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hdf5/tools/h5repack/h5repacktst.c
Jonathan Kim a6b6b75a79 [svn-r19389] Purpose: 
Fix for Bug1896 h5repack - changing layout to COMPACT does not work

Description:
Make h5repack be able to convert a layout to COMPACT for small size dataset as default.  Also add verifying layout changes in our test script.

Tested:
 jam, amani, heiwa
2010-09-15 13:32:07 -05:00

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "h5repack.h"
#include "h5test.h"
#include "h5diff.h"
#include "h5tools.h"
#define GOERROR {H5_FAILED(); goto error;}
/* fill value test */
#define FNAME0 "h5repack_fill.h5"
#define FNAME0OUT "h5repack_fill_out.h5"
/* HDF5 objects and all dataset datatypes */
#define FNAME1 "h5repack_objs.h5"
#define FNAME1OUT "h5repack_objs_out.h5"
/* attributes, all datatypes */
#define FNAME2 "h5repack_attr.h5"
#define FNAME2OUT "h5repack_attr_out.h5"
/* hard links */
#define FNAME3 "h5repack_hlink.h5"
#define FNAME3OUT "h5repack_hlink_out.h5"
/* layout */
#define FNAME4 "h5repack_layout.h5"
#define FNAME4OUT "h5repack_layout_out.h5"
/* H5D_ALLOC_TIME_EARLY */
#define FNAME5 "h5repack_early.h5"
#define FNAME5OUT "h5repack_early_out.h5"
#define FNAME6 "h5repack_early2.h5"
#ifdef H5_HAVE_FILTER_SZIP
/* SZIP filter */
#define FNAME7 "h5repack_szip.h5"
#define FNAME7OUT "h5repack_szip_out.h5"
#endif
/* GZIP filter */
#define FNAME8 "h5repack_deflate.h5"
#define FNAME8OUT "h5repack_deflate_out.h5"
/* GZIP filter */
#define FNAME9 "h5repack_shuffle.h5"
#define FNAME9OUT "h5repack_shuffle_out.h5"
/* Fletcher filter */
#define FNAME10 "h5repack_fletcher.h5"
#define FNAME10OUT "h5repack_fletcher_out.h5"
/* All filters */
#define FNAME11 "h5repack_filters.h5"
#define FNAME11OUT "h5repack_filters_out.h5"
/* NBit filter */
#define FNAME12 "h5repack_nbit.h5"
#define FNAME12OUT "h5repack_nbit_out.h5"
/* Scale Offset filter */
#define FNAME13 "h5repack_soffset.h5"
#define FNAME13OUT "h5repack_soffset_out.h5"
/* Big file to test read by hyperslabs */
#define FNAME14 "h5repack_big.h5"
#define FNAME14OUT "h5repack_big_out.h5"
/* external file */
#define FNAME15 "h5repack_ext.h5"
#define FNAME15OUT "h5repack_ext_out.h5"
/* File w/userblock */
#define FNAME16 "h5repack_ub.h5"
#define FNAME16OUT "h5repack_ub_out.h5"
/* Named datatypes */
#define FNAME17 "h5repack_named_dtypes.h5"
#define FNAME17OUT "h5repack_named_dtypes_out.h5"
#define FNAME18 "h5repack_layout2.h5"
#define FNAME18OUT "h5repack_layout2_out.h5"
#define FNAME_UB "ublock.bin"
/* obj and region references */
#define FNAME_REF "h5repack_refs.h5"
/* obj and region references in attr of compound and vlen type */
#define FNAME_ATTR_REF "h5repack_attr_refs.h5"
const char *H5REPACK_FILENAMES[] = {
"h5repack_big_out",
NULL
};
#define H5REPACK_EXTFILE "h5repack_ext.bin"
/* Name of tool */
#define PROGRAMNAME "h5repacktst"
#define DIM1 40
#define DIM2 20
#define CDIM1 DIM1/2
#define CDIM2 DIM2/2
#define RANK 2
/* Size of userblock (for userblock test) */
#define USERBLOCK_SIZE 2048
/* obj and region references */
#define NAME_OBJ_DS1 "Dset1"
#define NAME_OBJ_GRP "Group"
#define NAME_OBJ_NDTYPE "NamedDatatype"
#define NAME_OBJ_DS2 "Dset2"
#define REG_REF_DS1 "Dset_REGREF"
/*-------------------------------------------------------------------------
* prototypes
*-------------------------------------------------------------------------
*/
static int make_all_objects(hid_t loc_id);
static int make_attributes(hid_t loc_id);
static int make_hlinks(hid_t loc_id);
static int make_early(void);
static int make_layout(hid_t loc_id);
static int make_layout2(hid_t loc_id);
#ifdef H5_HAVE_FILTER_SZIP
static int make_szip(hid_t loc_id);
#endif /* H5_HAVE_FILTER_SZIP */
static int make_deflate(hid_t loc_id);
static int make_shuffle(hid_t loc_id);
static int make_fletcher32(hid_t loc_id);
static int make_nbit(hid_t loc_id);
static int make_scaleoffset(hid_t loc_id);
static int make_all_filters(hid_t loc_id);
static int make_fill(hid_t loc_id);
static int make_big(hid_t loc_id);
static int make_testfiles(void);
static int write_dset_in(hid_t loc_id,const char* dset_name,hid_t file_id,int make_diffs );
static int write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs );
static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *dset_name,hid_t tid,void *buf );
static int make_dset(hid_t loc_id,const char *name,hid_t sid,hid_t dcpl,void *buf);
static int make_attr(hid_t loc_id,int rank,hsize_t *dims,const char *attr_name,hid_t tid,void *buf);
static int make_dset_reg_ref(hid_t loc_id);
static int make_external(hid_t loc_id);
static int make_userblock(void);
static int verify_userblock( const char* filename);
static int make_userblock_file(void);
static int make_named_dtype(hid_t loc_id);
static int make_references(hid_t loc_id);
static int make_complex_attr_references(hid_t loc_id);
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: Executes h5repack tests
*
* Return: Success: zero
* Failure: 1
*
* Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
* January, 6, 2004
*
*-------------------------------------------------------------------------
*/
int main (void)
{
pack_opt_t pack_options;
diff_opt_t diff_options;
hsize_t fs_size = 0; /* free space section threshold */
H5F_file_space_type_t fs_type = H5F_FILE_SPACE_DEFAULT; /* file space handling strategy */
#if defined (H5_HAVE_FILTER_SZIP)
int szip_can_encode = 0;
#endif
/* initialize */
memset(&diff_options, 0, sizeof (diff_opt_t));
memset(&pack_options, 0, sizeof (pack_opt_t));
/* run tests */
puts("Testing h5repack:");
/* make the test files */
TESTING(" generating datasets");
if (make_testfiles() < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* Format of the tests:
*
* 1) make a copy of the file with h5repack
* 2) use the h5diff function to compare the input and output file
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* file with fill values
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (fill values)");
/* fs_type = 0; fs_size = 0 */
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME0,FNAME0OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME0, FNAME0OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME0,FNAME0OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* file with all kinds of dataset datatypes
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (all datatypes)");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME1,FNAME1OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* file with attributes
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (attributes)");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME2,FNAME2OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME2, FNAME2OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME2,FNAME2OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* file with hardlinks
*-------------------------------------------------------------------------
*/
TESTING(" copy of datasets (hardlinks)");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME3,FNAME3OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME3, FNAME3OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME3,FNAME3OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* alloc early test
*-------------------------------------------------------------------------
*/
TESTING(" copy of allocation early file");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME5,FNAME5OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME5, FNAME5OUT, &pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* the remaining files differ in the dcpl's
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* deflate
*-------------------------------------------------------------------------
*/
TESTING(" adding deflate filter");
#ifdef H5_HAVE_FILTER_DEFLATE
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding deflate filter to all");
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("GZIP=1",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* SZIP
*-------------------------------------------------------------------------
*/
TESTING(" adding szip filter");
#if defined (H5_HAVE_FILTER_SZIP)
if (h5tools_can_encode(H5Z_FILTER_SZIP) >0) {
szip_can_encode = 1;
}
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset2:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding szip filter to all");
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("SZIP=8,NN",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" addding shuffle filter");
#ifdef H5_HAVE_FILTER_SHUFFLE
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" addding shuffle filter to all");
#ifdef H5_HAVE_FILTER_SHUFFLE
/* fs_type = H5F_FILE_SPACE_ALL_PERSIST; fs_size = 1 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack_addfilter("SHUF",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" adding checksum filter");
#ifdef H5_HAVE_FILTER_FLETCHER32
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset1:FLET",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding checksum filter to all");
#ifdef H5_HAVE_FILTER_FLETCHER32
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("FLET",&pack_options) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" filter queue fletcher, shuffle, deflate, szip");
/*-------------------------------------------------------------------------
* add some filters
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options) < 0)
GOERROR;
#if defined (H5_HAVE_FILTER_FLETCHER32)
if (h5repack_addfilter("dset1:FLET",&pack_options) < 0)
GOERROR;
#endif
#ifdef H5_HAVE_FILTER_SHUFFLE
if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0)
GOERROR;
#endif
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
if (h5repack_addfilter("dset1:SZIP=8,NN",&pack_options) < 0)
GOERROR;
}
#endif
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_addfilter("dset1:GZIP=1",&pack_options) < 0)
GOERROR;
#endif
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout chunked");
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
TESTING(" adding layout chunked to all");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout contiguous");
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout contiguous to all");
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
/*-------------------------------------------------------------------------
* do the same test for a file with filters (chunked)
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout compact");
/*-------------------------------------------------------------------------
* test an individual object option
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset1:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" adding layout compact to all");
/*-------------------------------------------------------------------------
* test all objects option
*-------------------------------------------------------------------------
*/
/* fs_type = H5F_FILE_SPACE_ALL; fs_size = 2 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack_addlayout("COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout compact to contiguous conversion");
/*-------------------------------------------------------------------------
* layout compact to contiguous conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_compact:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout compact to chunk conversion");
/*-------------------------------------------------------------------------
* layout compact to chunk conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout compact to compact conversion");
/*-------------------------------------------------------------------------
* layout compact to compact conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_compact:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout contiguous to compact conversion");
/*-------------------------------------------------------------------------
* layout contiguous to compact conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout contiguous to chunk conversion");
/*-------------------------------------------------------------------------
* layout contiguous to chunk conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout contiguous to contiguous conversion");
/*-------------------------------------------------------------------------
* layout contiguous to contiguous conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout chunked to compact conversion");
/*-------------------------------------------------------------------------
* layout chunked to compact conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_chunk:COMPA",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout chunked to contiguous conversion");
/*-------------------------------------------------------------------------
* layout chunked to contiguous conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_chunk:CONTI",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
TESTING(" layout chunked to chunk conversion");
/*-------------------------------------------------------------------------
* layout chunked to chunked conversion
*-------------------------------------------------------------------------
*/
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* the following tests assume the input files have filters
* FNAME7
* FNAME8
* FNAME9
* FNAME10
* FNAME11
*-------------------------------------------------------------------------
*/
TESTING(" copy of szip filter");
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
/* fs_type = H5F_FILE_SPACE_AGGR_VFD; fs_size = 3 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0)
GOERROR;
if (h5repack_cmp_pl(FNAME7,FNAME7OUT)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" removing szip filter");
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_szip:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" copy of deflate filter");
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing deflate filter");
#ifdef H5_HAVE_FILTER_DEFLATE
if (h5repack_init (&pack_options, 0, fs_type, ++fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_deflate:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of shuffle filter");
#ifdef H5_HAVE_FILTER_SHUFFLE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing shuffle filter");
#ifdef H5_HAVE_FILTER_SHUFFLE
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_shuffle:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of fletcher filter");
#ifdef H5_HAVE_FILTER_FLETCHER32
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing fletcher filter");
#ifdef H5_HAVE_FILTER_FLETCHER32
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of nbit filter");
#ifdef H5_HAVE_FILTER_NBIT
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing nbit filter");
#ifdef H5_HAVE_FILTER_NBIT
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_nbit:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" adding nbit filter");
#ifdef H5_HAVE_FILTER_NBIT
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_int31:NBIT",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" copy of scaleoffset filter");
#ifdef H5_HAVE_FILTER_SCALEOFFSET
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" removing scaleoffset filter");
#ifdef H5_HAVE_FILTER_SCALEOFFSET
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
TESTING(" adding scaleoffset filter");
#ifdef H5_HAVE_FILTER_SCALEOFFSET
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* file with all filters
* dset_all
* dset_deflate
* dset_szip
* dset_shuffle
* dset_fletcher32
*-------------------------------------------------------------------------
*/
TESTING(" filter conversion from deflate to szip");
