNC_ENTER_STATIC
|
|
|
|
/* Sanity check */
|
|
HDassert(lnk);
|
|
HDassert(udata);
|
|
|
|
/* Check if we will need more space to store this link's relative path */
|
|
/* ("+2" is for string terminator and possible '/' for group separator later) */
|
|
link_name_len = HDstrlen(lnk->name);
|
|
len_needed = udata->curr_path_len + link_name_len + 2;
|
|
if (len_needed > udata->path_buf_size) {
|
|
void *new_path; /* Pointer to new path buffer */
|
|
|
|
/* Attempt to allocate larger buffer for path */
|
|
if (NULL == (new_path = H5MM_realloc(udata->path, len_needed)))
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOSPACE, H5_ITER_ERROR, "can't allocate path string")
|
|
udata->path = (char *)new_path;
|
|
udata->path_buf_size = len_needed;
|
|
} /* end if */
|
|
|
|
/* Build the link's relative path name */
|
|
HDassert(udata->path[old_path_len] == '\0');
|
|
HDstrncpy(&(udata->path[old_path_len]), lnk->name, link_name_len + 1);
|
|
udata->curr_path_len += link_name_len;
|
|
|
|
/* Construct the link info from the link message */
|
|
if (H5G_link_to_info(udata->curr_loc->oloc, lnk, &info) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5_ITER_ERROR, "unable to get info for link")
|
|
|
|
/* Make the application callback */
|
|
ret_value = (udata->op)(udata->gid, udata->path, &info, udata->op_data);
|
|
|
|
/* Check for doing more work */
|
|
if (ret_value == H5_ITER_CONT && lnk->type == H5L_TYPE_HARD) {
|
|
H5_obj_t obj_pos; /* Object "position" for this object */
|
|
|
|
/* Set up opened group location to fill in */
|
|
obj_loc.oloc = &obj_oloc;
|
|
obj_loc.path = &obj_path;
|
|
H5G_loc_reset(&obj_loc);
|
|
|
|
/* Find the object using the LAPL passed in */
|
|
/* (Correctly handles mounted files) */
|
|
if (H5G_loc_find(udata->curr_loc, lnk->name, &obj_loc /*out*/) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, H5_ITER_ERROR, "object not found")
|
|
obj_found = TRUE;
|
|
|
|
/* Construct unique "position" for this object */
|
|
H5F_GET_FILENO(obj_oloc.file, obj_pos.fileno);
|
|
obj_pos.addr = obj_oloc.addr;
|
|
|
|
/* Check if we've seen the object the link references before */
|
|
if (NULL == H5SL_search(udata->visited, &obj_pos)) {
|
|
H5O_type_t otype; /* Basic object type (group, dataset, etc.) */
|
|
unsigned rc; /* Reference count of object */
|
|
|
|
/* Get the object's reference count and type */
|
|
if (H5O_get_rc_and_type(&obj_oloc, &rc, &otype) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5_ITER_ERROR, "unable to get object info")
|
|
|
|
/* If its ref count is > 1, we add it to the list of visited objects */
|
|
/* (because it could come up again during traversal) */
|
|
if (rc > 1) {
|
|
H5_obj_t *new_node; /* New object node for visited list */
|
|
|
|
/* Allocate new object "position" node */
|
|
if ((new_node = H5FL_MALLOC(H5_obj_t)) == NULL)
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOSPACE, H5_ITER_ERROR, "can't allocate object node")
|
|
|
|
/* Set node information */
|
|
*new_node = obj_pos;
|
|
|
|
/* Add to list of visited objects */
|
|
if (H5SL_insert(udata->visited, new_node, new_node) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, H5_ITER_ERROR,
|
|
