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* fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
415 lines
19 KiB
Plaintext
415 lines
19 KiB
Plaintext
/**
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* \page H5AC-cache-config-t Metadata Cache Configuration
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* \tableofcontents
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*
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* \section gcf General configuration fields
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*
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* \par version
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* Integer field containing the version number of this version
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* of the H5AC_cache_config_t structure. Any instance of
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* H5AC_cache_config_t passed to the cache must have a known
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* version number, or an error will be flagged.
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*
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* \par rpt_fcn_enabled
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* \parblock
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* Boolean field used to enable and disable the default
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* reporting function. This function is invoked every time the
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* automatic cache resize code is run, and reports on its activities.
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*
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* This is a debugging function, and should normally be turned off.
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* \endparblock
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*
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* \par open_trace_file
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* \parblock
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* Boolean field indicating whether the trace_file_name
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* field should be used to open a trace file for the cache.
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*
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* \Emph{*** DEPRECATED ***} Use \Code{H5Fstart/stop} logging functions instead
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*
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* The trace file is a debugging feature that allow the capture of
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* top level metadata cache requests for purposes of debugging and/or
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* optimization. This field should normally be set to \c FALSE, as
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* trace file collection imposes considerable overhead.
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*
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* This field should only be set to \c TRUE when the trace_file_name
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* contains the full path of the desired trace file, and either
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* there is no open trace file on the cache, or the \c close_trace_file
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* field is also \c TRUE.
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* \endparblock
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*
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* \par close_trace_file
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* \parblock
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* Boolean field indicating whether the current trace
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* file (if any) should be closed.
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*
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* \Emph{*** DEPRECATED ***} Use \Code{H5Fstart/stop} logging functions instead
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*
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* See the above comments on the open_trace_file field. This field
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* should be set to \c FALSE unless there is an open trace file on the
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* cache that you wish to close.
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* \endparblock
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*
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* \par trace_file_name
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* \parblock
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* Full path of the trace file to be opened if the
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* open_trace_file field is \c TRUE.
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*
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* \Emph{*** DEPRECATED ***} Use \Code{H5Fstart/stop} logging functions instead
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*
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* In the parallel case, an ascii representation of the mpi rank of
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* the process will be appended to the file name to yield a unique
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* trace file name for each process.
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*
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* The length of the path must not exceed #H5AC__MAX_TRACE_FILE_NAME_LEN
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* characters.
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* \endparblock
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*
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* \par evictions_enabled
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* \parblock
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* Boolean field used to either report the current
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* evictions enabled status of the cache, or to set the cache's
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* evictions enabled status.
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*
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* In general, the metadata cache should always be allowed to
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* evict entries. However, in some cases it is advantageous to
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* disable evictions briefly, and thereby postpone metadata
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* writes. However, this must be done with care, as the cache
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* can grow quickly. If you do this, re-enable evictions as
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* soon as possible and monitor cache size.
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*
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* At present, evictions can only be disabled if automatic
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* cache resizing is also disabled (that is, \Code{(incr_mode ==
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* H5C_incr__off ) && ( decr_mode == H5C_decr__off )}). There
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* is no logical reason why this should be so, but it simplifies
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* implementation and testing, and I can't think of any reason
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* why it would be desirable. If you can think of one, I'll
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* revisit the issue. (JM)
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* \endparblock
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*
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* \par set_initial_size
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* Boolean flag indicating whether the size of the
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* initial size of the cache is to be set to the value given in
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* the initial_size field. If set_initial_size is \c FALSE, the
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* initial_size field is ignored.
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*
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* \par initial_size
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* If enabled, this field contain the size the cache is
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* to be set to upon receipt of this structure. Needless to say,
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* initial_size must lie in the closed interval \Code{[min_size, max_size]}.
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*
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* \par min_clean_fraction
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* \c double in the range 0 to 1 indicating the fraction
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* of the cache that is to be kept clean. This field is only used
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* in parallel mode. Typical values are 0.1 to 0.5.
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*
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* \par max_size
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* Maximum size to which the cache can be adjusted. The
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* supplied value must fall in the closed interval
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* \Code{[MIN_MAX_CACHE_SIZE, MAX_MAX_CACHE_SIZE]}. Also, \c max_size must
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* be greater than or equal to \c min_size.