#if defined (H5_HAVE_FILTER_SZIP) \
&& defined (H5_HAVE_FILTER_DEFLATE) \
&& defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
if (szip_can_encode) {
/* fs_type = H5F_FILE_SPACE_VFD; fs_size = 4 */
if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
TESTING(" filter conversion from szip to deflate");
#if defined (H5_HAVE_FILTER_SZIP) \
&& defined (H5_HAVE_FILTER_DEFLATE) \
&& defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
if (szip_can_encode) {
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
} else {
SKIPPED();
}
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test the NONE global option
*-------------------------------------------------------------------------
*/
TESTING(" removing all filters");
#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) \
&& defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("NONE",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test a big file
*-------------------------------------------------------------------------
*/
TESTING(" big file");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME14,FNAME14OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME14, FNAME14OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test external dataset
*-------------------------------------------------------------------------
*/
TESTING(" external datasets");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack(FNAME15,FNAME15OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME15,FNAME15OUT,NULL,NULL,&diff_options) > 0)
GOERROR;
if (h5repack_verify(FNAME15, FNAME15OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test file with userblock
*-------------------------------------------------------------------------
*/
TESTING(" file with userblock");
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if(h5repack(FNAME16, FNAME16OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME16, FNAME16OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME16, FNAME16OUT, &pack_options) <= 0)
GOERROR;
if(verify_userblock(FNAME16OUT) < 0)
GOERROR;
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test --latest options
*-------------------------------------------------------------------------
*/
TESTING(" latest file format options");
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
pack_options.latest=1;
pack_options.grp_compact=10;
pack_options.grp_indexed=5;
pack_options.msg_size[0] = 10;
pack_options.msg_size[1] = 20;
pack_options.msg_size[2] = 30;
pack_options.msg_size[3] = 40;
pack_options.msg_size[4] = 50;
if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) > 0)
GOERROR;
if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* test several global filters
*-------------------------------------------------------------------------
*/
TESTING(" several global filters");
#if defined (H5_HAVE_FILTER_DEFLATE) && defined (H5_HAVE_FILTER_SHUFFLE)
if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if (h5repack_addfilter("GZIP=1",&pack_options) < 0)
GOERROR;
if (h5repack_addfilter("SHUF",&pack_options) < 0)
GOERROR;
if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
GOERROR;
if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
GOERROR;
if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
GOERROR;
if (h5repack_end (&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test file with userblock
*-------------------------------------------------------------------------
*/
TESTING(" file with added userblock");
#ifdef H5_HAVE_FILTER_DEFLATE
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
/* add the options for a user block size and user block filename */
pack_options.ublock_size = USERBLOCK_SIZE;
pack_options.ublock_filename = FNAME_UB;
if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0)
GOERROR;
if(verify_userblock(FNAME8OUT) < 0)
GOERROR;
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test file with aligment
*-------------------------------------------------------------------------
*/
TESTING(" file with aligment");
#ifdef H5_HAVE_FILTER_DEFLATE
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
/* add the options for aligment */
pack_options.alignment = 1;
pack_options.threshold = 1;
if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0)
GOERROR;
/* verify aligment */
{
hsize_t threshold;
hsize_t alignment;
hid_t fapl;
hid_t fid;
if (( fid = H5Fopen(FNAME8OUT, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0 )
GOERROR;
if ((fapl = H5Fget_access_plist(fid)) < 0)
GOERROR;
if ( H5Pget_alignment(fapl, &threshold, &alignment ) < 0)
GOERROR;
if ( threshold != 1 )
GOERROR;
if ( alignment != 1 )
GOERROR;
if ( H5Pclose(fapl) < 0)
GOERROR;
if (H5Fclose(fid) < 0)
GOERROR;
}
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
#else
SKIPPED();
#endif
/*-------------------------------------------------------------------------
* test file with userblock
*-------------------------------------------------------------------------
*/
TESTING(" file with committed datatypes");
if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0)
GOERROR;
if(h5repack(FNAME17, FNAME17OUT, &pack_options) < 0)
GOERROR;
if(h5diff(FNAME17, FNAME17OUT, NULL, NULL, &diff_options) > 0)
GOERROR;
if(h5repack_verify(FNAME17, FNAME17OUT, &pack_options) <= 0)
GOERROR;
if(h5repack_end(&pack_options) < 0)
GOERROR;
PASSED();
/*-------------------------------------------------------------------------
* clean temporary test files
*-------------------------------------------------------------------------
*/
{
hid_t fapl;
/* setup */
h5_reset();
fapl = h5_fileaccess();
h5_cleanup(H5REPACK_FILENAMES, fapl);
}
puts("All h5repack tests passed.");
return 0;
error:
puts("***** H5REPACK TESTS FAILED *****");
return 1;
}
/*-------------------------------------------------------------------------
* Function: make_testfiles
*
* Purpose: make a test file with all types of HDF5 objects,
* datatypes and filters
*
*-------------------------------------------------------------------------
*/
static
int make_testfiles(void)
{
hid_t fid;
/*-------------------------------------------------------------------------
* create a file for general copy test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME0,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_fill(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create another file for general copy test (all datatypes)
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_all_objects(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for attributes copy test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_attributes(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for hard links test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_hlinks(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for layouts test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME4,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_layout(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for layout conversion test
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
if(make_layout2(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file for the H5D_ALLOC_TIME_EARLY test
*-------------------------------------------------------------------------
*/
if (make_early() < 0)
goto out;
/*-------------------------------------------------------------------------
* create a file with the SZIP filter
*-------------------------------------------------------------------------
*/
#ifdef H5_HAVE_FILTER_SZIP
if((fid = H5Fcreate(FNAME7,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_szip(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
#endif /* H5_HAVE_FILTER_SZIP */
/*-------------------------------------------------------------------------
* create a file with the deflate filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME8,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_deflate(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the shuffle filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME9,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_shuffle(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the fletcher32 filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME10,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_fletcher32(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with all the filters
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME11,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_all_filters(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the nbit filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME12,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_nbit(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with the scaleoffset filter
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME13,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_scaleoffset(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a big dataset
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME14,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_big(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with external dataset
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME15,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_external(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with userblock
*-------------------------------------------------------------------------
*/
if(make_userblock() < 0)
goto out;
/*-------------------------------------------------------------------------
* create a userblock file
*-------------------------------------------------------------------------
*/
if(make_userblock_file() < 0)
goto out;
/*-------------------------------------------------------------------------
* create a file with named datatypes
*-------------------------------------------------------------------------
*/
if((fid = H5Fcreate(FNAME17,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_named_dtype(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create obj and region reference type datasets (bug1814)
* add attribute with int type (bug1726)
* add attribute with obj and region reference type (bug1726)
*-------------------------------------------------------------------------*/
if((fid = H5Fcreate(FNAME_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
/* create reference type datasets */
if (make_references(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a file with obj and region references in attribute of compound and
* vlen datatype
*-------------------------------------------------------------------------*/
if((fid = H5Fcreate(FNAME_ATTR_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
return -1;
if (make_complex_attr_references(fid) < 0)
goto out;
if(H5Fclose(fid) < 0)
return -1;
return 0;
out:
H5Fclose(fid);
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_all_objects
*
* Purpose: make a test file with all types of HDF5 objects
*
*-------------------------------------------------------------------------
*/
static
int make_all_objects(hid_t loc_id)
{
hid_t did=-1;
hid_t gid=-1;
hid_t tid=-1;
hid_t rid=-1;
hid_t sid=-1;
hid_t gcplid=-1;
hsize_t dims[1]={2};
/* compound datatype */
typedef struct s_t
{
int a;
float b;
} s_t;
/*-------------------------------------------------------------------------
* H5G_DATASET
*-------------------------------------------------------------------------
*/
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "dset_referenced", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_GROUP
*-------------------------------------------------------------------------
*/
if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Gclose(gid) < 0)
goto out;
/* create a group "g2" with H5P_CRT_ORDER_TRACKED set */
if ((gcplid = H5Pcreate(H5P_GROUP_CREATE)) < 0)
goto out;
if (H5Pset_link_creation_order(gcplid, H5P_CRT_ORDER_TRACKED) < 0)
goto out;
if ((gid = H5Gcreate2(loc_id, "g2", H5P_DEFAULT, gcplid, H5P_DEFAULT)) < 0)
goto out;
if (H5Gclose(gid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_TYPE
*-------------------------------------------------------------------------
*/
/* create a compound datatype */
if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_INT) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT) < 0)
goto out;
if (H5Tcommit2(loc_id, "type", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_LINK
*-------------------------------------------------------------------------
*/
if (H5Lcreate_soft("dset", loc_id, "link", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_UDLINK
*-------------------------------------------------------------------------
*/
/* Create an external link. Other UD links are not supported by h5repack */
if (H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* write a series of datasetes at root
*-------------------------------------------------------------------------
*/
if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0)
goto out;
if (write_dset_in(rid,"dset_referenced",loc_id,0) < 0)
goto out;
if (H5Gclose(rid) < 0)
goto out;
/* close */
if (H5Dclose(did) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Pclose(gcplid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Dclose(did);
H5Gclose(gid);
H5Gclose(rid);
H5Sclose(sid);
H5Tclose(tid);
H5Pclose(gcplid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_attributes
*
* Purpose: make a test file with all types of attributes
*
*-------------------------------------------------------------------------
*/
static
int make_attributes(hid_t loc_id)
{
hid_t did=-1;
hid_t gid=-1;
hid_t rid=-1;
hid_t sid=-1;
hsize_t dims[1]={2};
/*-------------------------------------------------------------------------
* H5G_DATASET
*-------------------------------------------------------------------------
*/
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5G_GROUP
*-------------------------------------------------------------------------
*/
if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0)
goto out;
/*-------------------------------------------------------------------------
* write a series of attributes on the dataset, group, and root group
*-------------------------------------------------------------------------
*/
if ( write_attr_in(did,"dset",loc_id,0) < 0)
goto out;
if (write_attr_in(gid,"dset",loc_id,0) < 0)
goto out;
if (write_attr_in(rid,"dset",loc_id,0) < 0)
goto out;
/* close */
if (H5Dclose(did) < 0)
goto out;
if (H5Gclose(gid) < 0)
goto out;
if (H5Gclose(rid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Dclose(did);
H5Gclose(gid);
H5Gclose(rid);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_hlinks
*
* Purpose: make a test file with hard links
*
*-------------------------------------------------------------------------
*/
static
int make_hlinks(hid_t loc_id)
{
hid_t g1id=-1;
hid_t g2id=-1;
hid_t g3id=-1;
hsize_t dims[2]={3,2};
int buf[3][2]= {{1,1},{1,2},{2,2}};
/*-------------------------------------------------------------------------
* create a dataset and some hard links to it
*-------------------------------------------------------------------------
*/
if(write_dset(loc_id, 2, dims, "dset", H5T_NATIVE_INT, buf) < 0)
return -1;
if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link1 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
return -1;
if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link2 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
return -1;
if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link3 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
return -1;
/*-------------------------------------------------------------------------
* create a group and some hard links to it
