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hdf5/test/trefer.c
Quincey Koziol 9f60f016ab [svn-r15800] Description: 
Bring file free space branch changes through r15795 into trunk, which
includes a fair bit of code cleanup & rearrangement along with a couple of
bug fixes also.

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-06 23:17:35 -05:00

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/***********************************************************
*
* Test program: trefer
*
* Test the Reference functionality
*
*************************************************************/
#include "testhdf5.h"
#include "hdf5.h"
#define FILE1 "trefer1.h5"
#define FILE2 "trefer2.h5"
#define FILE3 "trefer3.h5"
/* 1-D dataset with fixed dimensions */
#define SPACE1_NAME "Space1"
#define SPACE1_RANK 1
#define SPACE1_DIM1 4
/* 2-D dataset with fixed dimensions */
#define SPACE2_NAME "Space2"
#define SPACE2_RANK 2
#define SPACE2_DIM1 10
#define SPACE2_DIM2 10
/* Larger 1-D dataset with fixed dimensions */
#define SPACE3_NAME "Space3"
#define SPACE3_RANK 1
#define SPACE3_DIM1 100
/* Element selection information */
#define POINT1_NPOINTS 10
/* Compound datatype */
typedef struct s1_t {
unsigned int a;
unsigned int b;
float c;
} s1_t;
#define GROUPNAME "/group"
#define GROUPNAME2 "group2"
#define GROUPNAME3 "group3"
#define DSETNAME "/dset"
#define DSETNAME2 "dset2"
#define NAME_SIZE 16
/****************************************************************
**
** test_reference_obj(): Test basic H5R (reference) object reference code.
** Tests references to various kinds of objects
**
****************************************************************/
static void
test_reference_obj(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dataset, /* Dataset ID */
dset2; /* Dereferenced dataset ID */
hid_t group; /* Group ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Datatype ID */
hsize_t dims1[] = {SPACE1_DIM1};
hobj_ref_t *wbuf, /* buffer to write to disk */
*rbuf, /* buffer read from disk */
*tbuf; /* temp. buffer read from disk */
hobj_ref_t nvrbuf[3]={0,101,1000000000}; /* buffer with non-valid refs */
unsigned *tu32; /* Temporary pointer to uint32 data */
int i, j; /* counting variables */
const char *write_comment="Foo!"; /* Comments for group */
char read_comment[10];
H5O_type_t obj_type; /* Object type */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Object Reference Functions\n"));
/* Allocate write & read buffers */
wbuf = malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
rbuf = malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
tbuf = malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
/* Create file */
fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a group */
group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(group, FAIL, "H5Gcreate2");
/* Set group's comment */
ret = H5Oset_comment(group, write_comment);
CHECK(ret, FAIL, "H5Oset_comment");
/* Create a dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++)
*tu32++=i*3;
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create another dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a datatype to refer to */
tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK(tid1, FAIL, "H5Tcreate");
/* Insert fields */
ret = H5Tinsert(tid1, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
/* Save datatype for later */
ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Tcommit2");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close group */
ret = H5Gclose(group);
CHECK(ret, FAIL, "H5Gclose");
/* Create a dataset */
dataset = H5Dcreate2(fid1, "Dataset3", H5T_STD_REF_OBJ, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dcreate2");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf[0], fid1, "/Group1/Dataset1", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf[1], fid1, "/Group1/Dataset2", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[1], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Create reference to group */
ret = H5Rcreate(&wbuf[2], fid1, "/Group1", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[2], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type2");
/* Create reference to named datatype */
ret = H5Rcreate(&wbuf[3], fid1, "/Group1/Datatype1", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[3], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type2");
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf);
CHECK(ret, FAIL, "H5Dread");
/* Open dataset object */
dset2 = H5Rdereference(dataset, H5R_OBJECT, &rbuf[0]);
CHECK(dset2, FAIL, "H5Rdereference");
/* Check information in referenced dataset */
sid1 = H5Dget_space(dset2);
CHECK(sid1, FAIL, "H5Dget_space");
ret = (int)H5Sget_simple_extent_npoints(sid1);
VERIFY(ret, 4, "H5Sget_simple_extent_npoints");
