mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-27 08:01:04 +08:00
4cb6c01d7f
h5diff and h5repack changes
Description:
h5diff
introduced the following four modes of output:
Normal mode: print the number of differences found and where they occured
Report mode: print the above plus the differences
Verbose mode: print the above plus a list of objects and warnings
Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found)
h5repack
added an extra parameter for SZIP filter (coding method)
the new syntax is
-f SZIP=<pixels per block,coding>
(pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN')
Example of use:
./h5repack -i file1 -o file2 -f SZIP=8,NN -v
updated usage messages, test scripts and files accordingly
Solution:
Platforms tested:
linux
AIX
solaris
Misc. update:
1033 lines
35 KiB
C
1033 lines
35 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#include "hdf5.h"
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#include "h5test.h"
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#include "h5repack.h"
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/*-------------------------------------------------------------------------
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* Function: write_attr_in
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*
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* Purpose: write attributes in LOC_ID (dataset, group, named datatype)
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*
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* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
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*
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* Date: November 12, 2003
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*
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*-------------------------------------------------------------------------
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*/
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void write_attr_in(hid_t loc_id,
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const char* dset_name, /* for saving reference to dataset*/
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hid_t fid, /* for reference create */
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int make_diffs /* flag to modify data buffers */)
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{
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/* Compound datatype */
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typedef struct s_t
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{
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char a;
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double b;
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} s_t;
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typedef enum
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{
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RED,
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GREEN
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} e_t;
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hid_t attr_id;
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hid_t space_id;
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hid_t type_id;
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herr_t status;
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int val, i, j, k, n;
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float f;
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/* create 1D attributes with dimension [2], 2 elements */
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hsize_t dims[1]={2};
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char buf1[2][2]= {"ab","de"}; /* string */
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char buf2[2]= {1,2}; /* bitfield, opaque */
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s_t buf3[2]= {{1,2},{3,4}}; /* compound */
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hobj_ref_t buf4[2]; /* reference */
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e_t buf45[2]= {RED,RED}; /* enum */
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hvl_t buf5[2]; /* vlen */
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hsize_t dimarray[1]={3}; /* array dimension */
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int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
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int buf7[2]= {1,2}; /* integer */
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float buf8[2]= {1,2}; /* float */
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/* create 2D attributes with dimension [3][2], 6 elements */
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hsize_t dims2[2]={3,2};
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char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */
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char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
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s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
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hobj_ref_t buf42[3][2]; /* reference */
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e_t buf452[3][2]; /* enum */
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hvl_t buf52[3][2]; /* vlen */
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int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
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int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
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float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
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/* create 3D attributes with dimension [4][3][2], 24 elements */