*-------------------------------------------------------------------------
*/
if((g1id = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if((g2id = H5Gcreate2(g1id, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if((g3id = H5Gcreate2(g2id, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Lcreate_hard(loc_id, "g1", g2id, "link1 to g1", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if(H5Lcreate_hard(g1id, "g2", g3id, "link1 to g2", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/* close */
if (H5Gclose(g1id) < 0)
goto out;
if (H5Gclose(g2id) < 0)
goto out;
if (H5Gclose(g3id) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Gclose(g1id);
H5Gclose(g2id);
H5Gclose(g3id);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_szip
*
* Purpose: make a dataset with the SZIP filter
*
*-------------------------------------------------------------------------
*/
#ifdef H5_HAVE_FILTER_SZIP
static
int make_szip(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
unsigned szip_pixels_per_block=8;
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
int szip_can_encode = 0;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dcpl */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* SZIP
*-------------------------------------------------------------------------
*/
/* Make sure encoding is enabled */
if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1)
{
szip_can_encode = 1;
}
if (szip_can_encode)
{
/* set szip data */
if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
goto out;
if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0)
goto out;
}
else
{
/* WARNING? SZIP is decoder only, can't generate test files */
}
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
#endif /* H5_HAVE_FILTER_SZIP */
/*-------------------------------------------------------------------------
* Function: make_deflate
*
* Purpose: make a dataset with the deflate filter
*
*-------------------------------------------------------------------------
*/
static
int make_deflate(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
hobj_ref_t bufref[1]; /* reference */
hsize_t dims1r[1]={1};
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dcpl */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* GZIP
*-------------------------------------------------------------------------
*/
#if defined (H5_HAVE_FILTER_DEFLATE)
/* set deflate data */
if(H5Pset_deflate(dcpl, 9) < 0)
goto out;
if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0)
goto out;
/* create a reference to the dataset, test second seeep of file for references */
if (H5Rcreate(&bufref[0],loc_id,"dset_deflate",H5R_OBJECT,-1) < 0)
goto out;
if (write_dset(loc_id,1,dims1r,"ref",H5T_STD_REF_OBJ,bufref) < 0)
goto out;
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_shuffle
*
* Purpose: make a dataset with the shuffle filter
*
*-------------------------------------------------------------------------
*/
static
int make_shuffle(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dcpl */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* shuffle
*-------------------------------------------------------------------------
*/
#if defined (H5_HAVE_FILTER_SHUFFLE)
/* set the shuffle filter */
if (H5Pset_shuffle(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0)
goto out;
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_fletcher32
*
* Purpose: make a dataset with the fletcher32 filter
*
*-------------------------------------------------------------------------
*/
static
int make_fletcher32(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
/*-------------------------------------------------------------------------
* fletcher32
*-------------------------------------------------------------------------
*/
#if defined (H5_HAVE_FILTER_FLETCHER32)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set the checksum filter */
if (H5Pset_fletcher32(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0)
goto out;
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_nbit
*
* Purpose: make a dataset with the nbit filter
*
*-------------------------------------------------------------------------
*/
static
int make_nbit(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hid_t dtid;
hid_t dsid;
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
dtid = H5Tcopy(H5T_NATIVE_INT);
if (H5Tset_precision(dtid,(H5Tget_precision(dtid) - 1)) < 0)
{
H5Tclose(dtid);
goto out;
}
#if defined H5_HAVE_FILTER_NBIT
/* remove the filters from the dcpl */
if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0)
{
H5Tclose(dtid);
goto out;
}
if(H5Pset_nbit(dcpl) < 0) {
H5Tclose(dtid);
goto out;
}
if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Dclose(dsid);
if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) {
H5Tclose(dtid);
goto out;
}
if((dsid = H5Dcreate2(loc_id, "dset_int31", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Dclose(dsid);
#endif
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if (H5Tclose(dtid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_scaleoffset
*
* Purpose: make a dataset with the scaleoffset filter
*
*-------------------------------------------------------------------------
*/
static
int make_scaleoffset(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
hid_t dtid;
hid_t dsid;
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
dtid = H5Tcopy(H5T_NATIVE_INT);
#if defined (H5_HAVE_FILTER_SCALEOFFSET)
/* remove the filters from the dcpl */
if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Pset_scaleoffset(dcpl, H5Z_SO_INT, 31) < 0) {
H5Tclose(dtid);
goto out;
}
if((dsid = H5Dcreate2(loc_id, "dset_scaleoffset", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Dclose(dsid);
if((dsid = H5Dcreate2(loc_id, "dset_none", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
H5Tclose(dtid);
goto out;
}
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
H5Tclose(dtid);
goto out;
}
H5Tclose(dtid);
H5Dclose(dsid);
#endif
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_all_filters
*
* Purpose: make a file with all filters
*
*-------------------------------------------------------------------------
*/
static
int make_all_filters(hid_t loc_id)
{
hid_t dcpl; /* dataset creation property list */
hid_t sid; /* dataspace ID */
#if defined (H5_HAVE_FILTER_NBIT)
hid_t dtid;
hid_t dsid;
#endif /* H5_HAVE_FILTER_NBIT */
#if defined (H5_HAVE_FILTER_SZIP)
unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
unsigned szip_pixels_per_block=8;
#endif /* H5_HAVE_FILTER_SZIP */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
#if defined (H5_HAVE_FILTER_SZIP)
int szip_can_encode = 0;
#endif
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
/* set up chunk */
if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
#if defined (H5_HAVE_FILTER_SHUFFLE)
/* set the shuffle filter */
if (H5Pset_shuffle(dcpl) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_FLETCHER32)
/* set the checksum filter */
if (H5Pset_fletcher32(dcpl) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_SZIP)
if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1)
{
szip_can_encode = 1;
}
if (szip_can_encode)
{
/* set szip data */
if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
goto out;
} else {
/* WARNING? SZIP is decoder only, can't generate test data using szip */
}
#endif
#if defined (H5_HAVE_FILTER_DEFLATE)
/* set deflate data */
if(H5Pset_deflate(dcpl, 9) < 0)
goto out;
#endif
if (make_dset(loc_id,"dset_all",sid,dcpl,buf) < 0)
goto out;
#if defined (H5_HAVE_FILTER_FLETCHER32)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set the checksum filter */
if (H5Pset_fletcher32(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0)
goto out;
#endif
/* Make sure encoding is enabled */
#if defined (H5_HAVE_FILTER_SZIP)
if (szip_can_encode)
{
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set szip data */
if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
goto out;
if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0)
goto out;
} else
{
/* WARNING? SZIP is decoder only, can't generate test dataset */
}
#endif
#if defined (H5_HAVE_FILTER_SHUFFLE)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set the shuffle filter */
if (H5Pset_shuffle(dcpl) < 0)
goto out;
if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_DEFLATE)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
goto out;
/* set deflate data */
if(H5Pset_deflate(dcpl, 1) < 0)
goto out;
if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0)
goto out;
#endif
#if defined (H5_HAVE_FILTER_NBIT)
/* remove the filters from the dcpl */
if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0)
goto out;
/* set the shuffle filter */
if (H5Pset_nbit(dcpl) < 0)
goto out;
if ((dtid = H5Tcopy(H5T_NATIVE_INT)) < 0)
goto out;
if (H5Tset_precision(dtid, (H5Tget_precision(dtid) - 1)) < 0)
goto out;
if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
/* close */
if(H5Tclose(dtid) < 0)
return -1;
if(H5Dclose(dsid) < 0)
return -1;
#endif
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_early
*
* Purpose: create a file for the H5D_ALLOC_TIME_EARLY test
*
*-------------------------------------------------------------------------
*/
static
int make_early(void)
{
hsize_t dims[1] ={3000};
hsize_t cdims[1]={30};
hid_t fid=-1;
hid_t did=-1;
hid_t sid=-1;
hid_t tid=-1;
hid_t dcpl=-1;
int i;
char name[10];
int iter=100;
if ((fid = H5Fcreate(FNAME5, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
if (H5Fclose(fid) < 0)
goto out;
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if (H5Pset_chunk(dcpl, 1, cdims) < 0)
goto out;
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
goto out;
for(i = 0; i < iter; i++)
{
if ((fid = H5Fopen(FNAME5, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
goto out;
if ((did = H5Dcreate2(fid, "early", H5T_NATIVE_DOUBLE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0)
goto out;
sprintf(name, "%d", i);
if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Ldelete(fid, "early", H5P_DEFAULT) < 0)
goto out;
if (H5Fclose(fid) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* do the same without close/opening the file and creating the dataset
*-------------------------------------------------------------------------
*/
if ((fid = H5Fcreate(FNAME6, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return -1;
for(i = 0; i < iter; i++)
{
if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0)
goto out;
sprintf(name, "%d", i);
if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
}
if (H5Sclose(sid) < 0)
goto out;
if (H5Pclose(dcpl) < 0)
goto out;
if (H5Fclose(fid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Tclose(tid);
H5Pclose(dcpl);
H5Sclose(sid);
H5Dclose(did);
H5Fclose(fid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_layout
*
* Purpose: make several datasets with several layouts in location LOC_ID
*
*-------------------------------------------------------------------------
*/
static
int make_layout(hid_t loc_id)
{
hid_t dcpl=-1; /* dataset creation property list */
hid_t sid=-1; /* dataspace ID */
hsize_t dims[RANK]={DIM1,DIM2};
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
char name[6];
for (i=n=0; i<DIM1; i++)
{
for (j=0; j<DIM2; j++)
{
buf[i][j]=n++;
}
}
/*-------------------------------------------------------------------------
* make several dataset with no filters
*-------------------------------------------------------------------------
*/
for (i=0; i<4; i++)
{
sprintf(name,"dset%d",i+1);
if (write_dset(loc_id,RANK,dims,name,H5T_NATIVE_INT,buf) < 0)
return -1;
}
/*-------------------------------------------------------------------------
* make several dataset with several layout options
*-------------------------------------------------------------------------
*/
/* create a space */
if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
return -1;
/* create a dataset creation property list; the same DCPL is used for all dsets */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* H5D_COMPACT
*-------------------------------------------------------------------------
*/
if(H5Pset_layout (dcpl,H5D_COMPACT) < 0)
goto out;
if (make_dset(loc_id,"dset_compact",sid,dcpl,buf) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* H5D_CONTIGUOUS
*-------------------------------------------------------------------------
*/
if(H5Pset_layout (dcpl,H5D_CONTIGUOUS) < 0)
goto out;
if (make_dset(loc_id,"dset_contiguous",sid,dcpl,buf) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* H5D_CHUNKED
*-------------------------------------------------------------------------
*/
if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
goto out;
if (make_dset(loc_id,"dset_chunk",sid,dcpl,buf) < 0)
{
goto out;
}
/*-------------------------------------------------------------------------
* close space and dcpl
*-------------------------------------------------------------------------
*/
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(dcpl);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_layout2
*
* Purpose: create datasets with contiguous and chunked layouts:
*
* contig_small: < 1k, fixed dims datspace
* chunked_small_fixed: < 1k, fixed dims dataspace
*
*-------------------------------------------------------------------------
*/
#define S_DIM1 4
#define S_DIM2 10
#define CONTIG_S "contig_small"
#define CHUNKED_S_FIX "chunked_small_fixed"
static
int make_layout2(hid_t loc_id)
{
hid_t contig_dcpl = -1; /* dataset creation property list */
hid_t chunked_dcpl = -1; /* dataset creation property list */
int i, j, n; /* Local index variables */
int ret_value = -1; /* Return value */
hid_t s_sid = -1; /* dataspace ID */
hsize_t s_dims[RANK] = {S_DIM1,S_DIM2}; /* Dataspace (< 1 k) */
hsize_t chunk_dims[RANK] = {S_DIM1/2, S_DIM2/2}; /* Dimension sizes for chunks */
int s_buf[S_DIM1][S_DIM2]; /* Temporary buffer */
for(i = n = 0; i < S_DIM1; i++) {
for (j = 0; j < S_DIM2; j++) {
s_buf[i][j] = n++;
}
}
/* Create dataspaces */
if((s_sid = H5Screate_simple(RANK, s_dims, NULL)) < 0)
goto out;
/* Create contiguous datasets */
if((contig_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_layout(contig_dcpl, H5D_CONTIGUOUS) < 0)
goto out;
if(make_dset(loc_id, CONTIG_S, s_sid, contig_dcpl, s_buf) < 0)
goto out;
/* Create chunked datasets */
if((chunked_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_chunk(chunked_dcpl, RANK, chunk_dims) < 0)
goto out;
if(make_dset(loc_id, CHUNKED_S_FIX, s_sid, chunked_dcpl, s_buf) < 0)
goto out;
ret_value = 0;
out:
H5E_BEGIN_TRY {
H5Pclose(contig_dcpl);
H5Pclose(chunked_dcpl);
H5Sclose(s_sid);
} H5E_END_TRY;
return(ret_value);
} /* make_layout2() */
/*-------------------------------------------------------------------------
* Function: make a file with an integer dataset with a fill value
*
* Purpose: test copy of fill values
*
*-------------------------------------------------------------------------
*/
static
int make_fill(hid_t loc_id)
{
hid_t did=-1;
hid_t sid=-1;
hid_t dcpl;
hsize_t dims[2]={3,2};
int buf[3][2]= {{1,1},{1,2},{2,2}};
int fillvalue = 2;
/*-------------------------------------------------------------------------
* H5T_INTEGER, write a fill value
*-------------------------------------------------------------------------
*/
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue) < 0)
goto out;
if((sid = H5Screate_simple(2,dims,NULL)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "dset_fill", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
/* close */
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(sid);
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_big
*
* Purpose: used in test read by hyperslabs. Creates a 128MB dataset.