"can't insert object node into visited list")
|
|
} /* end if */
|
|
|
|
/* If it's a group, we recurse into it */
|
|
if (otype == H5O_TYPE_GROUP) {
|
|
H5G_loc_t * old_loc = udata->curr_loc; /* Pointer to previous group location info */
|
|
H5_index_t idx_type = udata->idx_type; /* Type of index to use */
|
|
H5O_linfo_t linfo; /* Link info message */
|
|
htri_t linfo_exists; /* Whether the link info message exists */
|
|
|
|
/* Add the path separator to the current path */
|
|
HDassert(udata->path[udata->curr_path_len] == '\0');
|
|
HDstrncpy(&(udata->path[udata->curr_path_len]), "/", (size_t)2);
|
|
udata->curr_path_len++;
|
|
|
|
/* Attempt to get the link info for this group */
|
|
if ((linfo_exists = H5G__obj_get_linfo(&obj_oloc, &linfo)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5_ITER_ERROR, "can't check for link info message")
|
|
if (linfo_exists) {
|
|
/* Check for creation order tracking, if creation order index lookup requested */
|
|
if (idx_type == H5_INDEX_CRT_ORDER) {
|
|
/* Check if creation order is tracked */
|
|
if (!linfo.track_corder)
|
|
/* Switch to name order for this group */
|
|
idx_type = H5_INDEX_NAME;
|
|
} /* end if */
|
|
else
|
|
HDassert(idx_type == H5_INDEX_NAME);
|
|
} /* end if */
|
|
else {
|
|
/* Can only perform name lookups on groups with symbol tables */
|
|
if (idx_type != H5_INDEX_NAME)
|
|
/* Switch to name order for this group */
|
|
idx_type = H5_INDEX_NAME;
|
|
} /* end if */
|
|
|
|
/* Point to this group's location info */
|
|
udata->curr_loc = &obj_loc;
|
|
|
|
/* Iterate over links in group */
|
|
ret_value = H5G__obj_iterate(&obj_oloc, idx_type, udata->order, (hsize_t)0, NULL,
|
|
H5G__visit_cb, udata);
|
|
|
|
/* Restore location */
|
|
udata->curr_loc = old_loc;
|
|
} /* end if */
|
|
} /* end if */
|
|
} /* end if */
|
|
|
|
done:
|
|
/* Reset path back to incoming path */
|
|
udata->path[old_path_len] = '\0';
|
|
udata->curr_path_len = old_path_len;
|
|
|
|
/* Release resources */
|
|
if (obj_found && H5G_loc_free(&obj_loc) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, H5_ITER_ERROR, "can't free location")
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__visit_cb() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_visit
|
|
*
|
|
* Purpose: Recursively visit all the links in a group and all
|
|
* the groups that are linked to from that group. Links within
|
|
* each group are visited according to the order within the
|
|
* specified index (unless the specified index does not exist for
|
|
* a particular group, then the "name" index is used).
|
|
*
|
|
* NOTE: Each _link_ reachable from the initial group will only be
|
|
* visited once. However, because an object may be reached from
|
|
* more than one link, the visitation may call the application's
|
|
* callback with more than one link that points to a particular
|
|
* _object_.
|
|
*
|
|
* Return: Success: The return value of the first operator that
|
|
* returns non-zero, or zero if all members were
|
|
* processed with no operator returning non-zero.
|
|
*
|
|
* Failure: Negative if something goes wrong within the
|
|
* library, or the negative value returned by one
|
|
* of the operators.