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hsize_t dims3[3]={4,3,2};
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char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
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"rs","tu","vw","xz","AB","CD","EF","GH",
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"IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
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char buf23[4][3][2]; /* bitfield, opaque */
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s_t buf33[4][3][2]; /* compound */
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hobj_ref_t buf43[4][3][2]; /* reference */
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e_t buf453[4][3][2]; /* enum */
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hvl_t buf53[4][3][2]; /* vlen */
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int buf63[24][3]; /* array */
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int buf73[4][3][2]; /* integer */
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float buf83[4][3][2]; /* float */
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/*-------------------------------------------------------------------------
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* 1D attributes
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*-------------------------------------------------------------------------
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*/
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/*-------------------------------------------------------------------------
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* H5T_STRING
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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for (j=0; j<2; j++)
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{
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buf1[i][j]='z';
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}
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}
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/*
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buf1[2][2]= {"ab","de"};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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Attribute: <string> and <string>
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position string of </g1> string of </g1> difference
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------------------------------------------------------------
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[ 0 ] a z
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[ 0 ] b z
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[ 1 ] d z
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[ 1 ] e z
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*/
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type_id = H5Tcopy(H5T_C_S1);
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status = H5Tset_size(type_id, 2);
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make_attr(loc_id,1,dims,"string",type_id,buf1);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_BITFIELD
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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buf2[i]=buf2[1]=0;
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}
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/*
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buf2[2]= {1,2};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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Attribute: <bitfield> and <bitfield>
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position bitfield of </g1> bitfield of </g1> difference
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position opaque of </g1> opaque of </g1> difference
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------------------------------------------------------------
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[ 0 ] 1 0 1
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[ 1 ] 2 0 2
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*/
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type_id = H5Tcopy(H5T_STD_B8LE);
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make_attr(loc_id,1,dims,"bitfield",type_id,buf2);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_OPAQUE
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*-------------------------------------------------------------------------
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*/
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/*
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buf2[2]= {1,2};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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Attribute: <opaque> and <opaque>
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position opaque of </g1> opaque of </g1> difference
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position opaque of </g1> opaque of </g1> difference
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------------------------------------------------------------
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[ 0 ] 1 0 1
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[ 1 ] 2 0 2
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*/
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type_id = H5Tcreate(H5T_OPAQUE, 1);
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status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
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make_attr(loc_id,1,dims,"opaque",type_id,buf2);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_COMPOUND
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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{