* Only 1 1024Kb hyperslab is written.
*
*-------------------------------------------------------------------------
*/
static
int make_big(hid_t loc_id)
{
hid_t did=-1;
hid_t f_sid=-1;
hid_t m_sid=-1;
hid_t tid;
hid_t dcpl;
hsize_t dims[1]={ H5TOOLS_MALLOCSIZE + 1}; /* dataset dimensions */
hsize_t hs_size[1]; /* hyperslab dimensions */
hsize_t hs_start[1]; /* hyperslab start */
hsize_t chunk_dims[1]={1024}; /* chunk dimensions */
size_t size;
size_t nelmts=(size_t)1024;
signed char fillvalue=-1;
signed char *buf=NULL;
/* write one 1024 byte hyperslab */
hs_start[0] = 0;
hs_size[0] = 1024;
/* create */
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_fill_value(dcpl, H5T_NATIVE_SCHAR, &fillvalue) < 0)
goto out;
if(H5Pset_chunk(dcpl, 1, chunk_dims) < 0)
goto out;
if((f_sid = H5Screate_simple(1,dims,NULL)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_SCHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0)
goto out;
if((tid = H5Dget_type(did)) < 0)
goto out;
if((size = H5Tget_size(tid))<=0)
goto out;
/* initialize buffer to 0 */
buf=(signed char *) calloc( nelmts, size);
if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0)
goto out;
if (H5Dwrite (did,H5T_NATIVE_SCHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0)
goto out;
free(buf);
buf=NULL;
/* close */
if(H5Sclose(f_sid) < 0)
goto out;
if(H5Sclose(m_sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Sclose(f_sid);
H5Sclose(m_sid);
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_external
*
* Purpose: create a external dataset
*
*-------------------------------------------------------------------------
*/
static
int make_external(hid_t loc_id)
{
hid_t did=-1;
hid_t sid=-1;
hid_t dcpl;
int buf[2]={1,2};
hsize_t cur_size[1]; /* data space current size */
hsize_t max_size[1]; /* data space maximum size */
hsize_t size;
cur_size[0] = max_size[0] = 2;
size = max_size[0] * sizeof(int);
/* create */
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if(H5Pset_external(dcpl, H5REPACK_EXTFILE, (off_t)0, size) < 0)
goto out;
if((sid = H5Screate_simple(1,cur_size, max_size)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "external", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
/* close */
if(H5Sclose(sid) < 0)
goto out;
if(H5Pclose(dcpl) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(dcpl);
H5Sclose(sid);
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_userblock
*
* Purpose: create a file for the userblock copying test
*
*-------------------------------------------------------------------------
*/
static int
make_userblock(void)
{
hid_t fid = -1;
hid_t fcpl = -1;
int fd = -1; /* File descriptor for writing userblock */
char ub[USERBLOCK_SIZE]; /* User block data */
ssize_t nwritten; /* # of bytes written */
size_t u; /* Local index variable */
/* Create file creation property list with userblock set */
if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
goto out;
if(H5Pset_userblock(fcpl, (hsize_t)USERBLOCK_SIZE) < 0)
goto out;
/* Create file with userblock */
if((fid = H5Fcreate(FNAME16, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0)
goto out;
if(H5Fclose(fid) < 0)
goto out;
/* Close file creation property list */
if(H5Pclose(fcpl) < 0)
goto out;
/* Initialize userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
ub[u] = 'a' + (u % 26);
/* Re-open HDF5 file, as "plain" file */
if((fd = HDopen(FNAME16, O_WRONLY, 0644)) < 0)
goto out;
/* Write userblock data */
nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE);
assert(nwritten == USERBLOCK_SIZE);
/* Close file */
HDclose(fd);
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(fcpl);
H5Fclose(fid);
} H5E_END_TRY;
if(fd > 0)
HDclose(fd);
return -1;
} /* end make_userblock() */
/*-------------------------------------------------------------------------
* Function: verify_userblock
*
* Purpose: Verify that the userblock was copied correctly
*
*-------------------------------------------------------------------------
*/
static int
verify_userblock( const char* filename)
{
hid_t fid = -1;
hid_t fcpl = -1;
int fd = -1; /* File descriptor for writing userblock */
char ub[USERBLOCK_SIZE]; /* User block data */
hsize_t ub_size = 0; /* User block size */
ssize_t nread; /* # of bytes read */
size_t u; /* Local index variable */
/* Open file with userblock */
if((fid = H5Fopen(filename, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
goto out;
/* Retrieve file creation property list & userblock size */
if((fcpl = H5Fget_create_plist(fid)) < 0)
goto out;
if(H5Pget_userblock(fcpl, &ub_size) < 0)
goto out;
/* Verify userblock size is correct */
if(ub_size != USERBLOCK_SIZE)
goto out;
/* Close file creation property list */
if(H5Pclose(fcpl) < 0)
goto out;
if(H5Fclose(fid) < 0)
goto out;
/* Re-open HDF5 file, as "plain" file */
if((fd = HDopen(filename, O_RDONLY, 0)) < 0)
goto out;
/* Read userblock data */
nread = HDread(fd, ub, (size_t)USERBLOCK_SIZE);
assert(nread == USERBLOCK_SIZE);
/* Verify userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
if(ub[u] != (char)('a' + (u % 26)))
goto out;
/* Close file */
HDclose(fd);
return 0;
out:
H5E_BEGIN_TRY {
H5Pclose(fcpl);
H5Fclose(fid);
} H5E_END_TRY;
if(fd > 0)
HDclose(fd);
return -1;
} /* end verify_userblock() */
/*-------------------------------------------------------------------------
* Function: make_userblock_file
*
* Purpose: create a file for the userblock add test
*
*-------------------------------------------------------------------------
*/
static int
make_userblock_file(void)
{
int fd = -1; /* File descriptor for writing userblock */
char ub[USERBLOCK_SIZE]; /* User block data */
ssize_t nwritten; /* # of bytes written */
size_t u; /* Local index variable */
/* initialize userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
ub[u] = 'a' + (u % 26);
/* open file */
if((fd = HDopen(FNAME_UB,O_WRONLY|O_CREAT|O_TRUNC, 0644 )) < 0)
goto out;
/* write userblock data */
nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE);
assert(nwritten == USERBLOCK_SIZE);
/* close file */
HDclose(fd);
return 0;
out:
if(fd > 0)
HDclose(fd);
return -1;
}
/*-------------------------------------------------------------------------
* Function: write_dset_in
*
* Purpose: write datasets in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int write_dset_in(hid_t loc_id,
const char* dset_name, /* for saving reference to dataset*/
hid_t file_id,
int make_diffs /* flag to modify data buffers */)
{
/* compound datatype */
typedef struct s_t
{
char a;
double b;
} s_t;
typedef enum
{
RED,
GREEN
} e_t;
hid_t did=-1;
hid_t sid=-1;
hid_t tid=-1;
hid_t pid=-1;
int val, i, j, k, n;
float f;
/* create 1D attributes with dimension [2], 2 elements */
hsize_t dims[1]={2};
hsize_t dims1r[1]={2};
char buf1[2][2]= {"ab","de"}; /* string */
char buf2[2]= {1,2}; /* bitfield, opaque */
s_t buf3[2]= {{1,2},{3,4}}; /* compound */
hobj_ref_t buf4[2]; /* reference */
e_t buf45[2]= {RED,GREEN}; /* enum */
hvl_t buf5[2]; /* vlen */
hsize_t dimarray[1]={3}; /* array dimension */
int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
int buf7[2]= {1,2}; /* integer */
float buf8[2]= {1,2}; /* float */
/* create 2D attributes with dimension [3][2], 6 elements */
hsize_t dims2[2]={3,2};
hsize_t dims2r[2]={1,1};
char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */
char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
hobj_ref_t buf42[1][1]; /* reference */
hvl_t buf52[3][2]; /* vlen */
int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
/* create 3D attributes with dimension [4][3][2], 24 elements */
hsize_t dims3[3]={4,3,2};
hsize_t dims3r[3]={1,1,1};
char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
"rs","tu","vw","xz","AB","CD","EF","GH",
"IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
char buf23[4][3][2]; /* bitfield, opaque */
s_t buf33[4][3][2]; /* compound */
hobj_ref_t buf43[1][1][1]; /* reference */
hvl_t buf53[4][3][2]; /* vlen */
int buf63[24][3]; /* array */
int buf73[4][3][2]; /* integer */
float buf83[4][3][2]; /* float */
/*-------------------------------------------------------------------------
* 1D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<2; j++)
{
buf1[i][j]='z';
}
}
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (write_dset(loc_id,1,dims,"string",tid,buf1) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/* create hard link */
if (H5Lcreate_hard(loc_id, "string", H5L_SAME_LOC, "string_link", H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
buf2[i]=buf2[1]=0;
}
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (write_dset(loc_id,1,dims,"bitfield",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf3[i].a=0; buf3[i].b=0;
}
}
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (write_dset(loc_id,1,dims,"opaque",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf45[i]=GREEN;
}
}
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (write_dset(loc_id,1,dims,"compound",tid,buf3) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* object references ( H5R_OBJECT ) */
buf4[0]=0;
buf4[1]=0;
if (dset_name)
{
if (H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1) < 0)
goto out;
if (write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4) < 0)
goto out;
}
/* Dataset region reference ( H5R_DATASET_REGION ) */
if (make_dset_reg_ref(loc_id) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (write_dset(loc_id,1,dims,"enum",tid,buf45) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
buf5[0].len = 1;
buf5[0].p = malloc( 1 * sizeof(int));
((int *)buf5[0].p)[0]=1;
buf5[1].len = 2;
buf5[1].p = malloc( 2 * sizeof(int));
((int *)buf5[1].p)[0] = 2;
((int *)buf5[1].p)[1] = 3;
if(make_diffs) {
((int *)buf5[0].p)[0] = 0;
((int *)buf5[1].p)[0] = 0;
((int *)buf5[1].p)[1] = 0;
}
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<3; j++)
{
buf6[i][j]=0;
}
}
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (write_dset(loc_id, 1, dims, "array", tid, buf6) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
{
double *dbuf; /* information to write */
size_t size;
hsize_t sdims[] = {1};
hsize_t tdims[] = {H5TOOLS_MALLOCSIZE / sizeof(double) + 1};
unsigned u;
/* allocate and initialize array data to write */
size = ( H5TOOLS_MALLOCSIZE / sizeof(double) + 1 ) * sizeof(double);
dbuf = (double*)malloc( size );
for( u = 0; u < H5TOOLS_MALLOCSIZE / sizeof(double) + 1; u++)
dbuf[u] = u;
if (make_diffs)
{
dbuf[5] = 0;
dbuf[6] = 0;
}
/* create a type larger than H5TOOLS_MALLOCSIZE */
if ((tid = H5Tarray_create2(H5T_NATIVE_DOUBLE, 1, tdims)) < 0)
goto out;
size = H5Tget_size(tid);
if ((sid = H5Screate_simple(1, sdims, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "arrayd", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
#if defined(WRITE_ARRAY)
H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, dbuf);
#endif
/* close */
H5Dclose(did);
H5Tclose(tid);
H5Sclose(sid);
free( dbuf );
}
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf7[i]=0;
buf8[i]=0;
}
}
if (write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0)
goto out;
if (write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0)
goto out;
/*-------------------------------------------------------------------------
* 2D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf12, 'z', sizeof buf12);
}
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"string2D",tid,buf12) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf22,0,sizeof buf22);
