mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2024-11-27 02:10:55 +08:00
Code Issues Packages Projects Releases Wiki Activity
793eb6b219
hdf5/test/use_disable_mdc_flushes.c
Dana Robinson 78fda91295 Fixed some exit calls.
2019-09-06 18:06:26 -07:00

548 lines
17 KiB
C
Raw Blame History

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* This is copied from use_append_chunk.c with modifications to show
* the usage of H5Odisable_mdc_flushes/H5Oenable_mdc_flushes/H5Oare_mdc_flushes_disabled public routines.
*/
#include "h5test.h"
/* This test uses many POSIX things that are not available on
* Windows. We're using a check for fork(2) here as a proxy for
* all POSIX/Unix/Linux things until this test can be made
* more platform-independent.
*/
#ifdef H5_HAVE_FORK
#define H5D_FRIEND /*suppress error about including H5Dpkg */
#define H5D_TESTING
#include "H5Dpkg.h"
/* Global Variable definitions */
const char *progname_g="use_disable_mdc_flushes"; /* program name */
/* these two definitions must match each other */
#define UC_DATATYPE H5T_NATIVE_SHORT /* use case HDF5 data type */
#define UC_CTYPE short /* use case C data type */
#define UC_RANK 3 /* use case dataset rank */
#define Chunksize_DFT 256 /* chunksize default */
#define Hgoto_error(val) {ret_value=val; goto done;}
char *filename_g;
hsize_t nplanes_g;
int use_swmr_g;
int chunkplanes_g;
int chunksize_g;
hsize_t dims_g[UC_RANK];
hsize_t max_dims_g[UC_RANK];
hsize_t chunkdims_g[UC_RANK];
static void usage(const char *prog);
static int parse_option(int argc, char * const argv[]);
static void show_parameters(void);
static int create_file(void);
static int setup_parameters(int argc, char * const argv[]);
/*
* Note: Long options are not yet implemented.
*
* usage: use_disable_mdc_flushes [OPTIONS]
* OPTIONS
* -h, --help Print a usage message and exit
* -f FN Test file name [default: use_disable_mdc_flushes.h5]
* -n N, --nplanes=N Number of planes to write. [default: 1000]
* -s N, --swmr=N Use SWMR mode (0: no, non-0: yes) default is yes
* -z N, --chunksize=N Chunk size [default: 256]
* -y N, --chunkplanes=N Number of planes per chunk [default: 1]
*/
static void
usage(const char *prog)
{
HDfprintf(stderr, "usage: %s [OPTIONS]\n", prog);
HDfprintf(stderr, " OPTIONS\n");
HDfprintf(stderr, " -h Print a usage message and exit\n");
HDfprintf(stderr, " -f FN Test file name [default: %s.h5]\n", prog);
HDfprintf(stderr, " -n N Number of planes to write. [default: 1000]\n");
HDfprintf(stderr, " -s N Use SWMR mode (0: no, non-0: yes) default is yes\n");
HDfprintf(stderr, " -z N Chunk size [default: %d]\n", Chunksize_DFT);
HDfprintf(stderr, " -y N Number of planes per chunk [default: 1]\n");
HDfprintf(stderr, "\n");
} /* usage() */
/*
* Setup Use Case parameters by parsing command line options.