/* Read from disk */
ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, tbuf);
CHECK(ret, FAIL, "H5Dread");
for(tu32 = (unsigned *)tbuf, i = 0; i < SPACE1_DIM1; i++, tu32++)
VERIFY(*tu32, (uint32_t)(i*3), "Data");
/* Close dereferenced Dataset */
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
/* Open group object */
group = H5Rdereference(dataset, H5R_OBJECT, &rbuf[2]);
CHECK(group, FAIL, "H5Rdereference");
/* Get group's comment */
ret = H5Oget_comment(group, read_comment, (size_t)10);
CHECK(ret, FAIL, "H5Oget_comment");
/* Check for correct comment value */
if(HDstrcmp(write_comment, read_comment) != 0)
TestErrPrintf("Error! Incorrect group comment, wanted: %s, got: %s\n",write_comment,read_comment);
/* Close group */
ret = H5Gclose(group);
CHECK(ret, FAIL, "H5Gclose");
/* Open datatype object */
tid1 = H5Rdereference(dataset, H5R_OBJECT, &rbuf[3]);
CHECK(tid1, FAIL, "H5Rdereference");
/* Verify correct datatype */
{
H5T_class_t tclass;
tclass = H5Tget_class(tid1);
VERIFY(tclass, H5T_COMPOUND, "H5Tget_class");
ret= H5Tget_nmembers(tid1);
VERIFY(ret, 3, "H5Tget_nmembers");
}
/* Attempting to retrieve type of object using non-valid refs */
for(j = 0; j < 3; j++) {
H5E_BEGIN_TRY {
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &nvrbuf[j], &obj_type);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Rget_obj_type2");
} /* end for */
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf);
free(rbuf);
free(tbuf);
} /* test_reference_obj() */
/****************************************************************
**
** test_reference_region(): Test basic H5R (reference) object reference code.
** Tests references to various kinds of objects
**
****************************************************************/
static void
test_reference_region(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dset1, /* Dataset ID */
dset2; /* Dereferenced dataset ID */
hid_t sid1, /* Dataspace ID #1 */
sid2; /* Dataspace ID #2 */
hsize_t dims1[] = {SPACE1_DIM1},
dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
hsize_t coord1[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
hsize_t * coords; /* Coordinate buffer */
hsize_t low[SPACE2_RANK]; /* Selection bounds */
hsize_t high[SPACE2_RANK]; /* Selection bounds */
hdset_reg_ref_t *wbuf, /* buffer to write to disk */
*rbuf; /* buffer read from disk */
hdset_reg_ref_t nvrbuf[3]={0,101,1000000000}; /* buffer with non-valid refs */
uint8_t *dwbuf, /* Buffer for writing numeric data to disk */
*drbuf; /* Buffer for reading numeric data from disk */
uint8_t *tu8; /* Temporary pointer to uint8 data */
H5O_type_t obj_type; /* Type of object */
int i, j; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Dataset Region Reference Functions\n"));
/* Allocate write & read buffers */
wbuf = HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
rbuf = HDmalloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
dwbuf = HDmalloc(sizeof(uint8_t) * SPACE2_DIM1 * SPACE2_DIM2);
drbuf = HDcalloc(sizeof(uint8_t), (size_t)(SPACE2_DIM1 * SPACE2_DIM2));
/* Create file */
fid1 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
CHECK(sid2, FAIL, "H5Screate_simple");
/* Create a dataset */
dset2 = H5Dcreate2(fid1, "Dataset2", H5T_STD_U8LE, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dset2, FAIL, "H5Dcreate2");
for(tu8 = dwbuf, i = 0; i < (SPACE2_DIM1 * SPACE2_DIM2); i++)
*tu8++ = i * 3;
/* Write selection to disk */
ret = H5Dwrite(dset2, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
/* Create dataspace for the reference dataset */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a dataset */
dset1 = H5Dcreate2(fid1, "Dataset1", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dcreate2");
/* Create references */
/* Select 6x6 hyperslab for first reference */
start[0] = 2; start[1] = 2;
stride[0] = 1; stride[1] = 1;
count[0] = 1; count[1] = 1;
block[0] = 6; block[1] = 6;
ret = H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 36, "H5Sget_select_npoints");
/* Store first dataset region */
ret = H5Rcreate(&wbuf[0], fid1, "/Dataset2", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &wbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Select sequence of ten points for second reference */
coord1[0][0] = 6; coord1[0][1] = 9;
coord1[1][0] = 2; coord1[1][1] = 2;
coord1[2][0] = 8; coord1[2][1] = 4;
coord1[3][0] = 1; coord1[3][1] = 6;
coord1[4][0] = 2; coord1[4][1] = 8;
coord1[5][0] = 3; coord1[5][1] = 2;
coord1[6][0] = 0; coord1[6][1] = 4;
coord1[7][0] = 9; coord1[7][1] = 0;
coord1[8][0] = 7; coord1[8][1] = 1;
coord1[9][0] = 3; coord1[9][1] = 3;
ret = H5Sselect_elements(sid2, H5S_SELECT_SET, (size_t)POINT1_NPOINTS, (const hsize_t *)coord1);
CHECK(ret, FAIL, "H5Sselect_elements");
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 10, "H5Sget_select_npoints");