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*
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* \par min_size
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* Minimum size to which the cache can be adjusted. The
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* supplied value must fall in the closed interval
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* \Code{[H5C__MIN_MAX_CACHE_SIZE, H5C__MAX_MAX_CACHE_SIZE]}. Also, \c min_size
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* must be less than or equal to \c max_size.
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*
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* \par epoch_length
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* \parblock
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* Number of accesses on the cache over which to collect
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* hit rate stats before running the automatic cache resize code,
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* if it is enabled.
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*
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* At the end of an epoch, we discard prior hit rate data and start
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* collecting afresh. The epoch_length must lie in the closed
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* interval \Code{[H5C__MIN_AR_EPOCH_LENGTH, H5C__MAX_AR_EPOCH_LENGTH]}.
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* \endparblock
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*
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*
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* \section csicf Cache size increase control fields
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*
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* \par incr_mode
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* Instance of the \c H5C_cache_incr_mode enumerated type whose
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* value indicates how we determine whether the cache size should be
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* increased. At present there are two possible values:
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* \li \c H5C_incr__off: Don't attempt to increase the size of the cache
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* automatically.\n
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* When this increment mode is selected, the remaining fields
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* in the cache size increase section ar ignored.
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* \li \c H5C_incr__threshold: Attempt to increase the size of the cache
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* whenever the average hit rate over the last epoch drops
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* below the value supplied in the \c lower_hr_threshold
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* field.\n
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* Note that this attempt will fail if the cache is already
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* at its maximum size, or if the cache is not already using
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* all available space.
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*
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* Note that you must set \c decr_mode to \c H5C_incr__off if you
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* disable metadata cache entry evictions.
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*
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* \par lower_hr_threshold
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* \parblock
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* Lower hit rate threshold. If the increment mode
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* (\c incr_mode) is \c H5C_incr__threshold and the hit rate drops below the
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* value supplied in this field in an epoch, increment the cache size by
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* \c size_increment. Note that cache size may not be incremented above
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* \c max_size, and that the increment may be further restricted by the
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* \c max_increment field if it is enabled.
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*
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* When enabled, this field must contain a value in the range [0.0, 1.0].
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* Depending on the \c incr_mode selected, it may also have to be less than
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* \c upper_hr_threshold.
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* \endparblock
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*
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* \par increment
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* \parblock
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* Double containing the multiplier used to derive the new
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* cache size from the old if a cache size increment is triggered.
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* The increment must be greater than 1.0, and should not exceed 2.0.
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*
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* The new cache size is obtained my multiplying the current max cache
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* size by the increment, and then clamping to \c max_size and to stay
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* within the \c max_increment as necessary.
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* \endparblock
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*
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* \par apply_max_increment
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* Boolean flag indicating whether the \c max_increment
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* field should be used to limit the maximum cache size increment.
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*
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* \par max_increment
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* If enabled by the \c apply_max_increment field described
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* above, this field contains the maximum number of bytes by which the
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* cache size can be increased in a single re-size.
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*
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* \par flash_incr_mode
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* \parblock
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* Instance of the \c H5C_cache_flash_incr_mode enumerated
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* type whose value indicates whether and by which algorithm we should
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* make flash increases in the size of the cache to accommodate insertion
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* of large entries and large increases in the size of a single entry.
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*
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* The addition of the flash increment mode was occasioned by performance
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* problems that appear when a local heap is increased to a size in excess
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* of the current cache size. While the existing re-size code dealt with
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* this eventually, performance was very bad for the remainder of the
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* epoch.
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*
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* At present, there are two possible values for the \c flash_incr_mode:
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*
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* \li \c H5C_flash_incr__off: Don't perform flash increases in the size of the cache.
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*
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* \li \c H5C_flash_incr__add_space: Let \c x be either the size of a newly
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* newly inserted entry, or the number of bytes by which the
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* size of an existing entry has been increased.\n
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* If \Code{x > flash_threshold * current max cache size},
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* increase the current maximum cache size by \Code{x * flash_multiple}
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* less any free space in the cache, and star a new epoch. For
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* now at least, pay no attention to the maximum increment.
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*
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* In both of the above cases, the flash increment pays no attention to
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* the maximum increment (at least in this first incarnation), but DOES
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* stay within max_size.
