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89fbe00dec
* commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
334 lines
11 KiB
Java
334 lines
11 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNotNull;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.File;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5R {
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@Rule public TestName testname = new TestName();
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private static final String H5_FILE = "testH5R.h5";
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private static final int DIM_X = 4;
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private static final int DIM_Y = 6;
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long H5fid = -1;
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long H5dsid = -1;
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long H5did = -1;
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long H5gid = -1;
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long H5did2 = -1;
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long[] H5dims = { DIM_X, DIM_Y };
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private final void _deleteFile(String filename) {
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File file = null;
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try {
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file = new File(filename);
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}
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catch (Throwable err) {}
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if (file.exists()) {
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try {file.delete();} catch (SecurityException e) {}
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}
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}
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private final long _createDataset(long fid, long dsid, String name, long dapl) {
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long did = -1;
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try {
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did = H5.H5Dcreate(fid, name,
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HDF5Constants.H5T_STD_I32BE, dsid,
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HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Dcreate: " + err);
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}
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assertTrue("TestH5R._createDataset: ",did > 0);
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return did;
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}
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private final long _createGroup(long fid, String name) {
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long gid = -1;
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try {
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gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Gcreate: " + err);
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}
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assertTrue("TestH5R._createGroup: ",gid > 0);
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return gid;
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}
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@Before
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public void createH5file()
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throws NullPointerException, HDF5Exception {
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assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
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System.out.print(testname.getMethodName());
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try {
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H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
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HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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H5dsid = H5.H5Screate_simple(2, H5dims, null);
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H5gid = _createGroup(H5fid, "Group1");
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H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT);
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H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5R.createH5file: " + err);
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}
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assertTrue("TestH5R.createH5file: H5.H5Fcreate: ",H5fid > 0);
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assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
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assertTrue("TestH5R.createH5file: _createDataset: ",H5did > 0);
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException {
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if (H5dsid > 0)
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try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
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if (H5did > 0)
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try {H5.H5Dclose(H5did);} catch (Exception ex) {}
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if (H5fid > 0)
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try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
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if (H5gid > 0)
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try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
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if (H5did2 > 0)
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try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
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_deleteFile(H5_FILE);
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System.out.println();
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}
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@Test
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public void testH5Rget_name() {
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long loc_id=H5fid;
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int ref_type=HDF5Constants.H5R_OBJECT;
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long ret_val=-1;
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byte[] ref=null;
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String[] name= {""};
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String objName = "/dset";
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try {
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ref = H5.H5Rcreate(H5fid, objName, ref_type, -1);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Rget_name:H5Rcreate " + err);
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}
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try {
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ret_val = H5.H5Rget_name(loc_id, ref_type, ref, name, 16);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Rget_name: " + err);
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}
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assertTrue("testH5Rget_name: H5Rget_name", ret_val>0);
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assertTrue("The name of the object: ", objName.equals(name[0]));
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}
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@Test
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public void testH5Rget_obj_type2() {
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int ref_type=HDF5Constants.H5R_OBJECT;
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byte[] ref=null;
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String objName = "/dset";
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int obj_type = -1;;
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try {
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ref = H5.H5Rcreate(H5fid, objName, ref_type, -1);
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}
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catch(Throwable err) {
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err.printStackTrace();
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}
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try {
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obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, ref);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Rget_obj_type2: " + err);
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}
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assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
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}
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@Test
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public void testH5Rcreate_refobj() {
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byte[] ref = null;
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try {
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ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Rcreate: " + err);
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}
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assertNotNull(ref);
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}
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@Test
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public void testH5Rcreate_regionrefobj() {
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byte[] ref = null;
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try {
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ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Rcreate: " + err);
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}
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assertNotNull(ref);
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}
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@Test
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public void testH5Rdereference() {
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byte[] ref1 = null;
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byte[] ref2 = null;
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long dataset_id = -1;
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long group_id = -1;
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try {
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//Create reference on dataset
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ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
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dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
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//Create reference on group
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ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
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group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
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assertNotNull(ref1);
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assertNotNull(ref2);
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assertTrue(dataset_id>=0);
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assertTrue(group_id>=0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5Rdereference " + err);
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}
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finally {
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try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
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try {H5.H5Gclose(group_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Rget_region() {
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byte[] ref = null;
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long dsid = -1;
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try {
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ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
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dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
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assertNotNull(ref);
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assertTrue(dsid>=0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5Rget_region: " + err);
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}
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finally {
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try {H5.H5Sclose(dsid);} catch (Exception ex) {}
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}
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Rget_name_Invalidreftype() throws Throwable {
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byte[] ref = null;
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String[] name= {""};
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ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
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H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name, 16);
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}
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@Test(expected = NullPointerException.class)
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public void testH5Rget_name_NULLreference() throws Throwable {
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byte[] ref = null;
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String[] name= {""};
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H5.H5Rget_name(H5fid, HDF5Constants.H5R_OBJECT, ref, name, 16);
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Rget_obj_type2_Invalidreftype() throws Throwable {
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byte[] ref = null;
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ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
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H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Rcreate_InvalidObjectName() throws Throwable {
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H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1);
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Rcreate_Invalidspace_id() throws Throwable {
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H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Rcreate_Invalidreftype() throws Throwable {
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H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Rgetregion_Invalidreftype() throws Throwable {
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byte[] ref = null;
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ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
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H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Rgetregion_Badreferencetype() throws Throwable {
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byte[] ref = null;
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ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
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H5.H5Rget_region(H5fid, HDF5Constants.H5R_OBJECT, ref);
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}
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@Test(expected = NullPointerException.class)
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public void testH5Rgetregion_Nullreference() throws Throwable {
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byte[] ref = null;
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H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
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}
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@Test(expected = NullPointerException.class)
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public void testH5Rdereference_Nullreference() throws Throwable {
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byte[] ref = null;
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H5.H5Rdereference(H5did2, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Rdereference_Invalidreference() throws Throwable {
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byte[] ref1 = null;
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byte[] ref2 = null;
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ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
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ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
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H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1);
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}
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}
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