/* Store second dataset region */
ret = H5Rcreate(&wbuf[1], fid1, "/Dataset2", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
/* Write selection to disk */
ret = H5Dwrite(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close uint8 dataset dataspace */
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE2, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dset1 = H5Dopen2(fid1, "/Dataset1", H5P_DEFAULT);
CHECK(dset1, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf);
CHECK(ret, FAIL, "H5Dread");
/* Try to open objects */
dset2 = H5Rdereference(dset1, H5R_DATASET_REGION, &rbuf[0]);
CHECK(dset2, FAIL, "H5Rdereference");
/* Check what H5Rget_obj_type2 function returns */
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &rbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Check information in referenced dataset */
sid1 = H5Dget_space(dset2);
CHECK(sid1, FAIL, "H5Dget_space");
ret = (int)H5Sget_simple_extent_npoints(sid1);
VERIFY(ret, 100, "H5Sget_simple_extent_npoints");
/* Read from disk */
ret = H5Dread(dset2, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, drbuf);
CHECK(ret, FAIL, "H5Dread");
for(tu8 = (uint8_t *)drbuf, i = 0; i < (SPACE2_DIM1 * SPACE2_DIM2); i++, tu8++)
VERIFY(*tu8, (uint8_t)(i * 3), "Data");
/* Get the hyperslab selection */
sid2 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[0]);
CHECK(sid2, FAIL, "H5Rget_region");
/* Verify correct hyperslab selected */
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 36, "H5Sget_select_npoints");
ret = (int)H5Sget_select_hyper_nblocks(sid2);
VERIFY(ret, 1, "H5Sget_select_hyper_nblocks");
coords = HDmalloc(ret * SPACE2_RANK * sizeof(hsize_t) * 2); /* allocate space for the hyperslab blocks */
ret = H5Sget_select_hyper_blocklist(sid2, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_hyper_blocklist");
VERIFY(coords[0], 2, "Hyperslab Coordinates");
VERIFY(coords[1], 2, "Hyperslab Coordinates");
VERIFY(coords[2], 7, "Hyperslab Coordinates");
VERIFY(coords[3], 7, "Hyperslab Coordinates");
HDfree(coords);
ret = H5Sget_select_bounds(sid2, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 2, "Selection Bounds");
VERIFY(low[1], 2, "Selection Bounds");
VERIFY(high[0], 7, "Selection Bounds");
VERIFY(high[1], 7, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
/* Get the element selection */
sid2 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[1]);
CHECK(sid2, FAIL, "H5Rget_region");
/* Verify correct elements selected */
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 10, "H5Sget_select_npoints");
ret = (int)H5Sget_select_elem_npoints(sid2);
VERIFY(ret, 10, "H5Sget_select_elem_npoints");
coords = HDmalloc(ret * SPACE2_RANK * sizeof(hsize_t)); /* allocate space for the element points */
ret = H5Sget_select_elem_pointlist(sid2, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_elem_pointlist");
VERIFY(coords[0], coord1[0][0], "Element Coordinates");
VERIFY(coords[1], coord1[0][1], "Element Coordinates");
VERIFY(coords[2], coord1[1][0], "Element Coordinates");
VERIFY(coords[3], coord1[1][1], "Element Coordinates");
VERIFY(coords[4], coord1[2][0], "Element Coordinates");
VERIFY(coords[5], coord1[2][1], "Element Coordinates");
VERIFY(coords[6], coord1[3][0], "Element Coordinates");
VERIFY(coords[7], coord1[3][1], "Element Coordinates");
VERIFY(coords[8], coord1[4][0], "Element Coordinates");
VERIFY(coords[9], coord1[4][1], "Element Coordinates");
VERIFY(coords[10], coord1[5][0], "Element Coordinates");
VERIFY(coords[11], coord1[5][1], "Element Coordinates");
VERIFY(coords[12], coord1[6][0], "Element Coordinates");
VERIFY(coords[13], coord1[6][1], "Element Coordinates");
VERIFY(coords[14], coord1[7][0], "Element Coordinates");
VERIFY(coords[15], coord1[7][1], "Element Coordinates");
VERIFY(coords[16], coord1[8][0], "Element Coordinates");
VERIFY(coords[17], coord1[8][1], "Element Coordinates");
VERIFY(coords[18], coord1[9][0], "Element Coordinates");
VERIFY(coords[19], coord1[9][1], "Element Coordinates");
HDfree(coords);
ret = H5Sget_select_bounds(sid2, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 0, "Selection Bounds");
VERIFY(low[1], 0, "Selection Bounds");
VERIFY(high[0], 9, "Selection Bounds");
VERIFY(high[1], 9, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
/* Close first space */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dereferenced Dataset */
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
/* Attempting to retrieve type of object using non-valid refs */
for(j = 0; j < 3; j++) {
H5E_BEGIN_TRY {
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &nvrbuf[j], &obj_type);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Rget_obj_type2");
} /* end for */
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf);
free(rbuf);
free(dwbuf);
free(drbuf);