* Setup default values if not set by options. */
static int
parse_option(int argc, char * const argv[])
{
int ret_value=0;
int c;
/* command line options: See function usage for a description */
const char *cmd_options = "f:hn:s:y:z:";
/* suppress getopt from printing error */
opterr = 0;
while (1){
c = getopt (argc, argv, cmd_options);
if (-1 == c)
break;
switch (c) {
case 'h':
usage(progname_g);
HDexit(EXIT_SUCCESS);
break;
case 'f': /* usecase data file name */
filename_g = optarg;
break;
case 'n': /* number of planes to write/read */
if ((nplanes_g = HDatoi(optarg)) <= 0){
HDfprintf(stderr, "bad number of planes %s, must be a positive integer\n", optarg);
usage(progname_g);
Hgoto_error(-1);
};
break;
case 's': /* use swmr file open mode */
if ((use_swmr_g = HDatoi(optarg)) < 0){
HDfprintf(stderr, "swmr value should be 0(no) or 1(yes)\n");
usage(progname_g);
Hgoto_error(-1);
};
break;
case 'y': /* Number of planes per chunk */
if ((chunkplanes_g = HDatoi(optarg)) <= 0){
HDfprintf(stderr, "bad number of planes per chunk %s, must be a positive integer\n", optarg);
usage(progname_g);
Hgoto_error(-1);
};
break;
case 'z': /* size of chunk=(z,z) */
if ((chunksize_g = HDatoi(optarg)) <= 0){
HDfprintf(stderr, "bad chunksize %s, must be a positive integer\n", optarg);
usage(progname_g);
Hgoto_error(-1);
};
break;
case '?':
HDfprintf(stderr, "getopt returned '%c'.\n", c);
Hgoto_error(-1);
default:
HDfprintf(stderr, "getopt returned unexpected value.\n");
HDfprintf(stderr, "Unexpected value is %d\n", c);
Hgoto_error(-1);
}
}
/* set test file name if not given */
if (!filename_g){
/* default data file name is <progname>.h5 */
if ((filename_g = (char*)HDmalloc(HDstrlen(progname_g)+4))==NULL) {
HDfprintf(stderr, "malloc: failed\n");
Hgoto_error(-1);
};
HDstrcpy(filename_g, progname_g);
HDstrcat(filename_g, ".h5");
}
done:
/* All done. */
return(ret_value);
} /* parse_option() */
/* Show parameters used for this use case */
static void
show_parameters(void)
{
HDprintf("===Parameters used:===\n");
HDprintf("chunk dims=(%llu, %llu, %llu)\n", (unsigned long long)chunkdims_g[0],
(unsigned long long)chunkdims_g[1], (unsigned long long)chunkdims_g[2]);
HDprintf("dataset max dims=(%llu, %llu, %llu)\n", (unsigned long long)max_dims_g[0],
(unsigned long long)max_dims_g[1], (unsigned long long)max_dims_g[2]);
HDprintf("number of planes to write=%llu\n", (unsigned long long)nplanes_g);
HDprintf("using SWMR mode=%s\n", use_swmr_g ? "yes(1)" : "no(0)");
HDprintf("data filename=%s\n", filename_g);
HDprintf("===Parameters shown===\n");
} /* show_parameters() */
/*
* Setup parameters for the use case.
* Return: 0 succeed; -1 fail.
*/
static int
setup_parameters(int argc, char * const argv[])
{
/* use case defaults */
chunksize_g = Chunksize_DFT;
use_swmr_g = 1; /* use swmr open */
chunkplanes_g = 1;
/* parse options */
if (parse_option(argc, argv) < 0){
return(-1);
}
/* set chunk dims */
chunkdims_g[0] = chunkplanes_g;
chunkdims_g[1]= chunkdims_g[2] = chunksize_g;
/* set dataset initial and max dims */
dims_g[0] = 0;
max_dims_g[0] = H5S_UNLIMITED;
dims_g[1] = dims_g[2] = max_dims_g[1] = max_dims_g[2] = chunksize_g;
/* set nplanes */
if (nplanes_g == 0)
nplanes_g = chunksize_g;
/* show parameters and return */
show_parameters();
return(0);
} /* setup_parameters() */
/*
* Create the skeleton use case file for testing.
* It has one 3d dataset using chunked storage.
* The dataset is (unlimited, chunksize, chunksize).
* Dataset type is 2 bytes integer.
* It starts out "empty", i.e., first dimension is 0.
*
* Return: 0 succeed; -1 fail.
*/
static int
create_file(void)
{
hsize_t dims[3]; /* Dataset starting dimensions */
hid_t fid; /* File ID for new HDF5 file */
hid_t dcpl; /* Dataset creation property list */
hid_t sid; /* Dataspace ID */
hid_t dsid; /* Dataset ID */
hid_t fapl; /* File access property list */
H5D_chunk_index_t idx_type; /* Chunk index type */
/* Create the file */
if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
return -1;
if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
return -1;
if((fid = H5Fcreate(filename_g, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
return -1;
/* Set up dimension sizes */
dims[0] = 0;
dims[1] = dims[2] = max_dims_g[1];
/* Create dataspace for creating datasets */
if((sid = H5Screate_simple(3, dims, max_dims_g)) < 0)
return -1;
/* Create dataset creation property list */
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
return -1;
if(H5Pset_chunk(dcpl, 3, chunkdims_g) < 0)
return -1;
/* create dataset of progname */
if((dsid = H5Dcreate2(fid, progname_g, UC_DATATYPE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
return -1;
/* Check that the chunk index type is not version 1 B-tree.
* Version 1 B-trees are not supported under SWMR.