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buf3[i].a=0; buf3[i].b=0;
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}
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}
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/*
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buf3[2]= {{1,2},{3,4}};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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Attribute: <compound> and <compound>
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position compound of </g1> compound of </g1> difference
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------------------------------------------------------------
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[ 0 ] 1 5 4
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[ 0 ] 2 5 3
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[ 1 ] 3 5 2
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[ 1 ] 4 5 1
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*/
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type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
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H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
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H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
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make_attr(loc_id,1,dims,"compound",type_id,buf3);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_REFERENCE
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*-------------------------------------------------------------------------
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*/
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/* object references ( H5R_OBJECT */
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if (dset_name)
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{
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status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1);
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status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1);
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make_attr(loc_id,1,dims,"reference to object",H5T_STD_REF_OBJ,buf4);
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}
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/*-------------------------------------------------------------------------
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* H5T_ENUM
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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{
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buf45[i]=GREEN;
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}
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}
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/*
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buf45[2]= {RED,RED};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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Attribute: <enum> and <enum>
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position enum of </g1> enum of </g1> difference
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------------------------------------------------------------
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[ 0 ] RED GREEN
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[ 1 ] RED GREEN
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*/
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type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
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H5Tenum_insert(type_id, "RED", (val = 0, &val));
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H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
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make_attr(loc_id,1,dims,"enum",type_id,buf45);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_VLEN
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*-------------------------------------------------------------------------
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*/
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/* Allocate and initialize VL dataset to write */
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buf5[0].len = 1;
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buf5[0].p = malloc( 1 * sizeof(int));
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((int *)buf5[0].p)[0]=1;
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buf5[1].len = 2;
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buf5[1].p = malloc( 2 * sizeof(int));
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((int *)buf5[1].p)[0]=2;
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((int *)buf5[1].p)[1]=3;
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if (make_diffs)
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{
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((int *)buf5[0].p)[0]=0;
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((int *)buf5[1].p)[0]=0;
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((int *)buf5[1].p)[1]=0;
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}
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/*
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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position vlen of </g1> vlen of </g1> difference
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------------------------------------------------------------
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[ 0 ] 1 0 1
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[ 1 ] 2 0 2
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[ 1 ] 3 0 3
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*/
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space_id = H5Screate_simple(1,dims,NULL);