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G_visit(H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order,
|
|
H5L_iterate2_t op, void *op_data)
|
|
{
|
|
H5G_iter_visit_ud_t udata; /* User data for callback */
|
|
H5O_linfo_t linfo; /* Link info message */
|
|
htri_t linfo_exists; /* Whether the link info message exists */
|
|
hid_t gid = H5I_INVALID_HID; /* Group ID */
|
|
H5G_t * grp = NULL; /* Group opened */
|
|
H5G_loc_t start_loc; /* Location of starting group */
|
|
unsigned rc; /* Reference count of object */
|
|
herr_t ret_value = FAIL; /* Return value */
|
|
|
|
/* Portably clear udata struct (before FUNC_ENTER) */
|
|
HDmemset(&udata, 0, sizeof(udata));
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
|
|
|
/* Check args */
|
|
if (!loc)
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "loc parameter cannot be NULL")
|
|
|
|
/* Open the group to begin visiting within */
|
|
if (NULL == (grp = H5G__open_name(loc, group_name)))
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open group")
|
|
|
|
/* Register an ID for the starting group */
|
|
if ((gid = H5VL_wrap_register(H5I_GROUP, grp, TRUE)) < 0)
|
|
HGOTO_ERROR(H5E_ID, H5E_CANTREGISTER, FAIL, "unable to register group")
|
|
|
|
/* Get the location of the starting group */
|
|
if (H5G_loc(gid, &start_loc) < 0)
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
|
|
|
|
/* Set up user data */
|
|
udata.gid = gid;
|
|
udata.curr_loc = &start_loc;
|
|
udata.idx_type = idx_type;
|
|
udata.order = order;
|
|
udata.op = op;
|
|
udata.op_data = op_data;
|
|
|
|
/* Allocate space for the path name */
|
|
if (NULL == (udata.path = H5MM_strdup("")))
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOSPACE, FAIL, "can't allocate path name buffer")
|
|
udata.path_buf_size = 1;
|
|
udata.curr_path_len = 0;
|
|
|
|
/* Create skip list to store visited object information */
|
|
if ((udata.visited = H5SL_create(H5SL_TYPE_OBJ, NULL)) == NULL)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTCREATE, FAIL, "can't create skip list for visited objects")
|
|
|
|
/* Get the group's reference count */
|
|
if (H5O_get_rc_and_type(&grp->oloc, &rc, NULL) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to get object info")
|
|
|
|
/* If its ref count is > 1, we add it to the list of visited objects */
|
|
/* (because it could come up again during traversal) */
|
|
if (rc > 1) {
|
|
H5_obj_t *obj_pos; /* New object node for visited list */
|
|
|
|
/* Allocate new object "position" node */
|
|
if ((obj_pos = H5FL_MALLOC(H5_obj_t)) == NULL)
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOSPACE, FAIL, "can't allocate object node")
|
|
|
|
/* Construct unique "position" for this object */
|
|
H5F_GET_FILENO(grp->oloc.file, obj_pos->fileno);
|
|
obj_pos->addr = grp->oloc.addr;
|
|
|
|
/* Add to list of visited objects */
|
|
if (H5SL_insert(udata.visited, obj_pos, obj_pos) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "can't insert object node into visited list")
|
|
} /* end if */
|
|
|
|
/* Attempt to get the link info for this group */
|
|
if ((linfo_exists = H5G__obj_get_linfo(&(grp->oloc), &linfo)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message")
|
|
if (linfo_exists) {
|
|
/* Check for creation order tracking, if creation order index lookup requested */
|
|
if (idx_type == H5_INDEX_CRT_ORDER) {
|
|
/* Check if creation order is tracked */
|
|
if (!linfo.track_corder)
|
|
/* Switch to name order for this group */
|
|
idx_type = H5_INDEX_NAME;
|
|
} /* end if */
|
|
else
|
|
HDassert(idx_type == H5_INDEX_NAME);
|
|
} /* end if */
|
|
else {
|
|
/* Can only perform name lookups on groups with symbol tables */
|
|
if (idx_type != H5_INDEX_NAME)
|
|
/* Switch to name order for this group */
|
|
idx_type = H5_INDEX_NAME;
|
|
} /* end if */
|
|
|
|
/* Call the link iteration routine */
|
|
if ((ret_value =
|
|
H5G__obj_iterate(&(grp->oloc), idx_type, order, (hsize_t)0, NULL, H5G__visit_cb, &udata)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "can't visit links")
|
|
|
|
done:
|
|
/* Release user data resources */
|
|
H5MM_xfree(udata.path);
|
|
if (udata.visited)
|
|
H5SL_destroy(udata.visited, H5G__free_visit_visited, NULL);
|
|
|
|
/* Release the group opened */
|
|
if (gid != H5I_INVALID_HID) {
|
|
if (H5I_dec_app_ref(gid) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "unable to close group")
|
|
}
|
|
else if (grp && H5G_close(grp) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "unable to release group")
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G_visit() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G_get_create_plist
|
|
*
|
|
* Purpose: Private function for H5Gget_create_plist
|
|
*
|
|
* Return: Success: ID for a copy of the group creation
|
|
* property list. The property list ID should be
|
|
* released by calling H5Pclose().