*/
if(H5D__layout_idx_type_test(dsid, &idx_type) < 0)
return -1;
if(idx_type == H5D_CHUNK_IDX_BTREE) {
HDfprintf(stderr, "ERROR: Chunk index is version 1 B-tree: aborting.\n");
return -1;
}
/* Close everything */
if(H5Dclose(dsid) < 0)
return -1;
if(H5Pclose(fapl) < 0)
return -1;
if(H5Pclose(dcpl) < 0)
return -1;
if(H5Sclose(sid) < 0)
return -1;
if(H5Fclose(fid) < 0)
return -1;
return 0;
} /* create_file() */
/*
* Append planes, each of (1,2*chunksize,2*chunksize) to the dataset.
* In other words, 4 chunks are appended to the dataset at a time.
* Fill each plane with the plane number and then write it at the nth plane.
* Increase the plane number and repeat till the end of dataset, when it
* reaches chunksize long. End product is a (2*chunksize)^3 cube.
*
* Return: 0 succeed; -1 fail.
*/
static int
write_file(void)
{
hid_t fid; /* File ID for new HDF5 file */
hid_t dsid; /* dataset ID */
hid_t fapl; /* File access property list */
hid_t dcpl; /* Dataset creation property list */
char *name;
UC_CTYPE *buffer, *bufptr; /* data buffer */
hsize_t cz=chunksize_g; /* Chunk size */
hid_t f_sid; /* dataset file space id */
hid_t m_sid; /* memory space id */
int rank; /* rank */
hsize_t chunk_dims[3]; /* Chunk dimensions */
hsize_t dims[3]; /* Dataspace dimensions */
hsize_t memdims[3]; /* Memory space dimensions */
hsize_t start[3] = {0,0,0}, count[3]; /* Hyperslab selection values */
hbool_t disabled; /* Object's disabled status */
hsize_t i, j, k;
name = filename_g;
/* Open the file */
if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
return -1;
if(use_swmr_g)
if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
return -1;
if((fid = H5Fopen(name, H5F_ACC_RDWR | (use_swmr_g ? H5F_ACC_SWMR_WRITE : 0), fapl)) < 0){
HDfprintf(stderr, "H5Fopen failed\n");
return -1;
}
/* Open the dataset of the program name */
if((dsid = H5Dopen2(fid, progname_g, H5P_DEFAULT)) < 0){
HDfprintf(stderr, "H5Dopen2 failed\n");
return -1;
}
/* Disabled mdc flushed for the dataset */
if(H5Odisable_mdc_flushes(dsid) < 0) {
HDfprintf(stderr, "H5Odisable_mdc_flushes failed\n");
return -1;
}
/* Get mdc disabled status of the dataset */
if(H5Oare_mdc_flushes_disabled(dsid, &disabled) < 0) {
HDfprintf(stderr, "H5Oare_mdc_flushes_disabled failed\n");
return -1;
} else if(disabled)
HDprintf("Dataset has disabled mdc flushes.\n");
else
HDprintf("Dataset should have disabled its mdc flushes.\n");
/* Find chunksize used */
if ((dcpl = H5Dget_create_plist(dsid)) < 0){
HDfprintf(stderr, "H5Dget_create_plist failed\n");
return -1;
}
if (H5D_CHUNKED != H5Pget_layout(dcpl)){
HDfprintf(stderr, "storage layout is not chunked\n");
return -1;
}
if ((rank = H5Pget_chunk(dcpl, 3, chunk_dims)) != 3){
HDfprintf(stderr, "storage rank is not 3\n");
return -1;
}
/* verify chunk_dims against set paramenters */
if (chunk_dims[0]!= chunkdims_g[0] || chunk_dims[1] != cz || chunk_dims[2] != cz){
HDfprintf(stderr, "chunk size is not as expected. Got dims=(%llu,%llu,%llu)\n",
(unsigned long long)chunk_dims[0], (unsigned long long)chunk_dims[1],
(unsigned long long)chunk_dims[2]);
return -1;
}
/* allocate space for data buffer 1 X dims[1] X dims[2] of UC_CTYPE */
memdims[0]=1;
memdims[1] = dims_g[1];
memdims[2] = dims_g[2];
if ((buffer=(UC_CTYPE*)HDmalloc((size_t)memdims[1]*(size_t)memdims[2]*sizeof(UC_CTYPE)))==NULL) {
HDfprintf(stderr, "malloc: failed\n");
return -1;
};
/*
* Get dataset rank and dimension.