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type_id = H5Tvlen_create(H5T_NATIVE_INT);
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attr_id = H5Acreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT);
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status = H5Awrite(attr_id,type_id,buf5);
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assert(status>=0);
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status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5);
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assert(status>=0);
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status = H5Aclose(attr_id);
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status = H5Tclose(type_id);
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status = H5Sclose(space_id);
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/*-------------------------------------------------------------------------
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* H5T_ARRAY
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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for (j=0; j<3; j++)
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{
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buf6[i][j]=0;
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}
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}
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/*
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buf6[2][3]= {{1,2,3},{4,5,6}};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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Attribute: <array> and <array>
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position array of </g1> array of </g1> difference
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------------------------------------------------------------
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[ 0 ] 1 0 1
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[ 0 ] 2 0 2
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[ 0 ] 3 0 3
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[ 1 ] 4 0 4
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[ 1 ] 5 0 5
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[ 1 ] 6 0 6
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*/
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type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
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make_attr(loc_id,1,dims,"array",type_id,buf6);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_INTEGER and H5T_FLOAT
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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{
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buf7[i]=0;
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buf8[i]=0;
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}
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}
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/*
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buf7[2]= {1,2};
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buf8[2]= {1,2};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Group: </g1> and </g1>
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position integer of </g1> integer of </g1> difference
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------------------------------------------------------------
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[ 0 ] 1 0 1
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[ 1 ] 2 0 2
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position float of </g1> float of </g1> difference
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------------------------------------------------------------
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[ 0 ] 1 0 1
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[ 1 ] 2 0 2
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*/
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make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
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make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
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/*-------------------------------------------------------------------------
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* 2D attributes
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*-------------------------------------------------------------------------
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*/
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/*-------------------------------------------------------------------------
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* H5T_STRING
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf12, 'z', sizeof buf12);
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}
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/*
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buf12[6][2]= {"ab","cd","ef","gh","ij","kl"};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Attribute: <string2D> and <string2D>
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position string2D of </g1> string2D of </g1> difference
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------------------------------------------------------------
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[ 0 0 ] a z
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[ 0 0 ] b z
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[ 0 1 ] c z
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[ 0 1 ] d z
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[ 1 0 ] e z
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[ 1 0 ] f z
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[ 1 1 ] g z
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[ 1 1 ] h z