}
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (write_dset(loc_id,2,dims2,"opaque2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf32,0,sizeof buf32);
}
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"compound2D",tid,buf32) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
if (H5Rcreate(&buf42[0][0], file_id, dset_name, H5R_OBJECT, -1) < 0)
goto out;
if (write_dset(loc_id, 2, dims2r, "refobj2D", H5T_STD_REF_OBJ, buf42) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (write_dset(loc_id,2,dims2,"enum2D",tid,0) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n = 0;
for(i = 0; i < 3; i++)
{
for(j = 0; j < 2; j++)
{
int l;
buf52[i][j].p = malloc((i + 1) * sizeof(int));
buf52[i][j].len = i + 1;
for(l = 0; l < i + 1; l++)
{
if(make_diffs)
((int *)buf52[i][j].p)[l] = 0;
else
((int *)buf52[i][j].p)[l] = n++;
}
}
}
if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf52) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf62,0,sizeof buf62);
}
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (write_dset(loc_id, 2, dims2, "array2D", tid, buf62) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_INTEGER, write a fill value
*-------------------------------------------------------------------------
*/
if(make_diffs) {
memset(buf72, 0, sizeof buf72);
memset(buf82, 0, sizeof buf82);
}
if ((pid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
goto out;
if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "integer2D", H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf72) < 0)
goto out;
if (H5Pclose(pid) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_FLOAT
*-------------------------------------------------------------------------
*/
if (write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0)
goto out;
/*-------------------------------------------------------------------------
* 3D
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf13,'z',sizeof buf13);
}
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"string3D",tid,buf13) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) buf23[i][j][k]=0;
else buf23[i][j][k]=n++;
}
}
}
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (write_dset(loc_id,3,dims3,"opaque3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) {
buf33[i][j][k].a=0;
buf33[i][j][k].b=0;
}
else {
buf33[i][j][k].a=n++;
buf33[i][j][k].b=n++;
}
}
}
}
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"compound3D",tid,buf33) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
if (H5Rcreate(&buf43[0][0][0], file_id, dset_name, H5R_OBJECT, -1) < 0)
goto out;
if (write_dset(loc_id, 3, dims3r, "refobj3D", H5T_STD_REF_OBJ, buf43) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"enum3D",tid,0) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n = 0;
for(i = 0; i < 4; i++)
{
for(j = 0; j < 3; j++)
{
for(k = 0; k < 2; k++)
{
int l;
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
buf53[i][j][k].len = i + 1;
for(l = 0; l < i + 1; l++)
{
if(make_diffs)
((int *)buf53[i][j][k].p)[l] = 0;
else
((int *)buf53[i][j][k].p)[l] = n++;
}
}
}
}
if ((sid = H5Screate_simple(3, dims3, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf53) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0)
goto out;
if (H5Dclose(did) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
n = 1;
for(i = 0; i < 24; i++)
{
for(j = 0; j < (int)dimarray[0]; j++)
{
if(make_diffs)
buf63[i][j] = 0;
else
buf63[i][j] = n++;
}
}
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (write_dset(loc_id, 3, dims3, "array3D", tid, buf63) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
n=1; f=1;
for (i = 0; i < 4; i++) {
for (j = 0; j < 3; j++) {
for (k = 0; k < 2; k++) {
if (make_diffs) {
buf73[i][j][k]=0;
buf83[i][j][k]=0;
}
else {
buf73[i][j][k]=n++;
buf83[i][j][k]=f++;
}
}
}
}
if (write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0)
goto out;
if (write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Pclose(pid);
H5Sclose(sid);
H5Dclose(did);
H5Tclose(tid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_dset_reg_ref
*
* Purpose: write dataset region references
*
*-------------------------------------------------------------------------
*/
#define SPACE1_RANK 1
#define SPACE1_DIM1 1
#define SPACE2_RANK 2
#define SPACE2_DIM1 10
#define SPACE2_DIM2 10
static
int make_dset_reg_ref(hid_t loc_id)
{
hid_t did1=-1; /* Dataset ID */
hid_t did2=-1; /* Dereferenced dataset ID */
hid_t sid1=-1; /* Dataspace ID #1 */
hid_t sid2=-1; /* Dataspace ID #2 */
hsize_t dims1[] = {SPACE1_DIM1};
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
hdset_reg_ref_t *wbuf=NULL; /* buffer to write to disk */
int *dwbuf=NULL; /* Buffer for writing numeric data to disk */
int i; /* counting variables */
int retval = -1; /* return value */
/* Allocate write & read buffers */
wbuf = (hdset_reg_ref_t *)calloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
dwbuf = (int *)malloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2);
/* Create dataspace for datasets */
if ((sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL)) < 0)
goto out;
/* Create a dataset */
if ((did2 = H5Dcreate2(loc_id, "dsetreg", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
for (i = 0; i < SPACE2_DIM1 * SPACE2_DIM2; i++)
dwbuf[i] = i * 3;
/* Write selection to disk */
if (H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf) < 0)
goto out;
/* Create dataspace for the reference dataset */
if ((sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL)) < 0)
goto out;
/* Create a dataset */
if ((did1 = H5Dcreate2(loc_id, "refreg", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
/* Select 6x6 hyperslab for first reference */
start[0] = 2; start[1] = 2;
stride[0] = 1; stride[1] = 1;
count[0] = 6; count[1] = 6;
block[0] = 1; block[1] = 1;
if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block) < 0)
goto out;
/* Store dataset region */
if (H5Rcreate(&wbuf[0], loc_id, "dsetreg", H5R_DATASET_REGION, sid2) < 0)
goto out;
/* Write selection to disk */
if (H5Dwrite(did1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf) < 0)
goto out;
/* Close all objects */
if (H5Sclose(sid1) < 0)
goto out;
if (H5Dclose(did1) < 0)
goto out;
if (H5Sclose(sid2) < 0)
goto out;
if (H5Dclose(did2) < 0)
goto out;
retval = 0;
out:
if(wbuf)
free(wbuf);
if(dwbuf)
free(dwbuf);
H5E_BEGIN_TRY
{
H5Sclose(sid1);
H5Sclose(sid2);
H5Dclose(did1);
H5Dclose(did2);
} H5E_END_TRY;
return retval;
}
/*-------------------------------------------------------------------------
* Function: write_attr_in
*
* Purpose: write attributes in LOC_ID (dataset, group, named datatype)
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int write_attr_in(hid_t loc_id,
const char* dset_name, /* for saving reference to dataset*/
hid_t fid, /* for reference create */
int make_diffs /* flag to modify data buffers */)
{
/* Compound datatype */
typedef struct s_t
{
char a;
double b;
} s_t;
typedef enum
{
RED,
GREEN
} e_t;
hid_t aid = -1;
hid_t sid = -1;
hid_t tid = -1;
int val, i, j, k, n;
float f;
/* create 1D attributes with dimension [2], 2 elements */
hsize_t dims[1]={2};
char buf1[2][2]= {"ab","de"}; /* string */
char buf2[2]= {1,2}; /* bitfield, opaque */
s_t buf3[2]= {{1,2},{3,4}}; /* compound */
hobj_ref_t buf4[2]; /* reference */
e_t buf45[2]= {RED,RED}; /* enum */
hvl_t buf5[2]; /* vlen */
hsize_t dimarray[1]={3}; /* array dimension */
int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
int buf7[2]= {1,2}; /* integer */
float buf8[2]= {1,2}; /* float */
/* create 2D attributes with dimension [3][2], 6 elements */
hsize_t dims2[2]={3,2};
char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */
char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
hobj_ref_t buf42[3][2]; /* reference */
e_t buf452[3][2]; /* enum */
hvl_t buf52[3][2]; /* vlen */
int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
/* create 3D attributes with dimension [4][3][2], 24 elements */
hsize_t dims3[3]={4,3,2};
char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
"rs","tu","vw","xz","AB","CD","EF","GH",
"IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
char buf23[4][3][2]; /* bitfield, opaque */
s_t buf33[4][3][2]; /* compound */
hobj_ref_t buf43[4][3][2]; /* reference */
e_t buf453[4][3][2]; /* enum */
hvl_t buf53[4][3][2]; /* vlen */
int buf63[24][3]; /* array */
int buf73[4][3][2]; /* integer */
float buf83[4][3][2]; /* float */
/*-------------------------------------------------------------------------
* 1D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<2; j++)
{
buf1[i][j]='z';
}
}
/*
buf1[2][2]= {"ab","de"};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <string> and <string>
position string of </g1> string of </g1> difference
------------------------------------------------------------
[ 0 ] a z
[ 0 ] b z
[ 1 ] d z
[ 1 ] e z
*/
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (make_attr(loc_id,1,dims,"string",tid,buf1) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
buf2[i]=buf2[1]=0;
}
/*
buf2[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <bitfield> and <bitfield>
position bitfield of </g1> bitfield of </g1> difference
position opaque of </g1> opaque of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (make_attr(loc_id,1,dims,"bitfield",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
/*
buf2[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <opaque> and <opaque>
position opaque of </g1> opaque of </g1> difference
position opaque of </g1> opaque of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (make_attr(loc_id,1,dims,"opaque",tid,buf2) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf3[i].a=0; buf3[i].b=0;
}
}
/*
buf3[2]= {{1,2},{3,4}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <compound> and <compound>
position compound of </g1> compound of </g1> difference
------------------------------------------------------------
[ 0 ] 1 5 4
[ 0 ] 2 5 3
[ 1 ] 3 5 2
[ 1 ] 4 5 1
*/
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (make_attr(loc_id,1,dims,"compound",tid,buf3) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* object references ( H5R_OBJECT */
if (dset_name)
{
if (H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
if (H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
if (make_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
{
buf45[i]=GREEN;
}
}
/*
buf45[2]= {RED,RED};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <enum> and <enum>
position enum of </g1> enum of </g1> difference
------------------------------------------------------------
[ 0 ] RED GREEN
[ 1 ] RED GREEN
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (make_attr(loc_id,1,dims,"enum",tid,buf45) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
buf5[0].len = 1;
buf5[0].p = malloc( 1 * sizeof(int));
((int *)buf5[0].p)[0]=1;
buf5[1].len = 2;
buf5[1].p = malloc(2 * sizeof(int));
((int *)buf5[1].p)[0] = 2;
((int *)buf5[1].p)[1] = 3;
if(make_diffs)
{
((int *)buf5[0].p)[0] = 0;
((int *)buf5[1].p)[0] = 0;
((int *)buf5[1].p)[1] = 0;
}
/*
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
position vlen of </g1> vlen of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
[ 1 ] 3 0 3
*/
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Awrite(aid, tid, buf5) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0)
goto out;