|
|
*
|
|
* Failure: H5I_INVALID_HID
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* Tuesday, October 25, 2005
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
hid_t
|
|
H5G_get_create_plist(const H5G_t *grp)
|
|
{
|
|
H5O_linfo_t linfo; /* Link info message */
|
|
htri_t ginfo_exists;
|
|
htri_t linfo_exists;
|
|
htri_t pline_exists;
|
|
H5P_genplist_t *gcpl_plist;
|
|
H5P_genplist_t *new_plist;
|
|
hid_t new_gcpl_id = H5I_INVALID_HID;
|
|
hid_t ret_value = H5I_INVALID_HID;
|
|
|
|
FUNC_ENTER_NOAPI(H5I_INVALID_HID)
|
|
|
|
/* Copy the default group creation property list */
|
|
if (NULL == (gcpl_plist = (H5P_genplist_t *)H5I_object(H5P_LST_GROUP_CREATE_ID_g)))
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "can't get default group creation property list")
|
|
if ((new_gcpl_id = H5P_copy_plist(gcpl_plist, TRUE)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5I_INVALID_HID, "unable to copy the creation property list")
|
|
if (NULL == (new_plist = (H5P_genplist_t *)H5I_object(new_gcpl_id)))
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "can't get property list")
|
|
|
|
/* Retrieve any object creation properties */
|
|
if (H5O_get_create_plist(&grp->oloc, new_plist) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5I_INVALID_HID, "can't get object creation info")
|
|
|
|
/* Check for the group having a group info message */
|
|
if ((ginfo_exists = H5O_msg_exists(&(grp->oloc), H5O_GINFO_ID)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, H5I_INVALID_HID, "unable to read object header")
|
|
if (ginfo_exists) {
|
|
H5O_ginfo_t ginfo; /* Group info message */
|
|
|
|
/* Read the group info */
|
|
if (NULL == H5O_msg_read(&(grp->oloc), H5O_GINFO_ID, &ginfo))
|
|
HGOTO_ERROR(H5E_SYM, H5E_BADMESG, H5I_INVALID_HID, "can't get group info")
|
|
|
|
/* Set the group info for the property list */
|
|
if (H5P_set(new_plist, H5G_CRT_GROUP_INFO_NAME, &ginfo) < 0)
|
|
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, H5I_INVALID_HID, "can't set group info")
|
|
} /* end if */
|
|
|
|
/* Check for the group having a link info message */
|
|
if ((linfo_exists = H5G__obj_get_linfo(&(grp->oloc), &linfo)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, H5I_INVALID_HID, "unable to read object header")
|
|
if (linfo_exists) {
|
|
/* Set the link info for the property list */
|
|
if (H5P_set(new_plist, H5G_CRT_LINK_INFO_NAME, &linfo) < 0)
|
|
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, H5I_INVALID_HID, "can't set link info")
|
|
} /* end if */
|
|
|
|
/* Check for the group having a pipeline message */
|
|
if ((pline_exists = H5O_msg_exists(&(grp->oloc), H5O_PLINE_ID)) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5I_INVALID_HID, "unable to read object header")
|
|
if (pline_exists) {
|
|
H5O_pline_t pline; /* Pipeline message */
|
|
|
|
/* Read the pipeline */
|
|
if (NULL == H5O_msg_read(&(grp->oloc), H5O_PLINE_ID, &pline))
|
|
HGOTO_ERROR(H5E_SYM, H5E_BADMESG, H5I_INVALID_HID, "can't get link pipeline")
|
|
|
|
/* Set the pipeline for the property list */
|
|
if (H5P_poke(new_plist, H5O_CRT_PIPELINE_NAME, &pline) < 0)
|
|
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, H5I_INVALID_HID, "can't set link pipeline")
|
|
} /* end if */
|
|
|
|
/* Set the return value */
|
|
ret_value = new_gcpl_id;
|
|
|
|
done:
|
|
if (ret_value < 0) {
|
|
if (new_gcpl_id > 0)
|
|
if (H5I_dec_app_ref(new_gcpl_id) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTDEC, H5I_INVALID_HID, "can't free")
|
|
} /* end if */
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G_get_create_plist() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__get_info_by_name
|
|
*
|
|
* Purpose: Internal routine to retrieve the info for a group, by name.
