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---------------------- ./src/H5D.c Added additional elements to a variable initializer in H5Dvlen_get_buf_size() to shut up a warning message. Also added the API tracing call. ./src/H5F.c Added file opening optimizations. If the driver doesn't support the ability to determine when two file handles refer to the same file (like MPIO and GASS) then H5F_open() makes fewer calls to the driver's open callback. Also, if the tentative file access flags are the same as the original flags then H5F_open() makes fewer calls to the file device. ./src/H5FD.c ./src/H5FDprivate.h ./src/H5FDpublic.h Added H5FD_get_class() so the library can get information about what file driver callbacks are defined. This will be useful when more optimization functions are added to the VFL, such as for MPIO derived datatype I/O. ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDmpio.c ./src/H5FDmulti.c ./src/H5FDsec2.c The driver symbols (like H5FD_CORE, etc) are actually function calls. The functions were fixed to return correct values even after calling H5close(). ./src/H5FDmulti.c ./src/H5FDmulti.h Added support for opening a file when parts are missing (only if the caller explicitly allows that in the file access property list). Moved some common code sequences into macros or functions. Added better support for reopening files. All the application has to know is that the file is a multi file and the base name from which all the member names are created. More debugging output when the file is opened with the H5F_ACC_DEBUG flag. Fixed various bugs. ./src/H5Fistore.c Chunked raw data was accidently allocated as meta data instead of raw data. ./src/H5I.c The H5Iget_type() function fails when invoked with an old object ID (an ID which has been closed down). ./test/h5test.c Added an extra argument when setting the multi file access property lists so the test fails if it can't open one of the sub-files. ./tools/h5ls.c Improved the algorithm for deciding what file driver to use. It basically tries all of the predefined drivers and is now able to open family, split, and multi files without looking for special characters in the file name. Added `-e' and `--errors' switches which cause errors from libhdf5 to be reported on stderr in addition to the simple error message displayed by h5ls.
460 lines
16 KiB
C
460 lines
16 KiB
C
/*
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* Copyright © 1998 NCSA
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* All rights reserved.
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*
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* Programmer: Robb Matzke <matzke@llnl.gov>
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* Thursday, November 19, 1998
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*
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* Purpose: Provides support functions for most of the hdf5 tests cases.
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*
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*/
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#undef NDEBUG /*override -DNDEBUG */
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#include <h5test.h>
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/*
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* Define these environment variables or constants to influence functions in
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* this test support library. The environment variable is used in preference
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* to the cpp constant. If neither is defined then use some default value.
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*
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* HDF5_PREFIX: A string to add to the beginning of all file names.
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* This can be used to tell MPIO what driver to use
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* (e.g., "gfs:", "ufs:", or "nfs:") or to use a
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* different file system (e.g., "/tmp" or "/usr/tmp").
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* The prefix will be separated from the base file name
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* by a slash. See h5_fixname() for details.
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*
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* HDF5_DRIVER: This string describes what low level file driver to
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* use for HDF5 file access. The first word in the
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* value is the name of the driver and subsequent data
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* is interpreted according to the driver. See
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* h5_fileaccess() for details.
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*
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*/
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/*
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* These are the letters that are appended to the file name when generating
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* names for the split and multi drivers. They are:
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*
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* m: All meta data when using the split driver.
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* s: The userblock, superblock, and driver info block
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* b: B-tree nodes
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* r: Dataset raw data
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* g: Global heap
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* l: local heap (object names)
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* o: object headers
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*/
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static const char *multi_letters = "msbrglo";
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/*-------------------------------------------------------------------------
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* Function: h5_errors
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*
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* Purpose: Displays the error stack after printing "*FAILED*".
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*
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* Return: Success: 0
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*
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* Failure: -1
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*
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* Programmer: Robb Matzke
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* Wednesday, March 4, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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herr_t
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h5_errors(void UNUSED *client_data)
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{
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FAILED();
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H5Eprint (stdout);
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return 0;
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}
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/*-------------------------------------------------------------------------
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* Function: h5_cleanup
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*
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* Purpose: Cleanup temporary test files. The list of test files is in
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* `extern const char *FILENAMES[]' -- these are only the base
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* names. The file access property list is also closed.
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*
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* Return: Non-zero if cleanup actions were performed; zero otherwise.