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[ 2 0 ] i z
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[ 2 0 ] j z
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[ 2 1 ] k z
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[ 2 1 ] l z
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*/
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type_id = H5Tcopy(H5T_C_S1);
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status = H5Tset_size(type_id, 2);
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make_attr(loc_id,2,dims2,"string2D",type_id,buf12);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_BITFIELD
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf22,0,sizeof buf22);
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}
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/*
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buf22[3][2]= {{1,2},{3,4},{5,6}};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Attribute: <bitfield2D> and <bitfield2D>
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position bitfield2D of </g1> bitfield2D of </g1> difference
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------------------------------------------------------------
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[ 0 0 ] 1 0 1
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[ 0 1 ] 2 0 2
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[ 1 0 ] 3 0 3
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[ 1 1 ] 4 0 4
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[ 2 0 ] 5 0 5
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[ 2 1 ] 6 0 6
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*/
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type_id = H5Tcopy(H5T_STD_B8LE);
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make_attr(loc_id,2,dims2,"bitfield2D",type_id,buf22);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_OPAQUE
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*-------------------------------------------------------------------------
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*/
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/*
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buf22[3][2]= {{1,2},{3,4},{5,6}};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Attribute: <opaque2D> and <opaque2D>
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position opaque2D of </g1> opaque2D of </g1> difference
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------------------------------------------------------------
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[ 0 0 ] 1 0 1
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[ 0 1 ] 2 0 2
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[ 1 0 ] 3 0 3
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[ 1 1 ] 4 0 4
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[ 2 0 ] 5 0 5
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[ 2 1 ] 6 0 6
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*/
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type_id = H5Tcreate(H5T_OPAQUE, 1);
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status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
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make_attr(loc_id,2,dims2,"opaque2D",type_id,buf22);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_COMPOUND
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf32,0,sizeof buf32);
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}
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|
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/*
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buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}};
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$h5diff file7.h5 file6.h5 g1 g1 -v
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Attribute: <opaque2D> and <opaque2D>
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position opaque2D of </g1> opaque2D of </g1> difference
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------------------------------------------------------------
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[ 0 0 ] 1 0 1
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[ 0 1 ] 2 0 2
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[ 1 0 ] 3 0 3
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[ 1 1 ] 4 0 4
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[ 2 0 ] 5 0 5
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[ 2 1 ] 6 0 6
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*/
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type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
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H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
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H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
|
|
make_attr(loc_id,2,dims2,"compound2D",type_id,buf32);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_REFERENCE
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
/* Create references to dataset */
|
|
if (dset_name)
|
|
{
|
|
for (i = 0; i < 3; i++) {
|
|
for (j = 0; j < 2; j++) {
|
|
status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1);
|
|
}
|
|
}
|
|
make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_ENUM
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
for (i=0; i<3; i++)
|
|
for (j=0; j<2; j++)
|
|
{
|
|
if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
|
|
}
|
|
|
|
/*
|
|
Attribute: <enum2D> and <enum2D>
|
|
position enum2D of </g1> enum2D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 ] RED GREEN
|
|
[ 0 1 ] RED GREEN
|
|
[ 1 0 ] RED GREEN
|
|
[ 1 1 ] RED GREEN
|
|
[ 2 0 ] RED GREEN
|
|
[ 2 1 ] RED GREEN