} /* test_reference_region() */
/****************************************************************
**
** test_reference_region_1D(): Test H5R (reference) object reference code.
** Tests 1-D references to various kinds of objects
**
****************************************************************/
static void
test_reference_region_1D(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dset1, /* Dataset ID */
dset3; /* Dereferenced dataset ID */
hid_t sid1, /* Dataspace ID #1 */
sid3; /* Dataspace ID #3 */
hsize_t dims1[] = {SPACE1_DIM1},
dims3[] = {SPACE3_DIM1};
hsize_t start[SPACE3_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE3_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE3_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE3_RANK]; /* Block size of hyperslab */
hsize_t coord1[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
hsize_t * coords; /* Coordinate buffer */
hsize_t low[SPACE3_RANK]; /* Selection bounds */
hsize_t high[SPACE3_RANK]; /* Selection bounds */
hdset_reg_ref_t *wbuf, /* buffer to write to disk */
*rbuf; /* buffer read from disk */
uint8_t *dwbuf, /* Buffer for writing numeric data to disk */
*drbuf; /* Buffer for reading numeric data from disk */
uint8_t *tu8; /* Temporary pointer to uint8 data */
H5O_type_t obj_type; /* Object type */
int i; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Dataset Region Reference Functions\n"));
/* Allocate write & read buffers */
wbuf = HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
rbuf = HDmalloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
dwbuf = HDmalloc(sizeof(uint8_t) * SPACE3_DIM1);
drbuf = HDcalloc(sizeof(uint8_t), (size_t)SPACE3_DIM1);
/* Create file */
fid1 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid3 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
CHECK(sid3, FAIL, "H5Screate_simple");
/* Create a dataset */
dset3 = H5Dcreate2(fid1, "Dataset2", H5T_STD_U8LE, sid3, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dset3, FAIL, "H5Dcreate2");
for(tu8 = dwbuf, i = 0; i < SPACE3_DIM1; i++)
*tu8++ = i * 3;
/* Write selection to disk */
ret = H5Dwrite(dset3, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dset3);
CHECK(ret, FAIL, "H5Dclose");
/* Create dataspace for the reference dataset */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a dataset */
dset1 = H5Dcreate2(fid1, "Dataset1", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dcreate2");
/* Create references */
/* Select 15 2x1 hyperslabs for first reference */
start[0] = 2;
stride[0] = 5;
count[0] = 15;
block[0] = 2;
ret = H5Sselect_hyperslab(sid3, H5S_SELECT_SET, start, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 30, "H5Sget_select_npoints");
/* Store first dataset region */
ret = H5Rcreate(&wbuf[0], fid1, "/Dataset2", H5R_DATASET_REGION, sid3);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &wbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Select sequence of ten points for second reference */
coord1[0][0] = 16;
coord1[1][0] = 22;
coord1[2][0] = 38;
coord1[3][0] = 41;
coord1[4][0] = 52;
coord1[5][0] = 63;
coord1[6][0] = 70;
coord1[7][0] = 89;
coord1[8][0] = 97;
coord1[9][0] = 03;
ret = H5Sselect_elements(sid3, H5S_SELECT_SET, (size_t)POINT1_NPOINTS, (const hsize_t *)coord1);
CHECK(ret, FAIL, "H5Sselect_elements");
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 10, "H5Sget_select_npoints");
/* Store second dataset region */
ret = H5Rcreate(&wbuf[1], fid1, "/Dataset2", H5R_DATASET_REGION, sid3);
CHECK(ret, FAIL, "H5Rcreate");
/* Write selection to disk */
ret = H5Dwrite(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close uint8 dataset dataspace */
ret = H5Sclose(sid3);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE2, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dset1 = H5Dopen2(fid1, "/Dataset1", H5P_DEFAULT);