|
|
*
|
|
* Return: SUCCEED/FAIL
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* December 18, 2017
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G__get_info_by_name(const H5G_loc_t *loc, const char *name, H5G_info_t *grp_info)
|
|
{
|
|
H5G_loc_t grp_loc; /* Location used to open group */
|
|
H5G_name_t grp_path; /* Opened object group hier. path */
|
|
H5O_loc_t grp_oloc; /* Opened object object location */
|
|
hbool_t loc_found = FALSE; /* Location at 'name' found */
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
|
|
|
FUNC_ENTER_PACKAGE
|
|
|
|
/* Check arguments */
|
|
HDassert(loc);
|
|
HDassert(grp_info);
|
|
|
|
/* Set up opened group location to fill in */
|
|
grp_loc.oloc = &grp_oloc;
|
|
grp_loc.path = &grp_path;
|
|
H5G_loc_reset(&grp_loc);
|
|
|
|
/* Find the group object */
|
|
if (H5G_loc_find(loc, name, &grp_loc /*out*/) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found")
|
|
loc_found = TRUE;
|
|
|
|
/* Retrieve the group's information */
|
|
if (H5G__obj_info(grp_loc.oloc, grp_info /*out*/) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve group info")
|
|
|
|
done:
|
|
/* Clean up */
|
|
if (loc_found && H5G_loc_free(&grp_loc) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__get_info_by_name() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: H5G__get_info_by_idx
|
|
*
|
|
* Purpose: Internal routine to retrieve the info for a group, by index.
|
|
*
|
|
* Return: SUCCEED/FAIL
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
* December 18, 2017
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
H5G__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order,
|
|
hsize_t n, H5G_info_t *grp_info)
|
|
{
|
|
H5G_loc_t grp_loc; /* Location used to open group */
|
|
H5G_name_t grp_path; /* Opened object group hier. path */
|
|
H5O_loc_t grp_oloc; /* Opened object object location */
|
|
hbool_t loc_found = FALSE; /* Location at 'name' found */
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
|
|
|
FUNC_ENTER_PACKAGE
|
|
|
|
/* Check arguments */
|
|
HDassert(loc);
|
|
HDassert(grp_info);
|
|
|
|
/* Set up opened group location to fill in */
|
|
grp_loc.oloc = &grp_oloc;
|
|
grp_loc.path = &grp_path;
|
|
H5G_loc_reset(&grp_loc);
|
|
|
|
/* Find the object's location, according to the order in the index */
|
|
if (H5G_loc_find_by_idx(loc, group_name, idx_type, order, n, &grp_loc /*out*/) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found")
|
|
loc_found = TRUE;
|
|
|
|
/* Retrieve the group's information */
|
|
if (H5G__obj_info(grp_loc.oloc, grp_info /*out*/) < 0)
|
|
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve group info")
|
|
|
|
done:
|
|
/* Clean up */
|
|
if (loc_found && H5G_loc_free(&grp_loc) < 0)
|
|
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
} /* end H5G__get_info_by_idx() */
|