|
|
*/
|
|
|
|
type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
|
|
H5Tenum_insert(type_id, "RED", (val = 0, &val));
|
|
H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
|
|
make_attr(loc_id,2,dims2,"enum2D",type_id,buf452);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_VLEN
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
/* Allocate and initialize VL dataset to write */
|
|
n=0;
|
|
for (i = 0; i < 3; i++) {
|
|
for (j = 0; j < 2; j++) {
|
|
int l;
|
|
buf52[i][j].p = malloc((i + 1) * sizeof(int));
|
|
buf52[i][j].len = i + 1;
|
|
for (l = 0; l < i + 1; l++)
|
|
if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
|
|
else ((int *)buf52[i][j].p)[l] = n++;
|
|
}
|
|
}
|
|
|
|
/*
|
|
position vlen2D of </g1> vlen2D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 1 ] 1 0 1
|
|
[ 1 0 ] 2 0 2
|
|
[ 1 0 ] 3 0 3
|
|
[ 1 1 ] 4 0 4
|
|
[ 1 1 ] 5 0 5
|
|
[ 2 0 ] 6 0 6
|
|
[ 2 0 ] 7 0 7
|
|
[ 2 0 ] 8 0 8
|
|
[ 2 1 ] 9 0 9
|
|
[ 2 1 ] 10 0 10
|
|
[ 2 1 ] 11 0 11
|
|
*/
|
|
|
|
space_id = H5Screate_simple(2,dims2,NULL);
|
|
type_id = H5Tvlen_create(H5T_NATIVE_INT);
|
|
attr_id = H5Acreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT);
|
|
status = H5Awrite(attr_id,type_id,buf52);
|
|
assert(status>=0);
|
|
status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52);
|
|
assert(status>=0);
|
|
status = H5Aclose(attr_id);
|
|
status = H5Tclose(type_id);
|
|
status = H5Sclose(space_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_ARRAY
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
if (make_diffs)
|
|
{
|
|
memset(buf62,0,sizeof buf62);
|
|
}
|
|
/*
|
|
buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}};
|
|
$h5diff file7.h5 file6.h5 g1 g1 -v
|
|
Group: </g1> and </g1>
|
|
Attribute: <array2D> and <array2D>
|
|
position array2D of </g1> array2D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 ] 1 0 1
|
|
[ 0 0 ] 2 0 2
|
|
[ 0 0 ] 3 0 3
|
|
[ 0 1 ] 4 0 4
|
|
[ 0 1 ] 5 0 5
|
|
[ 0 1 ] 6 0 6
|
|
[ 1 0 ] 7 0 7
|
|
[ 1 0 ] 8 0 8
|
|
[ 1 0 ] 9 0 9
|
|
[ 1 1 ] 10 0 10
|
|
[ 1 1 ] 11 0 11
|
|
[ 1 1 ] 12 0 12
|
|
[ 2 0 ] 13 0 13
|
|
[ 2 0 ] 14 0 14
|
|
[ 2 0 ] 15 0 15
|
|
[ 2 1 ] 16 0 16
|
|
[ 2 1 ] 17 0 17
|
|
[ 2 1 ] 18 0 18
|
|
*/
|
|
type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
|
|
make_attr(loc_id,2,dims2,"array2D",type_id,buf62);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_INTEGER and H5T_FLOAT
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
if (make_diffs)
|
|
{
|
|
memset(buf72,0,sizeof buf72);
|
|
memset(buf82,0,sizeof buf82);
|
|
}
|
|
/*
|
|
Attribute: <integer2D> and <integer2D>
|
|
position integer2D of </g1> integer2D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 ] 1 0 1
|
|
[ 0 1 ] 2 0 2
|
|
[ 1 0 ] 3 0 3
|
|
[ 1 1 ] 4 0 4
|
|
[ 2 0 ] 5 0 5
|
|
[ 2 1 ] 6 0 6
|
|
6 differences found
|
|
Attribute: <float2D> and <float2D>
|
|
position float2D of </g1> float2D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 ] 1 0 1
|
|
[ 0 1 ] 2 0 2
|
|
[ 1 0 ] 3 0 3
|
|
[ 1 1 ] 4 0 4
|
|
[ 2 0 ] 5 0 5
|
|
[ 2 1 ] 6 0 6
|
|
*/
|
|
|
|
make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72);
|
|
make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* 3D attributes
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_STRING
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
if (make_diffs)
|
|
{
|
|
memset(buf13,'z',sizeof buf13);
|
|
}
|
|
|
|
/*
|
|
buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
|
|
"rs","tu","vw","xz","AB","CD","EF","GH",
|
|
"IJ","KL","MN","PQ","RS","TU","VW","XZ"};
|
|
|
|
Attribute: <string3D> and <string3D>
|
|
position string3D of </g1> string3D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 0 ] a z
|
|
[ 0 0 0 ] b z
|
|
[ 0 0 1 ] c z
|
|
[ 0 0 1 ] d z
|
|
[ 0 1 0 ] e z
|
|
[ 0 1 0 ] f z
|
|
[ 0 1 1 ] g z
|
|
[ 0 1 1 ] h z
|
|
[ 0 2 0 ] i z
|
|
[ 0 2 0 ] j z
|
|
[ 0 2 1 ] k z
|
|
[ 0 2 1 ] l z
|
|
[ 1 0 0 ] m z
|
|
[ 1 0 0 ] n z
|
|
[ 1 0 1 ] p z
|
|
[ 1 0 1 ] q z
|
|
[ 1 1 0 ] r z
|
|
[ 1 1 0 ] s z
|
|
[ 1 1 1 ] t z
|
|
[ 1 1 1 ] u z
|
|
[ 1 2 0 ] v z
|
|
[ 1 2 0 ] w z
|
|
[ 1 2 1 ] x z
|
|
[ 2 0 0 ] A z
|
|
[ 2 0 0 ] B z
|
|
[ 2 0 1 ] C z
|
|
[ 2 0 1 ] D z
|
|
[ 2 1 0 ] E z
|
|
[ 2 1 0 ] F z
|
|
[ 2 1 1 ] G z
|
|
[ 2 1 1 ] H z
|
|
[ 2 2 0 ] I z
|
|
[ 2 2 0 ] J z
|
|
[ 2 2 1 ] K z
|
|
[ 2 2 1 ] L z
|
|
[ 3 0 0 ] M z
|
|
[ 3 0 0 ] N z
|
|
[ 3 0 1 ] P z
|
|
[ 3 0 1 ] Q z
|
|
[ 3 1 0 ] R z
|
|
[ 3 1 0 ] S z
|
|
[ 3 1 1 ] T z
|
|
[ 3 1 1 ] U z
|
|
[ 3 2 0 ] V z
|
|
[ 3 2 0 ] W z
|
|
[ 3 2 1 ] X z
|
|
[ 3 2 1 ] Z z
|
|
*/
|
|
|
|
type_id = H5Tcopy(H5T_C_S1);
|
|
status = H5Tset_size(type_id, 2);
|
|
make_attr(loc_id,3,dims3,"string3D",type_id,buf13);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_BITFIELD
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
n=1;
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
if (make_diffs) buf23[i][j][k]=0;
|
|
else buf23[i][j][k]=n++;
|
|
}
|
|
}
|
|
}
|
|
|
|
/*
|
|
position bitfield3D of </g1> bitfield3D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 0 ] 1 0 1
|
|
[ 0 0 1 ] 2 0 2
|
|
[ 0 1 0 ] 3 0 3
|
|
[ 0 1 1 ] 4 0 4
|
|
[ 0 2 0 ] 5 0 5
|
|
[ 0 2 1 ] 6 0 6
|
|
[ 1 0 0 ] 7 0 7
|
|
[ 1 0 1 ] 8 0 8
|
|
[ 1 1 0 ] 9 0 9
|
|
[ 1 1 1 ] 10 0 10
|
|
[ 1 2 0 ] 11 0 11
|
|
[ 1 2 1 ] 12 0 12
|
|
[ 2 0 0 ] 13 0 13
|
|
[ 2 0 1 ] 14 0 14
|
|
[ 2 1 0 ] 15 0 15
|
|
[ 2 1 1 ] 16 0 16
|
|
[ 2 2 0 ] 17 0 17
|
|
[ 2 2 1 ] 18 0 18
|
|
[ 3 0 0 ] 19 0 19
|
|
[ 3 0 1 ] 20 0 20
|
|
[ 3 1 0 ] 21 0 21
|
|
[ 3 1 1 ] 22 0 22
|
|
[ 3 2 0 ] 23 0 23
|
|
[ 3 2 1 ] 24 0 24
|
|
*/
|
|
|
|
type_id = H5Tcopy(H5T_STD_B8LE);
|
|
make_attr(loc_id,3,dims3,"bitfield3D",type_id,buf23);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_OPAQUE
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
type_id = H5Tcreate(H5T_OPAQUE, 1);
|
|
status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