CHECK(dset1, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf);
CHECK(ret, FAIL, "H5Dread");
/* Try to open objects */
dset3 = H5Rdereference(dset1, H5R_DATASET_REGION, &rbuf[0]);
CHECK(dset3, FAIL, "H5Rdereference");
/* Check what H5Rget_obj_type2 function returns */
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &rbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Check information in referenced dataset */
sid1 = H5Dget_space(dset3);
CHECK(sid1, FAIL, "H5Dget_space");
ret = (int)H5Sget_simple_extent_npoints(sid1);
VERIFY(ret, 100, "H5Sget_simple_extent_npoints");
/* Read from disk */
ret = H5Dread(dset3, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, drbuf);
CHECK(ret, FAIL, "H5Dread");
for(tu8 = (uint8_t *)drbuf, i = 0; i < SPACE3_DIM1; i++, tu8++)
VERIFY(*tu8, (uint8_t)(i * 3), "Data");
/* Get the hyperslab selection */
sid3 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[0]);
CHECK(sid3, FAIL, "H5Rget_region");
/* Verify correct hyperslab selected */
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 30, "H5Sget_select_npoints");
ret = (int)H5Sget_select_hyper_nblocks(sid3);
VERIFY(ret, 15, "H5Sget_select_hyper_nblocks");
coords = HDmalloc(ret * SPACE3_RANK * sizeof(hsize_t) * 2); /* allocate space for the hyperslab blocks */
ret = H5Sget_select_hyper_blocklist(sid3, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_hyper_blocklist");
VERIFY(coords[0], 2, "Hyperslab Coordinates");
VERIFY(coords[1], 3, "Hyperslab Coordinates");
VERIFY(coords[2], 7, "Hyperslab Coordinates");
VERIFY(coords[3], 8, "Hyperslab Coordinates");
VERIFY(coords[4], 12, "Hyperslab Coordinates");
VERIFY(coords[5], 13, "Hyperslab Coordinates");
VERIFY(coords[6], 17, "Hyperslab Coordinates");
VERIFY(coords[7], 18, "Hyperslab Coordinates");
VERIFY(coords[8], 22, "Hyperslab Coordinates");
VERIFY(coords[9], 23, "Hyperslab Coordinates");
VERIFY(coords[10], 27, "Hyperslab Coordinates");
VERIFY(coords[11], 28, "Hyperslab Coordinates");
VERIFY(coords[12], 32, "Hyperslab Coordinates");
VERIFY(coords[13], 33, "Hyperslab Coordinates");
VERIFY(coords[14], 37, "Hyperslab Coordinates");
VERIFY(coords[15], 38, "Hyperslab Coordinates");
VERIFY(coords[16], 42, "Hyperslab Coordinates");
VERIFY(coords[17], 43, "Hyperslab Coordinates");
VERIFY(coords[18], 47, "Hyperslab Coordinates");
VERIFY(coords[19], 48, "Hyperslab Coordinates");
VERIFY(coords[20], 52, "Hyperslab Coordinates");
VERIFY(coords[21], 53, "Hyperslab Coordinates");
VERIFY(coords[22], 57, "Hyperslab Coordinates");
VERIFY(coords[23], 58, "Hyperslab Coordinates");
VERIFY(coords[24], 62, "Hyperslab Coordinates");
VERIFY(coords[25], 63, "Hyperslab Coordinates");
VERIFY(coords[26], 67, "Hyperslab Coordinates");
VERIFY(coords[27], 68, "Hyperslab Coordinates");
VERIFY(coords[28], 72, "Hyperslab Coordinates");
VERIFY(coords[29], 73, "Hyperslab Coordinates");
HDfree(coords);
ret = H5Sget_select_bounds(sid3, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 2, "Selection Bounds");
VERIFY(high[0], 73, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid3);
CHECK(ret, FAIL, "H5Sclose");
/* Get the element selection */
sid3 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[1]);
CHECK(sid3, FAIL, "H5Rget_region");
/* Verify correct elements selected */
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 10, "H5Sget_select_npoints");
ret = (int)H5Sget_select_elem_npoints(sid3);
VERIFY(ret, 10, "H5Sget_select_elem_npoints");
coords = HDmalloc(ret * SPACE3_RANK * sizeof(hsize_t)); /* allocate space for the element points */
ret = H5Sget_select_elem_pointlist(sid3, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_elem_pointlist");
VERIFY(coords[0], coord1[0][0], "Element Coordinates");
VERIFY(coords[1], coord1[1][0], "Element Coordinates");
VERIFY(coords[2], coord1[2][0], "Element Coordinates");
VERIFY(coords[3], coord1[3][0], "Element Coordinates");