*/
f_sid = H5Dget_space(dsid); /* Get filespace handle first. */
rank = H5Sget_simple_extent_ndims(f_sid);
if (rank != UC_RANK){
HDfprintf(stderr, "rank(%d) of dataset does not match\n", rank);
return -1;
}
if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0){
HDfprintf(stderr, "H5Sget_simple_extent_dims got error\n");
return -1;
}
HDprintf("dataset rank %d, dimensions %llu x %llu x %llu\n",
rank, (unsigned long long)(dims[0]), (unsigned long long)(dims[1]),
(unsigned long long)(dims[2]));
/* verify that file space dims are as expected and are consistent with memory space dims */
if (dims[0] != 0 || dims[1] != memdims[1] || dims[2] != memdims[2]){
HDfprintf(stderr, "dataset is not empty. Got dims=(%llu,%llu,%llu)\n",
(unsigned long long)dims[0], (unsigned long long)dims[1],
(unsigned long long)dims[2]);
return -1;
}
/* setup mem-space for buffer */
if ((m_sid=H5Screate_simple(rank, memdims, NULL))<0){
HDfprintf(stderr, "H5Screate_simple for memory failed\n");
return -1;
};
/* write planes */
count[0]=1;
count[1]=dims[1];
count[2]=dims[2];
for (i=0; i<nplanes_g; i++){
/* fill buffer with value i+1 */
bufptr = buffer;
for (j=0; j<dims[1]; j++)
for (k=0; k<dims[2]; k++)
*bufptr++ = i;
/* extend the dataset by one for new plane */
dims[0]=i+1;
if(H5Dset_extent(dsid, dims) < 0){
HDfprintf(stderr, "H5Dset_extent failed\n");
return -1;
}
/* Get the dataset's dataspace */
if((f_sid = H5Dget_space(dsid)) < 0){
HDfprintf(stderr, "H5Dset_extent failed\n");
return -1;
}
start[0]=i;
/* Choose the next plane to write */
if(H5Sselect_hyperslab(f_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0){
HDfprintf(stderr, "Failed H5Sselect_hyperslab\n");
return -1;
}
/* Write plane to the dataset */
if(H5Dwrite(dsid, UC_DATATYPE, m_sid, f_sid, H5P_DEFAULT, buffer) < 0){
HDfprintf(stderr, "Failed H5Dwrite\n");
return -1;
}
/* Flush the dataset for every "chunkplanes_g" planes */
if(!((i + 1) % (hsize_t)chunkplanes_g)) {
if(H5Dflush(dsid) < 0) {
HDfprintf(stderr, "Failed to H5Dflush dataset\n");
return -1;
}
}
}
if(H5Dflush(dsid) < 0) {
HDfprintf(stderr, "Failed to H5Dflush dataset\n");
return -1;
}
/* Enable mdc flushes for the dataset */
/* Closing the dataset later will enable mdc flushes automatically if this is not done */
if(disabled)
if(H5Oenable_mdc_flushes(dsid) < 0) {
HDfprintf(stderr, "Failed to H5Oenable_mdc_flushes\n");
return -1;
}
/* Done writing. Free/Close all resources including data file */
HDfree(buffer);
if(H5Dclose(dsid) < 0){
HDfprintf(stderr, "Failed to close datasete\n");
return -1;
}
if(H5Sclose(m_sid) < 0){
HDfprintf(stderr, "Failed to close memory space\n");
return -1;
}
if(H5Sclose(f_sid) < 0){
HDfprintf(stderr, "Failed to close file space\n");
return -1;
}
if(H5Pclose(fapl) < 0){
HDfprintf(stderr, "Failed to property list\n");
return -1;
}
if(H5Fclose(fid) < 0){
HDfprintf(stderr, "Failed to close file id\n");
return -1;
}
return 0;
} /* write_file() */
/* Overall Algorithm:
* Parse options from user;
* Generate/pre-created test files needed and close it;
* Write to the file.
*/
int
main(int argc, char *argv[])
{
int ret_value = 0;
/* initialization */
if(setup_parameters(argc, argv) < 0)
Hgoto_error(1);
/* ============*/
/* Create file */
/* ============*/
HDprintf("Creating skeleton data file for testing H5Odisable_mdc_flushes()...\n");
if(create_file() < 0) {
HDfprintf(stderr, "***encounter error\n");
Hgoto_error(1);
} /* end if */
else
HDprintf("File created.\n");
HDprintf("writing to the file\n");
if(write_file() < 0) {
HDfprintf(stderr, "write_file encountered error\n");
Hgoto_error(1);
}
done:
/* Print result and exit */
if(ret_value != 0)
HDprintf("Error(s) encountered\n");
else
HDprintf("All passed\n");
return(ret_value);
}
#else /* H5_HAVE_FORK */
int
main(void)
{
HDfprintf(stderr, "Non-POSIX platform. Skipping.\n");
HDexit(EXIT_SUCCESS);
} /* end main() */
#endif /* H5_HAVE_FORK */
Reference in New Issue View Git Blame Copy Permalink