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*
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* Programmer: Albert Cheng
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* May 28, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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int
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h5_cleanup(hid_t fapl)
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{
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char filename[1024];
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char temp[2048];
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int i, j;
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int retval=0;
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hid_t driver;
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if (!getenv("HDF5_NOCLEANUP")) {
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for (i=0; FILENAME[i]; i++) {
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if (NULL==h5_fixname(FILENAME[i], fapl, filename,
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sizeof filename)) {
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continue;
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}
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driver = H5Pget_driver(fapl);
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if (H5FD_FAMILY==driver) {
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for (j=0; /*void*/; j++) {
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HDsnprintf(temp, sizeof temp, filename, j);
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if (access(temp, F_OK)<0) break;
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remove(temp);
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}
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} else if (H5FD_CORE==driver) {
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/*void*/
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} else if (H5FD_MULTI==driver) {
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H5FD_mem_t mt;
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assert(strlen(multi_letters)==H5FD_MEM_NTYPES);
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for (mt=0; mt<H5FD_MEM_NTYPES; mt++) {
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HDsnprintf(temp, sizeof temp, "%s-%c.h5",
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filename, multi_letters[mt]);
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remove(temp); /*don't care if it fails*/
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}
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} else {
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remove(filename);
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}
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}
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retval=1;
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}
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H5Pclose(fapl);
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return retval;
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}
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/*-------------------------------------------------------------------------
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* Function: h5_reset
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*
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* Purpose: Reset the library by closing it.
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*
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* Return: void
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*
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* Programmer: Robb Matzke
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* Friday, November 20, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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void
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h5_reset(void)
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{
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char filename[1024];
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fflush(stdout);
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fflush(stderr);
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H5close();
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H5Eset_auto (h5_errors, NULL);
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/*
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* Cause the library to emit some diagnostics early so they don't
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* interfere with other formatted output.
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*/
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sprintf(filename, "/tmp/h5emit-%05d.h5", getpid());
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H5E_BEGIN_TRY {
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hid_t file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT,
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H5P_DEFAULT);
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hid_t grp = H5Gcreate(file, "emit", 0);
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H5Gclose(grp);
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H5Fclose(file);
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unlink(filename);
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} H5E_END_TRY;
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}
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/*-------------------------------------------------------------------------
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* Function: h5_fixname
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*
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* Purpose: Create a file name from a file base name like `test' and
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* return it through the FULLNAME (at most SIZE characters
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* counting the null terminator). The full name is created by
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* prepending the contents of HDF5_PREFIX (separated from the
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* base name by a slash) and appending a file extension based on
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* the driver supplied.
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*
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* Return: Success: The FULLNAME pointer.
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*
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* Failure: NULL if BASENAME or FULLNAME is the null
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* pointer or if FULLNAME isn't large enough for
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* the result.
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*
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* Programmer: Robb Matzke
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* Thursday, November 19, 1998
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*
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* Modifications:
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* Robb Matzke, 1999-08-03
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* Modified to use the virtual file layer.
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*-------------------------------------------------------------------------
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*/
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char *
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h5_fixname(const char *base_name, hid_t fapl, char *fullname, size_t size)
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{
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const char *prefix=NULL, *suffix=NULL;
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hid_t driver;
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if (!base_name || !fullname || size<1) return NULL;
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/* First use the environment variable, then try the constant */
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prefix = getenv("HDF5_PREFIX");
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#ifdef HDF5_PREFIX
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if (!prefix) prefix = HDF5_PREFIX;
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#endif
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/* Prepend the prefix value to the base name */
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if (prefix && *prefix) {
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if (HDsnprintf(fullname, size, "%s/%s", prefix, base_name)==(int)size) {
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return NULL; /*buffer is too small*/
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}
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} else if (strlen(base_name)>=size) {
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return NULL; /*buffer is too small*/
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} else {
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strcpy(fullname, base_name);
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}
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/* Append a suffix */
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if ((driver=H5Pget_driver(fapl))<0) return NULL;
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if (H5FD_FAMILY==driver) {
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suffix = "%05d.h5";
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} else if (H5FD_CORE==driver || H5FD_MULTI==driver) {
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suffix = NULL;
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} else {
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suffix = ".h5";
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}
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if (suffix) {
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if (strlen(fullname)+strlen(suffix)>=size) return NULL;
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strcat(fullname, suffix);
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}
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return fullname;
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}
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/*-------------------------------------------------------------------------
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* Function: h5_fileaccess
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*
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* Purpose: Returns a file access template which is the default template
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* but with a file driver set according to the constant or
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* environment variable HDF5_DRIVER
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*
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* Return: Success: A file access property list
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*
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* Failure: -1
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*
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* Programmer: Robb Matzke
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* Thursday, November 19, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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hid_t
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h5_fileaccess(void)
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{
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const char *val = NULL;
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const char *name;