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*
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* With a little thought, it should be obvious that the above flash
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* cache size increase algorithm is not sufficient for all circumstances
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* -- for example, suppose the user round robins through
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* \Code{(1/flash_threshold) +1} groups, adding one data set to each on each
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* pass. Then all will increase in size at about the same time, requiring
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* the max cache size to at least double to maintain acceptable
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* performance, however the above flash increment algorithm will not be
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* triggered.
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*
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* Hopefully, the add space algorithms detailed above will be sufficient
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* for the performance problems encountered to date. However, we should
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* expect to revisit the issue.
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* \endparblock
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*
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* \par flash_multiple
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* Double containing the multiple described above in the
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* \c H5C_flash_incr__add_space section of the discussion of the
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* \c flash_incr_mode section. This field is ignored unless \c flash_incr_mode
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* is \c H5C_flash_incr__add_space.
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*
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* \par flash_threshold
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* Double containing the factor by which current max cache
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* size is multiplied to obtain the size threshold for the add_space flash
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* increment algorithm. The field is ignored unless \c flash_incr_mode is
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* \c H5C_flash_incr__add_space.
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*
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*
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* \section csdcf Cache size decrease control fields
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*
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* \par decr_mode
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* \parblock
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* Instance of the \c H5C_cache_decr_mode enumerated type whose
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* value indicates how we determine whether the cache size should be
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* decreased. At present there are four possibilities.
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*
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* \li \c H5C_decr__off: Don't attempt to decrease the size of the cache
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* automatically.\n
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* When this increment mode is selected, the remaining fields
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* in the cache size decrease section are ignored.
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* \li \c H5C_decr__threshold: Attempt to decrease the size of the cache
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* whenever the average hit rate over the last epoch rises
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* above the value supplied in the \c upper_hr_threshold
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* field.
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* \li \c H5C_decr__age_out: At the end of each epoch, search the cache for
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* entries that have not been accessed for at least the number
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* of epochs specified in the epochs_before_eviction field, and
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* evict these entries. Conceptually, the maximum cache size
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* is then decreased to match the new actual cache size. However,
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* this reduction may be modified by the \c min_size, the
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* \c max_decrement, and/or the \c empty_reserve.
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* \li \c H5C_decr__age_out_with_threshold: Same as age_out, but we only
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* attempt to reduce the cache size when the hit rate observed
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* over the last epoch exceeds the value provided in the
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* \c upper_hr_threshold field.
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*
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* Note that you must set \c decr_mode to \c H5C_decr__off if you
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* disable metadata cache entry evictions.
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* \endparblock
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*
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* \par upper_hr_threshold
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* \parblock
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* Upper hit rate threshold. The use of this field
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* varies according to the current \c decr_mode :
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*
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* \c H5C_decr__off or \c H5C_decr__age_out: The value of this field is
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* ignored.
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*
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* \li \c H5C_decr__threshold: If the hit rate exceeds this threshold in any
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* epoch, attempt to decrement the cache size by size_decrement.\n
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* Note that cache size may not be decremented below \c min_size.\n
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* Note also that if the \c upper_threshold is 1.0, the cache size\n
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* will never be reduced.
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*
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* \li \c H5C_decr__age_out_with_threshold: If the hit rate exceeds this
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* threshold in any epoch, attempt to reduce the cache size
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* by evicting entries that have not been accessed for more
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* than the specified number of epochs.
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* \endparblock
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*
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* \par decrement
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* \parblock
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* This field is only used when the decr_mode is
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* \c H5C_decr__threshold.
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*
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* The field is a double containing the multiplier used to derive the
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* new cache size from the old if a cache size decrement is triggered.
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* The decrement must be in the range 0.0 (in which case the cache will
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* try to contract to its minimum size) to 1.0 (in which case the
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* cache will never shrink).
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* \endparblock
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*
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* \par apply_max_decrement
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* Boolean flag used to determine whether decrements
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* in cache size are to be limited by the \c max_decrement field.
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*
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* \par max_decrement
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* Maximum number of bytes by which the cache size can be
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* decreased in a single re-size. Note that decrements may also be
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* restricted by the \c min_size of the cache, and (in age out modes) by
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* the \c empty_reserve field.