if (H5Aclose(aid) < 0)
goto out;
aid = -1;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
if (H5Sclose(sid) < 0)
goto out;
sid = -1;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
for (i=0; i<2; i++)
for (j=0; j<3; j++)
{
buf6[i][j]=0;
}
}
/*
buf6[2][3]= {{1,2,3},{4,5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <array> and <array>
position array of </g1> array of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 0 ] 2 0 2
[ 0 ] 3 0 3
[ 1 ] 4 0 4
[ 1 ] 5 0 5
[ 1 ] 6 0 6
*/
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (make_attr(loc_id, 1, dims, "array", tid, buf6) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if(make_diffs)
{
for(i = 0; i < 2; i++)
{
buf7[i]=0;
buf8[i]=0;
}
}
/*
buf7[2]= {1,2};
buf8[2]= {1,2};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
position integer of </g1> integer of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
position float of </g1> float of </g1> difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
*/
if (make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0)
goto out;
if (make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0)
goto out;
/*-------------------------------------------------------------------------
* 2D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf12, 'z', sizeof buf12);
}
/*
buf12[6][2]= {"ab","cd","ef","gh","ij","kl"};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <string2D> and <string2D>
position string2D of </g1> string2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] a z
[ 0 0 ] b z
[ 0 1 ] c z
[ 0 1 ] d z
[ 1 0 ] e z
[ 1 0 ] f z
[ 1 1 ] g z
[ 1 1 ] h z
[ 2 0 ] i z
[ 2 0 ] j z
[ 2 1 ] k z
[ 2 1 ] l z
*/
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"string2D",tid,buf12) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf22,0,sizeof buf22);
}
/*
buf22[3][2]= {{1,2},{3,4},{5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <bitfield2D> and <bitfield2D>
position bitfield2D of </g1> bitfield2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
/*
buf22[3][2]= {{1,2},{3,4},{5,6}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <opaque2D> and <opaque2D>
position opaque2D of </g1> opaque2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (make_attr(loc_id,2,dims2,"opaque2D",tid,buf22) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf32,0,sizeof buf32);
}
/*
buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Attribute: <opaque2D> and <opaque2D>
position opaque2D of </g1> opaque2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"compound2D",tid,buf32) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 3; i++)
{
for (j = 0; j < 2; j++)
{
if (H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
}
}
if (make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
for (i=0; i<3; i++)
{
for (j=0; j<2; j++)
{
if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
}
}
/*
Attribute: <enum2D> and <enum2D>
position enum2D of </g1> enum2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] RED GREEN
[ 0 1 ] RED GREEN
[ 1 0 ] RED GREEN
[ 1 1 ] RED GREEN
[ 2 0 ] RED GREEN
[ 2 1 ] RED GREEN
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"enum2D",tid,buf452) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n=0;
for (i = 0; i < 3; i++)
{
for (j = 0; j < 2; j++)
{
int l;
buf52[i][j].p = malloc((i + 1) * sizeof(int));
buf52[i][j].len = i + 1;
for (l = 0; l < i + 1; l++)
if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
else ((int *)buf52[i][j].p)[l] = n++;
}
}
/*
position vlen2D of </g1> vlen2D of </g1> difference
------------------------------------------------------------
[ 0 1 ] 1 0 1
[ 1 0 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 1 1 ] 5 0 5
[ 2 0 ] 6 0 6
[ 2 0 ] 7 0 7
[ 2 0 ] 8 0 8
[ 2 1 ] 9 0 9
[ 2 1 ] 10 0 10
[ 2 1 ] 11 0 11
*/
if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Awrite(aid, tid, buf52) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0)
goto out;
if (H5Aclose(aid) < 0)
goto out;
aid = -1;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
if (H5Sclose(sid) < 0)
goto out;
sid = -1;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf62,0,sizeof buf62);
}
/*
buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}};
$h5diff file7.h5 file6.h5 g1 g1 -v
Group: </g1> and </g1>
Attribute: <array2D> and <array2D>
position array2D of </g1> array2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 0 ] 2 0 2
[ 0 0 ] 3 0 3
[ 0 1 ] 4 0 4
[ 0 1 ] 5 0 5
[ 0 1 ] 6 0 6
[ 1 0 ] 7 0 7
[ 1 0 ] 8 0 8
[ 1 0 ] 9 0 9
[ 1 1 ] 10 0 10
[ 1 1 ] 11 0 11
[ 1 1 ] 12 0 12
[ 2 0 ] 13 0 13
[ 2 0 ] 14 0 14
[ 2 0 ] 15 0 15
[ 2 1 ] 16 0 16
[ 2 1 ] 17 0 17
[ 2 1 ] 18 0 18
*/
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (make_attr(loc_id, 2, dims2, "array2D", tid, buf62) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
if(make_diffs)
{
HDmemset(buf72, 0, sizeof buf72);
HDmemset(buf82, 0, sizeof buf82);
}
/*
Attribute: <integer2D> and <integer2D>
position integer2D of </g1> integer2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
6 differences found
Attribute: <float2D> and <float2D>
position float2D of </g1> float2D of </g1> difference
------------------------------------------------------------
[ 0 0 ] 1 0 1
[ 0 1 ] 2 0 2
[ 1 0 ] 3 0 3
[ 1 1 ] 4 0 4
[ 2 0 ] 5 0 5
[ 2 1 ] 6 0 6
*/
if (make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72) < 0)
goto out;
if (make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0)
goto out;
/*-------------------------------------------------------------------------
* 3D attributes
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
if (make_diffs)
{
memset(buf13,'z',sizeof buf13);
}
/*
buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
"rs","tu","vw","xz","AB","CD","EF","GH",
"IJ","KL","MN","PQ","RS","TU","VW","XZ"};
Attribute: <string3D> and <string3D>
position string3D of </g1> string3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] a z
[ 0 0 0 ] b z
[ 0 0 1 ] c z
[ 0 0 1 ] d z
[ 0 1 0 ] e z
[ 0 1 0 ] f z
[ 0 1 1 ] g z
[ 0 1 1 ] h z
[ 0 2 0 ] i z
[ 0 2 0 ] j z
[ 0 2 1 ] k z
[ 0 2 1 ] l z
[ 1 0 0 ] m z
[ 1 0 0 ] n z
[ 1 0 1 ] p z
[ 1 0 1 ] q z
[ 1 1 0 ] r z
[ 1 1 0 ] s z
[ 1 1 1 ] t z
[ 1 1 1 ] u z
[ 1 2 0 ] v z
[ 1 2 0 ] w z
[ 1 2 1 ] x z
[ 2 0 0 ] A z
[ 2 0 0 ] B z
[ 2 0 1 ] C z
[ 2 0 1 ] D z
[ 2 1 0 ] E z
[ 2 1 0 ] F z
[ 2 1 1 ] G z
[ 2 1 1 ] H z
[ 2 2 0 ] I z
[ 2 2 0 ] J z
[ 2 2 1 ] K z
[ 2 2 1 ] L z
[ 3 0 0 ] M z
[ 3 0 0 ] N z
[ 3 0 1 ] P z
[ 3 0 1 ] Q z
[ 3 1 0 ] R z
[ 3 1 0 ] S z
[ 3 1 1 ] T z
[ 3 1 1 ] U z
[ 3 2 0 ] V z
[ 3 2 0 ] W z
[ 3 2 1 ] X z
[ 3 2 1 ] Z z
*/
if ((tid = H5Tcopy(H5T_C_S1)) < 0)
goto out;
if (H5Tset_size(tid, (size_t)2) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"string3D",tid,buf13) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs) buf23[i][j][k]=0;
else buf23[i][j][k]=n++;
}
}
}
/*
position bitfield3D of </g1> bitfield3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 1 ] 2 0 2
[ 0 1 0 ] 3 0 3
[ 0 1 1 ] 4 0 4
[ 0 2 0 ] 5 0 5
[ 0 2 1 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 1 0 ] 9 0 9
[ 1 1 1 ] 10 0 10
[ 1 2 0 ] 11 0 11
[ 1 2 1 ] 12 0 12
[ 2 0 0 ] 13 0 13
[ 2 0 1 ] 14 0 14
[ 2 1 0 ] 15 0 15
[ 2 1 1 ] 16 0 16
[ 2 2 0 ] 17 0 17
[ 2 2 1 ] 18 0 18
[ 3 0 0 ] 19 0 19
[ 3 0 1 ] 20 0 20
[ 3 1 0 ] 21 0 21
[ 3 1 1 ] 22 0 22
[ 3 2 0 ] 23 0 23
[ 3 2 1 ] 24 0 24
*/
if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
goto out;
if (H5Tset_tag(tid, "1-byte opaque type") < 0)
goto out;
if (make_attr(loc_id,3,dims3,"opaque3D",tid,buf23) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs)
{
buf33[i][j][k].a=0;
buf33[i][j][k].b=0;
}
else
{
buf33[i][j][k].a=n++;
buf33[i][j][k].b=n++;
}
}
}
}
/*position compound3D of </g1> compound3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 0 ] 2 0 2
[ 0 0 1 ] 3 0 3
[ 0 0 1 ] 4 0 4
[ 0 1 0 ] 5 0 5
[ 0 1 0 ] 6 0 6
[ 0 1 1 ] 7 0 7
[ 0 1 1 ] 8 0 8
[ 0 2 0 ] 9 0 9
[ 0 2 0 ] 10 0 10
[ 0 2 1 ] 11 0 11
[ 0 2 1 ] 12 0 12
[ 1 0 0 ] 13 0 13
[ 1 0 0 ] 14 0 14
[ 1 0 1 ] 15 0 15
[ 1 0 1 ] 16 0 16
[ 1 1 0 ] 17 0 17
[ 1 1 0 ] 18 0 18
[ 1 1 1 ] 19 0 19
[ 1 1 1 ] 20 0 20
[ 1 2 0 ] 21 0 21
[ 1 2 0 ] 22 0 22
[ 1 2 1 ] 23 0 23
[ 1 2 1 ] 24 0 24
[ 2 0 0 ] 25 0 25
[ 2 0 0 ] 26 0 26
[ 2 0 1 ] 27 0 27
[ 2 0 1 ] 28 0 28
[ 2 1 0 ] 29 0 29
[ 2 1 0 ] 30 0 30
[ 2 1 1 ] 31 0 31
[ 2 1 1 ] 32 0 32
[ 2 2 0 ] 33 0 33
[ 2 2 0 ] 34 0 34
[ 2 2 1 ] 35 0 35
[ 2 2 1 ] 36 0 36
[ 3 0 0 ] 37 0 37
[ 3 0 0 ] 38 0 38
[ 3 0 1 ] 39 0 39
[ 3 0 1 ] 40 0 40
[ 3 1 0 ] 41 0 41
[ 3 1 0 ] 42 0 42
[ 3 1 1 ] 43 0 43
[ 3 1 1 ] 44 0 44
[ 3 2 0 ] 45 0 45
[ 3 2 0 ] 46 0 46
[ 3 2 1 ] 47 0 47
[ 3 2 1 ] 48 0 48
*/
if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
goto out;
if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
goto out;
if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"compound3D",tid,buf33) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
/* Create references to dataset */
if (dset_name)
{
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
if (H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1) < 0)
goto out;
}
}
if (make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43) < 0)
goto out;
}
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
if (make_diffs)
{
buf453[i][j][k]=RED;
}
else
{
buf453[i][j][k]=GREEN;
}
}
}
}
/*
position enum3D of </g1> enum3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] GREEN RED
[ 0 0 1 ] GREEN RED
[ 0 1 0 ] GREEN RED
[ 0 1 1 ] GREEN RED
[ 0 2 0 ] GREEN RED
[ 0 2 1 ] GREEN RED
[ 1 0 0 ] GREEN RED
[ 1 0 1 ] GREEN RED
[ 1 1 0 ] GREEN RED
[ 1 1 1 ] GREEN RED
[ 1 2 0 ] GREEN RED
[ 1 2 1 ] GREEN RED
[ 2 0 0 ] GREEN RED
[ 2 0 1 ] GREEN RED
[ 2 1 0 ] GREEN RED
[ 2 1 1 ] GREEN RED
[ 2 2 0 ] GREEN RED
[ 2 2 1 ] GREEN RED
[ 3 0 0 ] GREEN RED
[ 3 0 1 ] GREEN RED
[ 3 1 0 ] GREEN RED
[ 3 1 1 ] GREEN RED
[ 3 2 0 ] GREEN RED
[ 3 2 1 ] GREEN RED
*/
if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
goto out;
if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
goto out;
if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"enum3D",tid,buf453) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
/* Allocate and initialize VL dataset to write */
n=0;
for (i = 0; i < 4; i++)
{
for (j = 0; j < 3; j++)
{
for (k = 0; k < 2; k++)
{
int l;
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
buf53[i][j][k].len = i + 1;
for (l = 0; l < i + 1; l++)
if (make_diffs)
{
((int *)buf53[i][j][k].p)[l] = 0;
}
else
((int *)buf53[i][j][k].p)[l] = n++;
}
}
}
/*
position vlen3D of </g1> vlen3D of </g1> difference
------------------------------------------------------------
[ 0 0 1 ] 1 0 1
[ 0 1 0 ] 2 0 2
[ 0 1 1 ] 3 0 3
[ 0 2 0 ] 4 0 4
[ 0 2 1 ] 5 0 5
[ 1 0 0 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 0 1 ] 9 0 9
[ 1 1 0 ] 10 0 10
etc
*/
if ((sid = H5Screate_simple(3, dims3, NULL)) < 0)
goto out;
if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
goto out;
if ((aid = H5Acreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (H5Awrite(aid, tid, buf53) < 0)
goto out;
if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0)
goto out;
if (H5Aclose(aid) < 0)
goto out;
aid = -1;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
if (H5Sclose(sid) < 0)
goto out;
sid = -1;
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
n=1;
for (i = 0; i < 24; i++)
{
for (j = 0; j < (int)dimarray[0]; j++)
{
if (make_diffs) buf63[i][j]=0;
else buf63[i][j]=n++;
}
}
/*