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char s[1024];
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hid_t fapl = -1;
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hsize_t fam_size = 100*1024*1024; /*100 MB*/
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H5FD_mem_t mt;
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/* First use the environment variable, then the constant */
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val = getenv("HDF5_DRIVER");
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#ifdef HDF5_DRIVER
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if (!val) val = HDF5_DRIVER;
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#endif
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if ((fapl=H5Pcreate(H5P_FILE_ACCESS))<0) return -1;
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if (!val || !*val) return fapl; /*use default*/
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strncpy(s, val, sizeof s);
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s[sizeof(s)-1] = '\0';
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if (NULL==(name=strtok(s, " \t\n\r"))) return fapl;
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if (!strcmp(name, "sec2")) {
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/* Unix read() and write() system calls */
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if (H5Pset_fapl_sec2(fapl)<0) return -1;
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} else if (!strcmp(name, "core")) {
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/* In-core temporary file with 1MB increment */
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if (H5Pset_fapl_core(fapl, 1024*1024)<0) return -1;
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} else if (!strcmp(name, "split")) {
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/* Split meta data and raw data each using default driver */
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if (H5Pset_fapl_split(fapl,
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"-m.h5", H5P_DEFAULT,
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"-r.h5", H5P_DEFAULT)<0)
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return -1;
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} else if (!strcmp(name, "multi")) {
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/* Multi-file driver, general case of the split driver */
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H5FD_mem_t memb_map[H5FD_MEM_NTYPES];
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hid_t memb_fapl[H5FD_MEM_NTYPES];
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const char *memb_name[H5FD_MEM_NTYPES];
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char sv[H5FD_MEM_NTYPES][1024];
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haddr_t memb_addr[H5FD_MEM_NTYPES];
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memset(memb_map, 0, sizeof memb_map);
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memset(memb_fapl, 0, sizeof memb_fapl);
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memset(memb_name, 0, sizeof memb_name);
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memset(memb_addr, 0, sizeof memb_addr);
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assert(strlen(multi_letters)==H5FD_MEM_NTYPES);
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for (mt=0; mt<H5FD_MEM_NTYPES; mt++) {
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memb_fapl[mt] = H5P_DEFAULT;
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sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]);
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memb_name[mt] = sv[mt];
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memb_addr[mt] = MAX(mt-1,0)*(HADDR_MAX/10);
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}
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if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name,
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memb_addr, FALSE)<0) {
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return -1;
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}
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} else if (!strcmp(name, "family")) {
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/* Family of files, each 1MB and using the default driver */
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if ((val=strtok(NULL, " \t\n\r"))) {
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fam_size = strtod(val, NULL) * 1024*1024;
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}
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if (H5Pset_fapl_family(fapl, fam_size, H5P_DEFAULT)<0) return -1;
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} else {
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/* Unknown driver */
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return -1;
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}
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return fapl;
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}
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/*-------------------------------------------------------------------------
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* Function: h5_no_hwconv
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*
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* Purpose: Turn off hardware data type conversions.
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*
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* Return: void
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*
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* Programmer: Robb Matzke
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* Friday, November 20, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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void
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h5_no_hwconv(void)
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{
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#if 1
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H5Tunregister(H5T_PERS_HARD, NULL, -1, -1, NULL);
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#else
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_uchar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_short);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_ushort);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_int);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_uint);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_long);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_ulong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_llong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_schar_ullong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_schar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_short);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_ushort);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_int);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_uint);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_long);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_ulong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_llong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uchar_ullong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_schar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_uchar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_ushort);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_int);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_uint);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_long);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_ulong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_llong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_short_ullong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_schar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_uchar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_short);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_int);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_uint);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_long);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_ulong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_llong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ushort_ullong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_schar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_uchar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_short);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_ushort);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_uint);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_long);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_ulong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_llong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_int_ullong);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_schar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_uchar);
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H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_short);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_ushort);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_int);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_long);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_ulong);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_llong);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_uint_ullong);
|
||
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_schar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_uchar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_short);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_ushort);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_int);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_uint);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_ulong);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_llong);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_long_ullong);
|
||
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_schar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_uchar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_short);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_ushort);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_int);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_uint);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_long);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_llong);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ulong_ullong);
|
||
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_schar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_uchar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_short);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_ushort);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_int);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_uint);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_long);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_ulong);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_llong_ullong);
|
||
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_schar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_uchar);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_short);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_ushort);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_int);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_uint);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_long);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_ulong);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_ullong_llong);
|
||
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_float_double);
|
||
H5Tunregister(H5T_PERS_DONTCARE, NULL, -1, -1, H5T_conv_double_float);
|
||
#endif
|
||
}
|