VERIFY(coords[4], coord1[4][0], "Element Coordinates");
VERIFY(coords[5], coord1[5][0], "Element Coordinates");
VERIFY(coords[6], coord1[6][0], "Element Coordinates");
VERIFY(coords[7], coord1[7][0], "Element Coordinates");
VERIFY(coords[8], coord1[8][0], "Element Coordinates");
VERIFY(coords[9], coord1[9][0], "Element Coordinates");
HDfree(coords);
ret = H5Sget_select_bounds(sid3, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 3, "Selection Bounds");
VERIFY(high[0], 97, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid3);
CHECK(ret, FAIL, "H5Sclose");
/* Close first space */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dereferenced Dataset */
ret = H5Dclose(dset3);
CHECK(ret, FAIL, "H5Dclose");
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf);
free(rbuf);
free(dwbuf);
free(drbuf);
} /* test_reference_region_1D() */
/****************************************************************
**
** test_reference_obj_deleted(): Test H5R (reference) object reference code.
** Tests for correct failures for deleted and non-existent objects
**
****************************************************************/
static void
test_reference_obj_deleted(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dataset, /* Dataset ID */
dset2; /* Dereferenced dataset ID */
hid_t sid1; /* Dataspace ID */
hobj_ref_t oref; /* Object Reference to test */
H5O_type_t obj_type; /* Object type */
herr_t ret; /* Generic return value */
/* Create file */
fid1 = H5Fcreate(FILE3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create scalar dataspace for datasets */
sid1 = H5Screate_simple(0, NULL, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a dataset to reference (deleted later) */
dataset = H5Dcreate2(fid1, "Dataset1", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a dataset */
dataset = H5Dcreate2(fid1, "Dataset2", H5T_STD_REF_OBJ, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Create reference to dataset */
ret = H5Rcreate(&oref, fid1, "/Dataset1", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &oref, &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &oref);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Delete referenced dataset */
ret = H5Ldelete(fid1, "/Dataset1", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Ldelete");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE3, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset = H5Dopen2(fid1, "/Dataset2", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dopen2");
/* Read selection from disk */
HDmemset(&oref, 0, sizeof(hobj_ref_t));
ret = H5Dread(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &oref);
CHECK(ret, FAIL, "H5Dread");
/* Open deleted dataset object */
dset2 = H5Rdereference(dataset, H5R_OBJECT, &oref);
VERIFY(dset2, FAIL, "H5Rdereference");
/* Open nonsense reference */
HDmemset(&oref, 0, sizeof(hobj_ref_t));
dset2 = H5Rdereference(dataset, H5R_OBJECT, &oref);
VERIFY(dset2, FAIL, "H5Rdereference");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* test_reference_obj_deleted() */
/****************************************************************
**
** test_deref_iter_op(): Iterator callback for test_reference_group_iterate()
** test.
**
****************************************************************/
static herr_t
test_deref_iter_op(hid_t UNUSED group, const char *name, const H5L_info_t UNUSED *info,
void *op_data)
{
int *count = (int *)op_data; /* Pointer to name counter */
herr_t ret_value;
/* Simple check for correct names */
if(*count == 0) {
if(HDstrcmp(name, DSETNAME2) == 0)
ret_value = 0;
else
ret_value = -1;
} /* end if */
else if(*count == 1) {
if(HDstrcmp(name, GROUPNAME2) == 0)
ret_value = 0;
else
ret_value = -1;
} /* end if */
else if(*count == 2) {
if(HDstrcmp(name, GROUPNAME3) == 0)
ret_value = 0;
else
ret_value = -1;
} /* end if */
else
ret_value = -1;
(*count)++;
return(ret_value);