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*
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* \par epochs_before_eviction
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* \parblock
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* Integer field used in \c H5C_decr__age_out and
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* \c H5C_decr__age_out_with_threshold decrement modes.
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*
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* This field contains the number of epochs an entry must remain
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* unaccessed before it is evicted in an attempt to reduce the
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* cache size. If applicable, this field must lie in the range
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* \Code{[1, H5C__MAX_EPOCH_MARKERS]}.
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* \endparblock
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*
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* \par apply_empty_reserve
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* Boolean field controlling whether the empty_reserve
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* field is to be used in computing the new cache size when the
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* decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold.
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*
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* \par empty_reserve
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* \parblock
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* To avoid a constant racheting down of cache size by small
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* amounts in the \c H5C_decr__age_out and \c H5C_decr__age_out_with_threshold
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* modes, this field allows one to require that any cache size
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* reductions leave the specified fraction of unused space in the cache.
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*
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* The value of this field must be in the range [0.0, 1.0]. I would
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* expect typical values to be in the range of 0.01 to 0.1.
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* \endparblock
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*
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*
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* \section pcf Parallel Configuration Fields
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*
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* In PHDF5, all operations that modify metadata must be executed collectively.
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*
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* We used to think that this was enough to ensure consistency across the
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* metadata caches, but since we allow processes to read metadata individually,
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* the order of dirty entries in the LRU list can vary across processes,
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* which can result in inconsistencies between the caches.
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*
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* PHDF5 uses several strategies to prevent such inconsistencies in metadata,
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* all of which use the fact that the same stream of dirty metadata is seen
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* by all processes for purposes of synchronization. This is done by
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* having each process count the number of bytes of dirty metadata generated,
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* and then running a "sync point" whenever this count exceeds a user
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* specified threshold (see \c dirty_bytes_threshold below).
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*
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* The current metadata write strategy is indicated by the
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* \c metadata_write_strategy field. The possible values of this field, along
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* with the associated metadata write strategies are discussed below.
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*
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* \par dirty_bytes_threshold
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* \parblock
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* Threshold of dirty byte creation used to
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* synchronize updates between caches. (See above for outline and
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* motivation.)
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*
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* This value MUST be consistent across all processes accessing the
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* file. This field is ignored unless HDF5 has been compiled for
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* parallel.
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* \endparblock
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*
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* \par metadata_write_strategy
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* Integer field containing a code indicating the
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* desired metadata write strategy. The valid values of this field
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* are enumerated and discussed below:
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*
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* \li #H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY\n
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* When metadata_write_strategy is set to this value, only process
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* zero is allowed to write dirty metadata to disk. All other
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* processes must retain dirty metadata until they are informed at
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* a sync point that the dirty metadata in question has been written
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* to disk.\n
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* When the sync point is reached (or when there is a user generated
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* flush), process zero flushes sufficient entries to bring it into
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* compliance with its min clean size (or flushes all dirty entries in
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* the case of a user generated flush), broad casts the list of
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* entries just cleaned to all the other processes, and then exits
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* the sync point.\n
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* Upon receipt of the broadcast, the other processes mark the indicated
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* entries as clean, and leave the sync point as well.
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*
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* \li #H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED\n
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* In the distributed metadata write strategy, process zero still makes
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* the decisions as to what entries should be flushed, but the actual
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* flushes are distributed across the processes in the computation to
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* the extent possible.\n
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* In this strategy, when a sync point is triggered (either by dirty
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* metadata creation or manual flush), all processes enter a barrier.\n
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* On the other side of the barrier, process 0 constructs an ordered
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* list of the entries to be flushed, and then broadcasts this list
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* to the caches in all the processes.\n
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* All processes then scan the list of entries to be flushed, flushing
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* some, and marking the rest as clean. The algorithm for this purpose
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* ensures that each entry in the list is flushed exactly once, and
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* all are marked clean in each cache.\n
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* Note that in the case of a flush of the cache, no message passing
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* is necessary, as all processes have the same list of dirty entries,
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* and all of these entries must be flushed. Thus in this case it is
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* sufficient for each process to sort its list of dirty entries after
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* leaving the initial barrier, and use this list as if it had been
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* received from process zero.\n
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* To avoid possible messages from the past/future, all caches must
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* wait until all caches are done before leaving the sync point.
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*/ |