|
|
make_attr(loc_id,3,dims3,"opaque3D",type_id,buf23);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_COMPOUND
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
n=1;
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
if (make_diffs) {
|
|
buf33[i][j][k].a=0;
|
|
buf33[i][j][k].b=0;
|
|
}
|
|
else {
|
|
buf33[i][j][k].a=n++;
|
|
buf33[i][j][k].b=n++;
|
|
}
|
|
}
|
|
}
|
|
}
|
|
/*position compound3D of </g1> compound3D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 0 ] 1 0 1
|
|
[ 0 0 0 ] 2 0 2
|
|
[ 0 0 1 ] 3 0 3
|
|
[ 0 0 1 ] 4 0 4
|
|
[ 0 1 0 ] 5 0 5
|
|
[ 0 1 0 ] 6 0 6
|
|
[ 0 1 1 ] 7 0 7
|
|
[ 0 1 1 ] 8 0 8
|
|
[ 0 2 0 ] 9 0 9
|
|
[ 0 2 0 ] 10 0 10
|
|
[ 0 2 1 ] 11 0 11
|
|
[ 0 2 1 ] 12 0 12
|
|
[ 1 0 0 ] 13 0 13
|
|
[ 1 0 0 ] 14 0 14
|
|
[ 1 0 1 ] 15 0 15
|
|
[ 1 0 1 ] 16 0 16
|
|
[ 1 1 0 ] 17 0 17
|
|
[ 1 1 0 ] 18 0 18
|
|
[ 1 1 1 ] 19 0 19
|
|
[ 1 1 1 ] 20 0 20
|
|
[ 1 2 0 ] 21 0 21
|
|
[ 1 2 0 ] 22 0 22
|
|
[ 1 2 1 ] 23 0 23
|
|
[ 1 2 1 ] 24 0 24
|
|
[ 2 0 0 ] 25 0 25
|
|
[ 2 0 0 ] 26 0 26
|
|
[ 2 0 1 ] 27 0 27
|
|
[ 2 0 1 ] 28 0 28
|
|
[ 2 1 0 ] 29 0 29
|
|
[ 2 1 0 ] 30 0 30
|
|
[ 2 1 1 ] 31 0 31
|
|
[ 2 1 1 ] 32 0 32
|
|
[ 2 2 0 ] 33 0 33
|
|
[ 2 2 0 ] 34 0 34
|
|
[ 2 2 1 ] 35 0 35
|
|
[ 2 2 1 ] 36 0 36
|
|
[ 3 0 0 ] 37 0 37
|
|
[ 3 0 0 ] 38 0 38
|
|
[ 3 0 1 ] 39 0 39
|
|
[ 3 0 1 ] 40 0 40
|
|
[ 3 1 0 ] 41 0 41
|
|
[ 3 1 0 ] 42 0 42
|
|
[ 3 1 1 ] 43 0 43
|
|
[ 3 1 1 ] 44 0 44
|
|
[ 3 2 0 ] 45 0 45
|
|
[ 3 2 0 ] 46 0 46
|
|
[ 3 2 1 ] 47 0 47
|
|
[ 3 2 1 ] 48 0 48
|
|
*/
|
|
|
|
|
|
|
|
type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
|
|
H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
|
|
H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
|
|
make_attr(loc_id,3,dims3,"compound3D",type_id,buf33);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_REFERENCE
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
/* Create references to dataset */
|
|
if (dset_name)
|
|
{
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++)
|
|
status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1);
|
|
}
|
|
}
|
|
make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_ENUM
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN;
|
|
}
|
|
}
|
|
}
|
|
|
|
/*
|
|
position enum3D of </g1> enum3D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 0 ] GREEN RED
|
|
[ 0 0 1 ] GREEN RED
|
|
[ 0 1 0 ] GREEN RED
|
|
[ 0 1 1 ] GREEN RED
|
|
[ 0 2 0 ] GREEN RED
|
|
[ 0 2 1 ] GREEN RED
|
|
[ 1 0 0 ] GREEN RED
|
|
[ 1 0 1 ] GREEN RED
|
|
[ 1 1 0 ] GREEN RED
|
|
[ 1 1 1 ] GREEN RED
|
|
[ 1 2 0 ] GREEN RED
|
|
[ 1 2 1 ] GREEN RED
|
|
[ 2 0 0 ] GREEN RED
|
|
[ 2 0 1 ] GREEN RED
|
|
[ 2 1 0 ] GREEN RED
|
|
[ 2 1 1 ] GREEN RED
|
|
[ 2 2 0 ] GREEN RED
|
|
[ 2 2 1 ] GREEN RED
|
|
[ 3 0 0 ] GREEN RED
|
|
[ 3 0 1 ] GREEN RED
|
|
[ 3 1 0 ] GREEN RED
|
|
[ 3 1 1 ] GREEN RED
|
|
[ 3 2 0 ] GREEN RED
|
|
[ 3 2 1 ] GREEN RED
|
|
*/
|
|
|
|
|
|
type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
|
|
H5Tenum_insert(type_id, "RED", (val = 0, &val));
|
|
H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
|
|
make_attr(loc_id,3,dims3,"enum3D",type_id,buf453);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_VLEN
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
/* Allocate and initialize VL dataset to write */
|
|
n=0;
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
int l;
|
|
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
|
|
buf53[i][j][k].len = i + 1;
|
|
for (l = 0; l < i + 1; l++)
|
|
if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0;
|
|
else ((int *)buf53[i][j][k].p)[l] = n++;
|
|
}
|
|
}
|
|
}
|
|
/*
|
|
position vlen3D of </g1> vlen3D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 1 ] 1 0 1
|
|
[ 0 1 0 ] 2 0 2
|
|
[ 0 1 1 ] 3 0 3
|
|
[ 0 2 0 ] 4 0 4
|
|
[ 0 2 1 ] 5 0 5
|
|
[ 1 0 0 ] 6 0 6
|
|
[ 1 0 0 ] 7 0 7
|
|
[ 1 0 1 ] 8 0 8
|
|
[ 1 0 1 ] 9 0 9
|
|
[ 1 1 0 ] 10 0 10
|
|
etc
|
|
*/
|
|
space_id = H5Screate_simple(3,dims3,NULL);
|
|
type_id = H5Tvlen_create(H5T_NATIVE_INT);
|
|
attr_id = H5Acreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT);
|
|
status = H5Awrite(attr_id,type_id,buf53);
|
|
assert(status>=0);
|
|
status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53);
|
|
assert(status>=0);
|
|
status = H5Aclose(attr_id);
|
|
status = H5Tclose(type_id);
|
|
status = H5Sclose(space_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_ARRAY
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
n=1;
|
|
for (i = 0; i < 24; i++) {
|
|
for (j = 0; j < (int)dimarray[0]; j++) {
|
|
if (make_diffs) buf63[i][j]=0;
|
|
else buf63[i][j]=n++;
|
|
}
|
|
}
|
|
/*
|
|
position array3D of </g1> array3D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 0 ] 1 0 1
|
|
[ 0 0 0 ] 2 0 2
|
|
[ 0 0 0 ] 3 0 3
|
|
[ 0 0 1 ] 4 0 4
|
|
[ 0 0 1 ] 5 0 5
|
|
[ 0 0 1 ] 6 0 6
|
|
[ 0 1 0 ] 7 0 7
|
|
etc
|
|
*/
|
|
|
|
type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
|
|
make_attr(loc_id,3,dims3,"array3D",type_id,buf63);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_INTEGER and H5T_FLOAT
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
n=1; f=1;
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
if (make_diffs) {
|
|
buf73[i][j][k]=0;
|
|
buf83[i][j][k]=0;
|
|
}
|
|
else {
|
|
buf73[i][j][k]=n++;
|
|
buf83[i][j][k]=f++;
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
/*
|
|
position integer3D of </g1> integer3D of </g1> difference
|
|
------------------------------------------------------------
|
|
[ 0 0 0 ] 1 0 1
|
|
[ 0 0 1 ] 2 0 2
|
|
[ 0 1 0 ] 3 0 3
|
|
[ 0 1 1 ] 4 0 4
|
|
[ 0 2 0 ] 5 0 5
|
|
[ 0 2 1 ] 6 0 6
|
|
[ 1 0 0 ] 7 0 7
|
|
[ 1 0 1 ] 8 0 8
|
|
[ 1 1 0 ] 9 0 9
|
|
[ 1 1 1 ] 10 0 10
|
|
etc
|
|
*/
|
|
make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
|
|
make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
|
|
}
|
|
|
|
|
|
|