} /* end test_deref_iter_op() */
/****************************************************************
**
** test_reference_group(): Test H5R (reference) object reference code.
** Tests for correct behavior of various routines on dereferenced group
**
****************************************************************/
static void
test_reference_group(void)
{
hid_t fid = -1; /* File ID */
hid_t gid = -1, gid2 = -1; /* Group IDs */
hid_t did; /* Dataset ID */
hid_t sid; /* Dataspace ID */
hobj_ref_t wref; /* Reference to write */
hobj_ref_t rref; /* Reference to read */
H5G_info_t ginfo; /* Group info struct */
char objname[NAME_SIZE]; /* Buffer to store name */
H5O_info_t oinfo; /* Object info struct */
int count = 0; /* Count within iterated group */
herr_t ret;
/* Create file with a group and a dataset containing an object reference to the group */
fid = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fcreate");
/* Create dataspace to use for dataset */
sid = H5Screate(H5S_SCALAR);
CHECK(sid, FAIL, "H5Screate");
/* Create group to refer to */
gid = H5Gcreate2(fid, GROUPNAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(gid, FAIL, "H5Gcreate2");
/* Create nested groups */
gid2 = H5Gcreate2(gid, GROUPNAME2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(gid2, FAIL, "H5Gcreate2");
ret = H5Gclose(gid2);
CHECK(ret, FAIL, "H5Gclose");
gid2 = H5Gcreate2(gid, GROUPNAME3, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(gid2, FAIL, "H5Gcreate2");
ret = H5Gclose(gid2);
CHECK(ret, FAIL, "H5Gclose");
/* Create bottom dataset */
did = H5Dcreate2(gid, DSETNAME2, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
assert(did > 0);
ret = H5Dclose(did);
assert(ret >= 0);
ret = H5Gclose(gid);
CHECK(ret, FAIL, "H5Gclose");
/* Create dataset */
did = H5Dcreate2(fid, DSETNAME, H5T_STD_REF_OBJ, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dcreate2");
/* Create reference to group */
ret = H5Rcreate(&wref, fid, GROUPNAME, H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
/* Write reference to disk */
ret = H5Dwrite(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &wref);
CHECK(ret, FAIL, "H5Dwrite");
/* Close objects */
ret = H5Dclose(did);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Sclose(sid);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
/* Re-open dataset */
did = H5Dopen2(fid, DSETNAME, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen2");
/* Read in the reference */
ret = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rref);
CHECK(ret, FAIL, "H5Dread");
/* Dereference to get the group */
gid = H5Rdereference(did, H5R_OBJECT, &rref);
CHECK(gid, FAIL, "H5Rdereference");
/* Iterate through objects in dereferenced group */
ret = H5Literate(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_deref_iter_op, &count);
CHECK(ret, FAIL, "H5Literate");
/* Various queries on the group opened */
ret = H5Gget_info(gid, &ginfo);
CHECK(ret, FAIL, "H5Gget_info");
VERIFY(ginfo.nlinks, 3, "H5Gget_info");
ret = H5Lget_name_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, objname, (size_t)NAME_SIZE, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Lget_name_by_idx");
VERIFY_STR(objname, DSETNAME2, "H5Lget_name_by_idx");
ret = H5Oget_info_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Oget_info_by_idx");
VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Oget_info_by_idx");
/* Unlink one of the objects in the dereferenced group */
ret = H5Ldelete(gid, GROUPNAME2, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Ldelete");
/* Delete dataset object in dereferenced group (with other dataset still open) */
ret = H5Ldelete(gid, DSETNAME2, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Ldelete");
/* Close objects */
ret = H5Dclose(did);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Gclose(gid);
CHECK(ret, FAIL, "H5Gclose");