position array3D of </g1> array3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 0 ] 2 0 2
[ 0 0 0 ] 3 0 3
[ 0 0 1 ] 4 0 4
[ 0 0 1 ] 5 0 5
[ 0 0 1 ] 6 0 6
[ 0 1 0 ] 7 0 7
etc
*/
if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
goto out;
if (make_attr(loc_id, 3, dims3, "array3D", tid, buf63) < 0)
goto out;
if (H5Tclose(tid) < 0)
goto out;
tid = -1;
/*-------------------------------------------------------------------------
* H5T_INTEGER and H5T_FLOAT
*-------------------------------------------------------------------------
*/
n = 1; f = 1;
for(i = 0; i < 4; i++)
{
for(j = 0; j < 3; j++)
{
for(k = 0; k < 2; k++)
{
if(make_diffs)
{
buf73[i][j][k] = 0;
buf83[i][j][k] = 0;
}
else
{
buf73[i][j][k] = n++;
buf83[i][j][k] = f++;
}
}
}
}
/*
position integer3D of </g1> integer3D of </g1> difference
------------------------------------------------------------
[ 0 0 0 ] 1 0 1
[ 0 0 1 ] 2 0 2
[ 0 1 0 ] 3 0 3
[ 0 1 1 ] 4 0 4
[ 0 2 0 ] 5 0 5
[ 0 2 1 ] 6 0 6
[ 1 0 0 ] 7 0 7
[ 1 0 1 ] 8 0 8
[ 1 1 0 ] 9 0 9
[ 1 1 1 ] 10 0 10
etc
*/
if (make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0)
goto out;
if (make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Aclose(aid);
H5Sclose(sid);
H5Tclose(tid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_dset
*
* Purpose: utility function to create and write a dataset in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int make_dset(hid_t loc_id,
const char *name,
hid_t sid,
hid_t dcpl,
void *buf)
{
hid_t did=-1;
if ((did = H5Dcreate2(loc_id, name, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
return -1;
if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
if (H5Dclose(did) < 0)
return -1;
return 0;
out:
H5E_BEGIN_TRY {
H5Dclose(did);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: write_dset
*
* Purpose: utility function to create and write a dataset in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int write_dset( hid_t loc_id,
int rank,
hsize_t *dims,
const char *dset_name,
hid_t tid,
void *buf )
{
hid_t did=-1;
hid_t sid=-1;
if ((sid = H5Screate_simple(rank, dims, NULL)) < 0)
return -1;
if ((did = H5Dcreate2(loc_id, dset_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if (buf)
{
if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
goto out;
}
if (H5Dclose(did) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Dclose(did);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_attr
*
* Purpose: utility function to write an attribute in LOC_ID
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: November 12, 2003
*
*-------------------------------------------------------------------------
*/
static
int make_attr(hid_t loc_id,
int rank,
hsize_t *dims,
const char *attr_name,
hid_t tid,
void *buf)
{
hid_t aid;
hid_t sid;
if ((sid = H5Screate_simple(rank, dims, NULL)) < 0)
return -1;
if ((aid = H5Acreate2(loc_id, attr_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(buf)
{
if(H5Awrite(aid, tid, buf) < 0)
goto out;
}
if (H5Aclose(aid) < 0)
goto out;
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY {
H5Aclose(aid);
H5Sclose(sid);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: make_named_dtype
*
* Purpose: create a file with named datatypes in various configurations
*
*-------------------------------------------------------------------------
*/
static
int make_named_dtype(hid_t loc_id)
{
hsize_t dims[1] ={3};
hid_t did=-1;
hid_t aid=-1;
hid_t sid=-1;
hid_t tid=-1;
hid_t gid=-1;
if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
/* Create a dataset with an anonymous committed datatype as the first thing
* h5repack sees */
if((tid = H5Tcopy(H5T_STD_I16LE)) < 0)
goto out;
if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if ((did = H5Dcreate2(loc_id, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
/* Create an attribute on that dataset that uses a committed datatype in
* a remote group */
if((gid = H5Gcreate2(loc_id, "M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Gclose(gid) < 0)
goto out;
if((gid = H5Gcreate2(loc_id, "M/M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Gclose(gid) < 0)
goto out;
if((tid = H5Tcopy(H5T_STD_I16BE)) < 0)
goto out;
if(H5Tcommit2(loc_id, "/M/M/A", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
/* Create a dataset in the remote group that uses a committed datatype in
* the root group */
if((tid = H5Tcopy(H5T_STD_I32LE)) < 0)
goto out;
if(H5Tcommit2(loc_id, "N", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "M/M/B", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
/* Create an attribute on the remote dataset that uses an anonymous
* committed datatype */
if((tid = H5Tcopy(H5T_STD_I32BE)) < 0)
goto out;
if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0)
goto out;
if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
/* Create another attribute that uses the same anonymous datatype */
if((aid = H5Acreate2(did, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
/* Create a dataset in the root group that uses the committed datatype in
* the root group */
if((tid = H5Topen2(loc_id, "N", H5P_DEFAULT)) < 0)
goto out;
if((did = H5Dcreate2(loc_id, "O", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Dclose(did) < 0)
goto out;
/* Create 2 attributes on the committed datatype that use that datatype */
if((aid = H5Acreate2(tid, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if((aid = H5Acreate2(tid, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
if(H5Aclose(aid) < 0)
goto out;
if(H5Tclose(tid) < 0)
goto out;
/* Close */
if (H5Sclose(sid) < 0)
goto out;
return 0;
out:
H5E_BEGIN_TRY
{
H5Tclose(tid);
H5Aclose(aid);
H5Sclose(sid);
H5Dclose(did);
H5Gclose(gid);
} H5E_END_TRY;
return -1;
} /* end make_named_dtype() */
/*-------------------------------------------------------------------------
* Function: add_attr_with_objref
*
* Purpose:
* Create attributes with object reference to objects (dset,
* group, datatype).
*
* Note:
* this function depends on locally created objects, however can be modified
* to be independent as necessary
*
* Programmer: Jonathan Kim (March 23, 2010)
*------------------------------------------------------------------------*/
static herr_t add_attr_with_objref(hid_t file_id, hid_t obj_id)
{
int ret = SUCCEED;
int status;
/* attr obj ref */
hsize_t dim_attr_objref[1]={3};
hobj_ref_t data_attr_objref[3];
/* --------------------------------
* add attribute with obj ref type
*/
/* ref to dset */
status = H5Rcreate(&data_attr_objref[0],file_id,NAME_OBJ_DS1,H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* ref to group */
status = H5Rcreate(&data_attr_objref[1],file_id,NAME_OBJ_GRP,H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* ref to datatype */
status = H5Rcreate(&data_attr_objref[2],file_id,NAME_OBJ_NDTYPE,H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create attr with obj ref type */
status = make_attr(obj_id,1,dim_attr_objref,"Attr_OBJREF",H5T_STD_REF_OBJ,data_attr_objref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
return ret;
}
/*-------------------------------------------------------------------------
* Function: add_attr_with_regref
*
* Purpose:
* Create attributes with region reference to dset
*
* Note:
* this function depends on locally created objects, however can be modified
* to be independent as necessary
*
* Programmer: Jonathan Kim (March 23, 2010)
*------------------------------------------------------------------------*/
static herr_t add_attr_with_regref(hid_t file_id, hid_t obj_id)
{
int ret = SUCCEED;
int status;
/* attr region ref */
hid_t sid_regrefed_dset=0;
hsize_t dim_regrefed_dset[2]={3,6};
hsize_t coords_regrefed_dset[3][2] = {{0,1},{1,2},{2,3}};
hsize_t dim_attr_regref[1]= {1}; /* dim of */
hdset_reg_ref_t data_attr_regref[1];
/* -----------------------------------
* add attribute with region ref type
*/
sid_regrefed_dset = H5Screate_simple (2, dim_regrefed_dset, NULL);
if (sid_regrefed_dset < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* select elements space for reference */
status = H5Sselect_elements (sid_regrefed_dset, H5S_SELECT_SET, 3, coords_regrefed_dset[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference from elements space */
status = H5Rcreate (&data_attr_regref[0], file_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_regrefed_dset);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create attr with region ref type */
status = make_attr(obj_id,1,dim_attr_regref,"Attr_REGREF",H5T_STD_REF_DSETREG,data_attr_regref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if (sid_regrefed_dset > 0)
H5Sclose (sid_regrefed_dset);
return ret;
}
/*-------------------------------------------------------------------------
* Function: gen_refered_objs
*
* Purpose:
* Create objects (dataset, group, datatype) to be referenced
*
* Note:
* This function is to use along with gen_obj_ref() gen_region_ref()
*
* Programmer: Jonathan Kim (March 23, 2010)
*------------------------------------------------------------------------*/
static herr_t gen_refered_objs(hid_t loc_id)
{
int status;
herr_t ret = SUCCEED;
/* objects (dset, group, datatype) */
hid_t sid=0, did1=0, gid=0, tid=0;
hsize_t dims1[1]={3};
int data[3] = {10,20,30};
/* Dset2 */
hid_t sid2=0, did2=0;
hsize_t dims2[2] = {3,16};
char data2[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"};
/*-----------------------
* add short dataset
* (define NAME_OBJ_DS1)
*/
sid = H5Screate_simple(1, dims1, NULL);
if (sid < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
did1 = H5Dcreate2 (loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (did1 < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*--------------
* add group
* (define NAME_OBJ_GRP)
*/
gid = H5Gcreate2 (loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (gid < 0)
{
fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*----------------------
* add named datatype
* (define NAME_OBJ_NDTYPE)
*/
tid = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*--------------------------
* create long dataset
* (define NAME_OBJ_DS2)
*/
sid2 = H5Screate_simple (2, dims2, NULL);
if (sid2 < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create normal dataset which is refered */
did2 = H5Dcreate2 (loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
if (did2 < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* write values to dataset */
status = H5Dwrite (did2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if(did1 > 0)
H5Dclose(did1);
if(gid > 0)
H5Gclose(gid);
if(tid > 0)
H5Tclose(tid);
if(sid > 0)
H5Sclose(sid);
if(did2 > 0)
H5Dclose(did2);
if(sid2 > 0)
H5Sclose(sid2);
return ret;
}
/*-------------------------------------------------------------------------
* Function: gen_obj_ref
*
* Purpose:
* Generate object references to objects (dataset,group and named datatype)
*
* Note:
* copied from h5copygentest.c and upate to create named datatype
*
* Programmer: Jonathan Kim (March 18, 2010)
*------------------------------------------------------------------------*/
static herr_t gen_obj_ref(hid_t loc_id)
{
int status;
herr_t ret = SUCCEED;
hid_t sid=0, oid=0;
hsize_t dims_dset_objref[1]={3};
/* attr with int type */
hsize_t dim_attr_int[1]={2};
int data_attr_int[2] = {10,20};
/* write buffer for obj reference */
hobj_ref_t objref_buf[3];
/*---------------------------------------------------------
* create obj references to the previously created objects.