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
} /* test_reference_group() */
#ifndef H5_NO_DEPRECATED_SYMBOLS
/****************************************************************
**
** test_reference_compat(): Test basic H5R (reference) object reference code.
** Tests deprecated API routines
**
****************************************************************/
static void
test_reference_compat(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t group; /* Group ID */
hid_t sid1, /* Dataspace IDs */
sid2;
hid_t tid1; /* Datatype ID */
hsize_t dims1[] = {SPACE1_DIM1},
dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
hsize_t coord1[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
hobj_ref_t *wbuf_obj, /* Buffer to write to disk */
*rbuf_obj; /* Buffer read from disk */
hdset_reg_ref_t *wbuf_reg, /* Buffer to write to disk */
*rbuf_reg; /* Buffer read from disk */
H5G_obj_t obj_type; /* Object type */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Deprecated Object Reference Functions\n"));
/* Allocate write & read buffers */
wbuf_obj = HDcalloc(sizeof(hobj_ref_t), SPACE1_DIM1);
rbuf_obj = HDmalloc(sizeof(hobj_ref_t) * SPACE1_DIM1);
wbuf_reg = HDcalloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1);
rbuf_reg = HDmalloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
/* Create file */
fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create another dataspace for datasets */
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
CHECK(sid2, FAIL, "H5Screate_simple");
/* Create a group */
group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(group, FAIL, "H5Gcreate2");
/* Create a dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create another dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a datatype to refer to */
tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK(tid1, FAIL, "H5Tcreate");
/* Insert fields */
ret = H5Tinsert(tid1, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
/* Save datatype for later */
ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Tcommit2");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close group */
ret = H5Gclose(group);
CHECK(ret, FAIL, "H5Gclose");
/* Create a dataset with object reference datatype */
dataset = H5Dcreate2(fid1, "Dataset3", H5T_STD_REF_OBJ, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dcreate2");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf_obj[0], fid1, "/Group1/Dataset1", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf_obj[1], fid1, "/Group1/Dataset2", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
/* Create reference to group */
ret = H5Rcreate(&wbuf_obj[2], fid1, "/Group1", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
/* Create reference to named datatype */
ret = H5Rcreate(&wbuf_obj[3], fid1, "/Group1/Datatype1", H5R_OBJECT, -1);
CHECK(ret, FAIL, "H5Rcreate");
/* Write references to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf_obj);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a dataset with region reference datatype */
dataset = H5Dcreate2(fid1, "Dataset4", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dcreate2");
/* Select 6x6 hyperslab for first reference */
start[0] = 2; start[1] = 2;
stride[0] = 1; stride[1] = 1;
count[0] = 1; count[1] = 1;
block[0] = 6; block[1] = 6;
ret = H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
/* Create first dataset region */
ret = H5Rcreate(&wbuf_reg[0], fid1, "/Group1/Dataset1", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
/* Select sequence of ten points for second reference */
coord1[0][0] = 6; coord1[0][1] = 9;
coord1[1][0] = 2; coord1[1][1] = 2;
coord1[2][0] = 8; coord1[2][1] = 4;
coord1[3][0] = 1; coord1[3][1] = 6;
coord1[4][0] = 2; coord1[4][1] = 8;
coord1[5][0] = 3; coord1[5][1] = 2;
coord1[6][0] = 0; coord1[6][1] = 4;
coord1[7][0] = 9; coord1[7][1] = 0;
coord1[8][0] = 7; coord1[8][1] = 1;
coord1[9][0] = 3; coord1[9][1] = 3;
ret = H5Sselect_elements(sid2, H5S_SELECT_SET, (size_t)POINT1_NPOINTS, (const hsize_t *)coord1);
CHECK(ret, FAIL, "H5Sselect_elements");
/* Create second dataset region */
ret = H5Rcreate(&wbuf_reg[1], fid1, "/Group1/Dataset2", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf_reg);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close disk dataspaces */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the object reference dataset */
dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf_obj);
CHECK(ret, FAIL, "H5Dread");
/* Verify type of objects pointed at */
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[0]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[1]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[2]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_GROUP, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[3]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_TYPE, "H5Rget_obj_type1");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Open the dataset region reference dataset */
dataset = H5Dopen2(fid1, "/Dataset4", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dataset, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf_reg);
CHECK(ret, FAIL, "H5Dread");
/* Verify type of objects pointed at */
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[0]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[1]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[2]);
VERIFY(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[3]);
VERIFY(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
HDfree(wbuf_obj);
HDfree(rbuf_obj);
HDfree(wbuf_reg);
HDfree(rbuf_reg);
} /* test_reference_compat() */
#endif /* H5_NO_DEPRECATED_SYMBOLS */
/****************************************************************
**
** test_reference(): Main H5R reference testing routine.
**
****************************************************************/
void
test_reference(void)
{
/* Output message about test being performed */
MESSAGE(5, ("Testing References\n"));
test_reference_obj(); /* Test basic H5R object reference code */
test_reference_region(); /* Test basic H5R dataset region reference code */
test_reference_region_1D(); /* Test H5R dataset region reference code for 1-D datasets */
test_reference_obj_deleted(); /* Test H5R object reference code for deleted objects */
test_reference_group(); /* Test operations on dereferenced groups */
#ifndef H5_NO_DEPRECATED_SYMBOLS
test_reference_compat(); /* Test operations with old API routines */
#endif /* H5_NO_DEPRECATED_SYMBOLS */
} /* test_reference() */
/*-------------------------------------------------------------------------
* Function: cleanup_reference
*
* Purpose: Cleanup temporary test files
*
* Return: none
*
* Programmer: Quincey Koziol
* September 8, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void
cleanup_reference(void)
{
remove(FILE1);
remove(FILE2);
remove(FILE3);
}
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