* Passing -1 as reference is an object.*/
/* obj ref to dataset */
status = H5Rcreate (&objref_buf[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* obj ref to group */
status = H5Rcreate (&objref_buf[1], loc_id, NAME_OBJ_GRP, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* obj ref to named-datatype */
status = H5Rcreate (&objref_buf[2], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*---------------------------------------------------------
* create dataset contain references
*/
sid = H5Screate_simple (1, dims_dset_objref, NULL);
if (sid < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
if (oid < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, objref_buf);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with int type */
if (make_attr(oid,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0)
goto out;
/* add attribute with obj ref */
status = add_attr_with_objref(loc_id, oid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with region ref */
status = add_attr_with_regref(loc_id, oid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if(oid > 0)
H5Dclose(oid);
if(sid > 0)
H5Sclose(sid);
return ret;
}
/*-------------------------------------------------------------------------
* Function: gen_region_ref
*
* Purpose: Generate dataset region references
*
* Note:
* copied from h5copygentest.c
*
* Programmer: Jonathan Kim (March 18, 2010)
*------------------------------------------------------------------------*/
static herr_t gen_region_ref(hid_t loc_id)
{
int status;
herr_t ret = SUCCEED;
/* target dataset */
hid_t sid_trg=0;
hsize_t dims_trg[2] = {3,16};
/* dset with region ref type */
hid_t sid_ref=0, oid_ref=0;
/* region ref to target dataset */
hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} };
hdset_reg_ref_t rr_data[2];
hsize_t start[2] = {0,0};
hsize_t stride[2] = {2,11};
hsize_t count[2] = {2,2};
hsize_t block[2] = {1,3};
hsize_t dims1[1] = {2};
/* attr with int type */
hsize_t dim_attr_int[1]={2};
int data_attr_int[2] = {10,20};
sid_trg = H5Screate_simple (2, dims_trg, NULL);
if (sid_trg < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* select elements space for reference */
status = H5Sselect_elements (sid_trg, H5S_SELECT_SET, 4, coords[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference from elements space */
status = H5Rcreate (&rr_data[0], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* select hyperslab space for reference */
status = H5Sselect_hyperslab (sid_trg, H5S_SELECT_SET, start, stride, count, block);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference from hyperslab space */
status = H5Rcreate (&rr_data[1], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* Create dataspace. */
sid_ref = H5Screate_simple (1, dims1, NULL);
if (sid_ref < 0)
{
fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* create region reference dataset */
oid_ref = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid_ref, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
if (oid_ref < 0)
{
fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* write data as region references */
status = H5Dwrite (oid_ref, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with int type */
if (make_attr(oid_ref,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0)
goto out;
/* add attribute with obj ref */
status = add_attr_with_objref(loc_id, oid_ref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* add attribute with region ref */
status = add_attr_with_regref(loc_id, oid_ref);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
if (oid_ref > 0)
H5Dclose (oid_ref);
if (sid_ref > 0)
H5Sclose (sid_ref);
if (sid_trg > 0)
H5Sclose (sid_trg);
return ret;
}
/*-------------------------------------------------------------------------
* Function: make_references
*
* Purpose: create a file with obj and region references
*
* Programmer: Jonathan Kim (March 18, 2010)
*-------------------------------------------------------------------------
*/
static herr_t make_references(hid_t loc_id)
{
herr_t ret = SUCCEED;
herr_t status;
/* add target objects */
status = gen_refered_objs(loc_id);
if (status == FAIL)
{
fprintf(stderr, "Failed to generate referenced object.\n");
ret = FAIL;
}
/* add object reference */
status = gen_obj_ref(loc_id);
if (status == FAIL)
{
fprintf(stderr, "Failed to generate object reference.\n");
ret = FAIL;
}
/* add region reference */
status = gen_region_ref(loc_id);
if (status == FAIL)
{
fprintf(stderr, "Failed to generate region reference.\n");
ret = FAIL;
}
return ret;
}
/*-------------------------------------------------------------------------
* Function: make_complex_attr_references
*
* Purpose:
* create a file with :
* 1. obj ref in attribute of compound type
* 2. region ref in attribute of compound type
* 3. obj ref in attribute of vlen type
* 4. region ref in attribute of vlen type
*
* Programmer: Jonathan (March 25, 2010)
*-------------------------------------------------------------------------
*/
/* obj dset */
#define RANK_OBJ 2
#define DIM0_OBJ 6
#define DIM1_OBJ 10
/* container dset */
#define RANK_DSET 1
#define DIM_DSET 4
/* 1. obj references in compound attr */
#define RANK_COMP_OBJREF 1
#define DIM_COMP_OBJREF 3 /* for dataset, group, datatype */
/* 2. region references in compound attr */
#define RANK_COMP_REGREF 1
#define DIM_COMP_REGREF 1 /* for element region */
/* 3. obj references in vlen attr */
#define RANK_VLEN_OBJREF 1
#define DIM_VLEN_OBJREF 3 /* for dataset, group, datatype */
#define LEN0_VLEN_OBJREF 1 /* dataset */
#define LEN1_VLEN_OBJREF 1 /* group */
#define LEN2_VLEN_OBJREF 1 /* datatype */
/* 4. region references in vlen attr */
#define RANK_VLEN_REGREF 1
#define DIM_VLEN_REGREF 1 /* for element region */
#define LEN0_VLEN_REGREF 1 /* element region */
static herr_t make_complex_attr_references(hid_t loc_id)
{
herr_t ret = SUCCEED;
herr_t status;
/*
* for objects
*/
hid_t objgid=0, objdid=0, objtid=0, objsid=0;
hsize_t obj_dims[RANK_OBJ] = {DIM0_OBJ, DIM1_OBJ};
int obj_data[DIM0_OBJ][DIM1_OBJ]=
{{ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9},
{10,11,12,13,14,15,16,17,18,19},
{20,21,22,23,24,25,26,27,28,29},
{30,31,32,33,34,35,36,37,38,39},
{40,41,42,43,44,45,46,47,48,49},
{50,51,52,53,54,55,56,57,58,59}};
/*
* group main
*/
hid_t main_gid=0;
/*
* dataset which the attribute will be attached to
*/
hsize_t main_dset_dims[RANK_DSET] = {DIM_DSET};
hid_t main_sid=0, main_did=0;
/*
* 1. obj references in compound attr
*/
hid_t comp_objref_tid=0, comp_objref_aid=0;
typedef struct comp_objref_t {
hobj_ref_t val_objref;
int val_int;
} comp_objref_t;
comp_objref_t comp_objref_data[DIM_COMP_OBJREF];
hid_t comp_objref_attr_sid=0;
hsize_t comp_objref_dim[RANK_COMP_OBJREF] = {DIM_COMP_OBJREF};
/*
* 2. region references in compound attr
*/
hid_t comp_regref_tid=0, comp_regref_aid=0;
typedef struct comp_regref_t {
hdset_reg_ref_t val_regref;
int val_int;
} comp_regref_t;
comp_regref_t comp_regref_data[DIM_COMP_REGREF];
hid_t comp_regref_attr_sid=0;
hsize_t comp_regref_dim[RANK_COMP_REGREF] = {DIM_COMP_REGREF};
hsize_t coords[4][2] = { {0,1}, {2,3}, {3,4}, {4,5} };
/*
* 3. obj references in vlen attr
*/
hid_t vlen_objref_attr_tid=0, vlen_objref_attr_sid=0;
hid_t vlen_objref_attr_id=0;
hvl_t vlen_objref_data[DIM_VLEN_OBJREF];
hsize_t vlen_objref_dims[RANK_VLEN_OBJREF] = {DIM_VLEN_OBJREF};
/*
* 4. region references in vlen attr
*/
hid_t vlen_regref_attr_tid=0, vlen_regref_attr_sid=0;
hid_t vlen_regref_attr_id=0;
hvl_t vlen_regref_data[DIM_VLEN_REGREF];
hsize_t vlen_regref_dim[RANK_VLEN_REGREF] = {DIM_VLEN_REGREF};
/* ---------------------------------------
* create objects which to be referenced
*/
/* object1 group */
objgid = H5Gcreate2(loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/* object2 dataset */
objsid = H5Screate_simple(RANK_OBJ, obj_dims, NULL);
objdid = H5Dcreate2(loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, objsid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(objdid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* object3 named datatype */
objtid = H5Tcopy(H5T_NATIVE_INT);
status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, objtid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* ---------------------------------------------
* Put testing objs in this group
* create group contain dataset with attribute and the attribute has
* compound type which contain obj and region reference */
main_gid = H5Gcreate2(loc_id, "group_main", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (main_gid < 0)
{
fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*----------------------------------------------------------
* create dataset which the attribute will be attached to
*/
main_sid = H5Screate_simple(RANK_DSET, main_dset_dims, NULL);
main_did = H5Dcreate2(main_gid, "dset_main", H5T_NATIVE_INT, main_sid, H5P_DEFAULT,H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite(main_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 1. create obj references in a attribute of compound type
*/
/*
* create compound type for attribute
*/
comp_objref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_objref_t));
H5Tinsert(comp_objref_tid, "value_objref", HOFFSET(comp_objref_t, val_objref), H5T_STD_REF_OBJ);
H5Tinsert(comp_objref_tid, "value_int", HOFFSET(comp_objref_t, val_int), H5T_NATIVE_INT);
/*
* Create the object references into compound type
*/
/* references to dataset */
status = H5Rcreate (&(comp_objref_data[0].val_objref), loc_id, NAME_OBJ_DS1, H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_objref_data[0].val_int = 0;
/* references to group */
status = H5Rcreate (&(comp_objref_data[1].val_objref), loc_id, NAME_OBJ_GRP, H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_objref_data[1].val_int = 10;
/* references to datatype */
status = H5Rcreate (&(comp_objref_data[2].val_objref), loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT,-1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_objref_data[2].val_int = 20;
/*
* create attribute and write the object ref
*/
comp_objref_attr_sid = H5Screate_simple (RANK_COMP_OBJREF, comp_objref_dim, NULL);
comp_objref_aid = H5Acreate2 (main_did, "Comp_OBJREF", comp_objref_tid, comp_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite (comp_objref_aid, comp_objref_tid, comp_objref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 2. create region references in attribute of compound type
*/
/*
* create compound type for attribute
*/
comp_regref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_regref_t));
H5Tinsert(comp_regref_tid, "value_regref", HOFFSET(comp_regref_t, val_regref), H5T_STD_REF_DSETREG);
H5Tinsert(comp_regref_tid, "value_int", HOFFSET(comp_regref_t, val_int), H5T_NATIVE_INT);
/*
* create the region reference
*/
status = H5Sselect_elements (objsid, H5S_SELECT_SET, 4, coords[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Rcreate (&(comp_regref_data[0].val_regref), loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
comp_regref_data[0].val_int = 10;
/*
* create attribute and write the region ref
*/
comp_regref_attr_sid = H5Screate_simple (RANK_COMP_REGREF, comp_regref_dim, NULL);
comp_regref_aid = H5Acreate2 (main_did, "Comp_REGREF", comp_regref_tid, comp_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite (comp_regref_aid, comp_regref_tid, comp_regref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 3. create obj references in attribute of vlen type
*/
/*
* prepare vlen data
*/
vlen_objref_data[0].len = LEN0_VLEN_OBJREF;
vlen_objref_data[0].p = malloc (vlen_objref_data[0].len * sizeof(hobj_ref_t));
vlen_objref_data[1].len = LEN1_VLEN_OBJREF;
vlen_objref_data[1].p = malloc (vlen_objref_data[1].len * sizeof(hobj_ref_t));
vlen_objref_data[2].len = LEN2_VLEN_OBJREF;
vlen_objref_data[2].p = malloc (vlen_objref_data[2].len * sizeof(hobj_ref_t));
/*
* create obj references
*/
/* reference to dataset */
status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* reference to group */
status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[1].p)[0], loc_id, NAME_OBJ_GRP, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* reference to datatype */
status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[2].p)[0], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, -1);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*
* create vlen type with obj reference
*/
vlen_objref_attr_tid = H5Tvlen_create (H5T_STD_REF_OBJ);
vlen_objref_attr_sid = H5Screate_simple (RANK_VLEN_OBJREF, vlen_objref_dims, NULL);
/*
* create attribute and write the object reference
*/
vlen_objref_attr_id = H5Acreate2(main_did, "Vlen_OBJREF", vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite (vlen_objref_attr_id, vlen_objref_attr_tid, vlen_objref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* close resource for vlen data */
status = H5Dvlen_reclaim (vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, vlen_objref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*-------------------------------------------------------------------
* 4. create region references in a attribute of vlen type
*/
/*
* prepare vlen data
*/
vlen_regref_data[0].len = LEN0_VLEN_REGREF;
vlen_regref_data[0].p = malloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t));
/*
* create region reference
*/
status = H5Sselect_elements(objsid, H5S_SELECT_SET, 4, coords[0]);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
status = H5Rcreate (&((hdset_reg_ref_t*)vlen_regref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/*
* create vlen type with region reference
*/
vlen_regref_attr_tid = H5Tvlen_create(H5T_STD_REF_DSETREG);
vlen_regref_attr_sid = H5Screate_simple(RANK_VLEN_REGREF, vlen_regref_dim, NULL);
/*
* create attribute and write the region reference
*/
vlen_regref_attr_id = H5Acreate2(main_did, "Vlen_REGREF", vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite(vlen_regref_attr_id, vlen_regref_attr_tid, vlen_regref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
/* close resource for vlen data */
status = H5Dvlen_reclaim (vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, vlen_regref_data);
if (status < 0)
{
fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__);
ret = FAIL;
goto out;
}
out:
/* release resources */
if (objgid < 0)
H5Gclose(objgid);
if (objsid < 0)
H5Sclose(objsid);
if (objdid < 0)
H5Dclose(objdid);
if (objtid < 0)
H5Tclose(objtid);
if (main_gid < 0)
H5Gclose(main_gid);
if (main_sid < 0)
H5Sclose(main_sid);
if (main_did < 0)
H5Dclose(main_did);
/* comp obj ref */
if (comp_objref_tid < 0)
H5Tclose(comp_objref_tid);
if (comp_objref_aid < 0)
H5Aclose(comp_objref_aid);
if (comp_objref_attr_sid < 0)
H5Sclose(comp_objref_attr_sid);
/* comp region ref */
if (comp_regref_tid < 0)
H5Tclose(comp_regref_tid);
if (comp_regref_aid < 0)
H5Aclose(comp_regref_aid);
if (comp_regref_attr_sid < 0)
H5Sclose(comp_regref_attr_sid);
/* vlen obj ref */
if (vlen_objref_attr_id < 0);
H5Aclose (vlen_objref_attr_id);
if (vlen_objref_attr_sid < 0);
H5Sclose (vlen_objref_attr_sid);
if (vlen_objref_attr_tid < 0);
H5Tclose (vlen_objref_attr_tid);
/* vlen region ref */
if (vlen_regref_attr_id < 0);
H5Aclose (vlen_regref_attr_id);
if (vlen_regref_attr_sid < 0);
H5Sclose (vlen_regref_attr_sid);
if (vlen_regref_attr_tid < 0);
H5Tclose (vlen_regref_attr_tid);
return ret;
}
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